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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060781 ID=TCONS_00060781|Name=TCONS_00060781|organism=Clytia hemisphaerica|type=transcript|length=2545bp
TAACCCAGCTGAAACACAACGTTTTATTCACTGTCTTTGTAACATCCGTA
ACGTCtttataacgttagatgaacgttgaaataactTTATATTTTAGCTC
TTCAACTTTGCATTTCTCTATAAATAAGGTTACAGACAGTTATTAATCCT
GCATTGTCAAGGAAAGTtgtgaaaaaacattttacagTGAGAGTGGTTTT
GTTAGGTAGAATAACAATGTATTTTCGATTAGCAGTTTTAATAACATTAA
TATGTCTGGCTTTTGGAGATGTCATTCAGAAATCAGGTAATTTTTTCCTC
TTTGCTAGTGCTACTTAACAACGGAAAACAGTTTATTACCGTTTTCCTAT
AAAGATTTTGGCTGAATCTCGGAATCCCGAATATTGAAATGAATAATAGC
ACCGCCACACCGGTTTTCAGAAGCtaaaataccggcataatgacaaaaaa
taaggctaaataccgtctgattttaaaatactgttttcccgtcttttttt
tcgtcaaaccccgtaataccgtaccaaaaaagggccaatcccgtcacacc
gtaacagtacaaccccccccccGAATAAGTCCAACACTCTGGATATAGGT
ACAGAAGTAACTTCAACTTGTTAGGCGGTCAATCGCAAGGCCTTTGTGTG
TTGTCTACGCACGTTTACAATATATTTTTGCTGGTATGCCTAAACTCCTA
GATACTATAGTTAAATCTCACTACTTCAAACTCGAACAAGAAGTCTAATT
TCTCTCGAATTACAGAGATTCGAATGAATAAAAGAGTATTACTGCAGTCA
TCACATTTACTGAAGAaaaatgtacacgttttttttataagaacatccaa
taaTTTTGAGGCCTTCGAATGCTCTTatccttttgagttttaagcctaaa
aatgttcttaatatgttcttattttgactagTTTCTGAgcatttttttac
cattttcctaagaaatagggtgttttaaGGTCcgcaaaacctcaaaatat
tcttaacttatttGTTCTTACATTTaagccattgaagccttatgttctta
tatacagtgtctaattcgatcttcaaagggaattagattttcatcgaata
agggagcgtatcgaataccTTATCGACCAAAACTTATAGTCGGCCCTagt
tttagtcacctcgtcaaaatttaatcACTAAGGGCctactaataattaag
accgactaaaaatttgggccatttctaaatttaaaagcagatggaaaata
ggagaaagttaaaatactggaaaataaggaaagcttaattataaactttt
aattaatttaatttaagtcaccaagccaaaatttagtcacttagggtcga
ctaagttttggccgataaggtagtagaagttgaattagagagcgccaact
gtagcttgttcttataaaacattaCAATCGGCGTCGAAATACAGGGTGAT
TCAATAAAAACCGCACCTCTTAACCTTTTGACGTAAAAAAGTTTAGGGGT
GCGGTTTTTTAATCACTCTGTATTTCGACACTTTTgcgtattttaacgtt
tttcggAATTTAATAAAGATCGTGCGAGAATTGTAGTTTCAGTACTttca
ctttgtttcattggatttttcgatttttgaggggttaactggcttctagg
ctatattctcaagccttattggaacatttttgagcttttagatcctgaga
tcctaaggttgTAAGTCTTTTAAGTCTccctcatgttaaaactcaaagtt
aaaactctactttccaatcGTACTTTAAAGGACCTAAGAATGACTAGccg
ttttcaaatttgaggGATTCCCCTTTTGTGCAAAATATTAAGATGAGGAT
TGTAATTCTATGTaatggacttttccagaaaaaaattgaattaggggggg
ggggggggatattaaaattttcagtgatttaccccggAGAAAGTgacttt
tgccccccccccgacaacaggttttaccccccggaaaagcatcagttgac
cccccggaaAACCCAAACTACACCCCCGGACAGATCAAATTTACCctccg
gacaaggcaaattttgttgatttttcgttagcccccggacaatatatcct
ccacccccccctccatgtacgaacattttctggaagagcccaatatgcCA
ATTTTATCCATTTCTAGACGAAGGCGATGTTAATGTTTCTCAATCCGTAT
CCGCACAAGACAAAGAAGGATGTGGATCTCCCACAATGCCTTGCAAAACA
TTACCATACGCTTCACGACAATGTCAAACACAATCTTGTAGTTTTGTTAT
CGATGGTGGGGCAGAGAAAGGGAGTTATGCTTACATCTTAAACGGAAATG
ACTCTTTCAGTGTTGGTAGGTTTCTTAAATTGCTTTGCTGaatatttttc
tataattttatGAAGTacaaccgtacatcctgtgcccaagttcaggagtt
gccataaagctattatggtaataaccgggagggcataTTGCTATACATTG
TTAAAGTATTTTATAAAGTAAGTTTTTCTATAAGGTATATCTCCT Run BLAST on NCBI transcript from alignment at scaffold_349:407557..410101+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060781 ID=TCONS_00060781|Name=TCONS_00060781|organism=Clytia hemisphaerica|type=transcript|length=2545bp|location=Sequence derived from alignment at scaffold_349:407557..410101+ (Clytia hemisphaerica)
TAACCCAGCTGAAACACAACGTTTTATTCACTGTCTTTGTAACATCCGTA
ACGTCtttataacgttagatgaacgttgaaataactTTATATTTTAGCTC
