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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060787 ID=TCONS_00060787|Name=TCONS_00060787|organism=Clytia hemisphaerica|type=transcript|length=3406bpRun BLAST on NCBI transcript from alignment at scaffold_349:427705..475349+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060787 ID=TCONS_00060787|Name=TCONS_00060787|organism=Clytia hemisphaerica|type=transcript|length=47645bp|location=Sequence derived from alignment at scaffold_349:427705..475349+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00060787 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 5.829e-46 Identity = 76/142 (53.52%), Postives = 108/142 (76.06%), Query Frame = 1
Query: 349 FTQEQVESFRQAFSVFDRENQGSITSNDLLIVMRNLGQNPTHAEIKEMIAEIDADGNDNIEFDEFITIMETKLRNTIPDEHVLEAFHVFDRDNNGFISLKELQHVMFCLGEVLPINEVKKIMAEADLDQDGQLNYKEFAAMM 774
T+EQ+ F++AFS+FD++ G+IT+ +L VMR+LGQNPT AE+++MI E+DADGN I+F EF+T+M K+++T +E + EAF VFD+D NG+IS EL+HVM LGE L EV +++ EAD+D DGQ+NY+EF MM
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 146 The following BLAST results are available for this feature:
BLAST of TCONS_00060787 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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