TTCAACTTTGCATTTCTCTATAAATAAGGTTACAGACAGTTATTAATCCT
GCATTGTCAAGGAAAGTtgtgaaaaaacattttacagTGAGAGTGGTTTT
GTTAGGTAGAATAACAATGTATTTTCGATTAGCAGTTTTAATAACATTAA
TATGTCTGGCTTTTGGAGATGTCATTCAGAAATCAGGTAATTTTTTCCTC
TTTGCTAGTGCTACTTAACAACGGAAAACAGTTTATTACCGTTTTCCTAT
AAAGATTTTGGCTGAATCTCGGAATCCCGAATATTGAAATGAATAATAGC
ACCGCCACACCGGTTTTCAGAAGCtaaaataccggcataatgacaaaaaa
taaggctaaataccgtctgattttaaaatactgttttcccgtcttttttt
tcgtcaaaccccgtaataccgtaccaaaaaagggccaatcccgtcacacc
gtaacagtacaaccccccccccGAATAAGTCCAACACTCTGGATATAGGT
ACAGAAGTAACTTCAACTTGTTAGGCGGTCAATCGCAAGGCCTTTGTGTG
TTGTCTACGCACGTTTACAATATATTTTTGCTGGTATGCCTAAACTCCTA
GATACTATAGTTAAATCTCACTACTTCAAACTCGAACAAGAAGTCTAATT
TCTCTCGAATTACAGAGATTCGAATGAATAAAAGAGTATTACTGCAGTCA
TCACATTTACTGAAGAaaaatgtacacgttttttttataagaacatccaa
taaTTTTGAGGCCTTCGAATGCTCTTatccttttgagttttaagcctaaa
aatgttcttaatatgttcttattttgactagTTTCTGAgcatttttttac
cattttcctaagaaatagggtgttttaaGGTCcgcaaaacctcaaaatat
tcttaacttatttGTTCTTACATTTaagccattgaagccttatgttctta
tatacagtgtctaattcgatcttcaaagggaattagattttcatcgaata
agggagcgtatcgaataccTTATCGACCAAAACTTATAGTCGGCCCTagt
tttagtcacctcgtcaaaatttaatcACTAAGGGCctactaataattaag
accgactaaaaatttgggccatttctaaatttaaaagcagatggaaaata
ggagaaagttaaaatactggaaaataaggaaagcttaattataaactttt
aattaatttaatttaagtcaccaagccaaaatttagtcacttagggtcga
ctaagttttggccgataaggtagtagaagttgaattagagagcgccaact
gtagcttgttcttataaaacattaCAATCGGCGTCGAAATACAGGGTGAT
TCAATAAAAACCGCACCTCTTAACCTTTTGACGTAAAAAAGTTTAGGGGT
GCGGTTTTTTAATCACTCTGTATTTCGACACTTTTgcgtattttaacgtt
tttcggAATTTAATAAAGATCGTGCGAGAATTGTAGTTTCAGTACTttca
ctttgtttcattggatttttcgatttttgaggggttaactggcttctagg
ctatattctcaagccttattggaacatttttgagcttttagatcctgaga
tcctaaggttgTAAGTCTTTTAAGTCTccctcatgttaaaactcaaagtt
aaaactctactttccaatcGTACTTTAAAGGACCTAAGAATGACTAGccg
ttttcaaatttgaggGATTCCCCTTTTGTGCAAAATATTAAGATGAGGAT
TGTAATTCTATGTaatggacttttccagaaaaaaattgaattaggggggg
ggggggggatattaaaattttcagtgatttaccccggAGAAAGTgacttt
tgccccccccccgacaacaggttttaccccccggaaaagcatcagttgac
cccccggaaAACCCAAACTACACCCCCGGACAGATCAAATTTACCctccg
gacaaggcaaattttgttgatttttcgttagcccccggacaatatatcct
ccacccccccctccatgtacgaacattttctggaagagcccaatatgcCA
ATTTTATCCATTTCTAGACGAAGGCGATGTTAATGTTTCTCAATCCGTAT
CCGCACAAGACAAAGAAGGATGTGGATCTCCCACAATGCCTTGCAAAACA
TTACCATACGCTTCACGACAATGTCAAACACAATCTTGTAGTTTTGTTAT
CGATGGTGGGGCAGAGAAAGGGAGTTATGCTTACATCTTAAACGGAAATG
ACTCTTTCAGTGTTGGTAGGTTTCTTAAATTGCTTTGCTGaatatttttc
tataattttatGAAGTacaaccgtacatcctgtgcccaagttcaggagtt
gccataaagctattatggtaataaccgggagggcataTTGCTATACATTG
TTAAAGTATTTTATAAAGTAAGTTTTTCTATAAGGTATATCTCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060781-exon-scaffold_349-1491911889:407557..410101 | TCONS_00060781-exon-scaffold_349-1491911889:407557..410101 | Clytia hemisphaerica | exon |
| TCONS_00060781-exon-scaffold_349-1510915933:407557..410101 | TCONS_00060781-exon-scaffold_349-1510915933:407557..410101 | Clytia hemisphaerica | exon |
| TCONS_00060781-exon-scaffold_349-1575043694:407557..410101 | TCONS_00060781-exon-scaffold_349-1575043694:407557..410101 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_349 | supercontig | scaffold_349:407557..410101 + |
Blast
The following BLAST results are available for this feature:
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