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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060778 ID=TCONS_00060778|Name=TCONS_00060778|organism=Clytia hemisphaerica|type=transcript|length=2376bp
TACTTTCTCAATGGTCTCTTTTCAtaggacacccctgtctcagtgctccg
gtggaaccttttccctcagtgggtatgaaaatttctatcgaaatcccaat
gggggtagaaaatctattgtttccagctcaaaaattccagtggggatggt
tttgaagtccAATTTTTtcgattcaattttcaatggggatacgatcatag
ggcaatttcccagtggggttgaaaatgtagggtattttttccaccggata
cgattttttagcctatttttccaccggggcggGGGGTCCattgggtctgt
gacacaggggtgtcataGGTTTTGGTGTAAAAATCAGTGAGAGACACGTC
GCAACCAACCCAGTTGGCataaaacgttgtttcaacgttcatataacgtt
atatggacgttgtgaacattagataaacgttgaaataacgttttgtgcca
gctaGGAAAACAAGATAAGCTCATTCACATTTAGACATTCACaggctggt
cagaagacaacatgagagcgactgtattcacttcattgttaTTCAcattt
gttttctttatttaattCCAATATAATATGAAAGAAGAATGGGCAATATT
CCAGTTATTCACGAGTTTGTTACTTGTGTTCAATCACTTGGTGACGCTAT
AGCGGGCGACACGAAATCCGCACGCAAACGGTGGGATACGTACGCCAAAG
AGAGCGTCATCGGATCTACCGTGGCAGGAATCTACTATAGTGCACGGAAT
GAAAAAAGTAGAgcaaaagagtatttcaaaggAACTGGGAGGGCATTTGG
GAAAGCCATCCTTGGTGGTGGCATTTTAAAGAGTGTTCCATTGTTTCATG
AGCTTGCGACAGCTGGAGAATCACTCGGTGACGTCATCGGAGGTGGTGAT
ACAAAGTCAGCACGTCAGAGATGGAAAAATTATGCAGAGAACAGCGTCAT
TGGTTCATTTTGTTATGCTATACACGAGTCAAGAAAAGGTCGAGAAGAAC
ACGCtcgaaaattgatgaaaaatagtGGAAAGGCTTTAATCAACGCAGGG
GCAACAGTGGCAGCTATTGCACTCACATCAACTACAGCTGGTCTGGCGGC
ACCATTAGGAATGGGTGCTGCTGCACTGGCTGCTGGATCAGTGGGTGCCA
CAACTTCAGTAGCATCAACCTACCTTGGTGGAAAATTAAGTGGTGAAAAG
ATATCAACGGGTGATTATTTTGGTGCAGCTCTCATGGGTGGTATTGGTGG
TGCTTTACAAGGAGCCATGGAAGCAAGAACCTACAATAGAACAATGCAAG
CTTTAGAACAAGGAGAACGAATGATCGGAGCAGGAGAAGACGCTGTTGAG
ATGTCAAAAGCAAGAAATGATGGCGCAGAAGGAACAGTCAGCTCTAAGAT
GTACTCAAAAGAAGGAGATACAGGTTCTGTTGGCTACAACACAAAGACAA
GAGGTAAAATGATAAAAGAGTCGGGAACAATACCGAAAAAATTACGAAAT
ACCACAAACATGACACCTGATGAGATAGcacattatcaaaaattatccaa
aatgaAGGACGGACCTCTTGGAAATGCAACAGGAGATGGAACTTGGTTTC
CAAAAGGAACACCGAATGTAGATGCTGCAAAGGCTAACCCTAATGTGCAA
TCAGCACTTGGTGATAATGTCAGTCGCCCAATCCACAATTGTGCGGAACC
TCACGCACTTGAAATTGCTAAAAATGCAAACCCTAGCTTTGTACCAGGTG
AAAATTATACGTTAGAGATTAAAAATGCTGTCCCTGTGGTAAAGCCACCA
TGTAACAACTGTGCTGCCATGGGTAATGTGAGCGCTTATGGTCAAGTTCC
GTTTGCAGATTATGGAGGTATGTCTTATGCTGATGCTGCCTTGGCCAAAC
TTAACTCTACTGTGAAAACTGGTGGTTTAGAACAAGTAGCCGGCCATATT
GTTCAAGCTGGATCCGTAGATGCCCCAAATCCAACTCCATTAGAAGAAGA
ATCAGAAAAAGAGCAAACGAAAAACAGTAATACACTATCTACAAACACGA
ACGAGATCACTCCACTTCTTTCTTCTGCTCAAACTCCATATGTGGGTGCT
TCTGCTAAAGCAGCTCCAATTGGCTTATCACCAATTTCGTCATTAGCATC
AGCTATTACCTGTAATGATGATGCTGCTAAGATGGTTGTTGACGCTGTCG
AGGTTGCCGCTCTTGATGTTGGCGCAGCGGTTGTTGACACAATTGGTTAT
GTAACTCTTGGACCTGTTTATGGATTGATTAAACTTTTTAAGTGATCAAC
TAGAACCATTTTATTCTTTGTTCGATACCGTACATTTAATTTGGTCAGTC
GGGTaacgacaaacaaacatttcttt Run BLAST on NCBI transcript from alignment at scaffold_349:395474..398599+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060778 ID=TCONS_00060778|Name=TCONS_00060778|organism=Clytia hemisphaerica|type=transcript|length=3126bp|location=Sequence derived from alignment at scaffold_349:395474..398599+ (Clytia hemisphaerica)
TACTTTCTCAATGGTCTCTTTTCAtaggacacccctgtctcagtgctccg
gtggaaccttttccctcagtgggtatgaaaatttctatcgaaatcccaat
gggggtagaaaatctattgtttccagctcaaaaattccagtggggatggt
tttgaagtccAATTTTTtcgattcaattttcaatggggatacgatcatag
ggcaatttcccagtggggttgaaaatgtagggtattttttccaccggata
cgattttttagcctatttttccaccggggcggGGGGTCCattgggtctgt
gacacaggggtgtcataGGTTTTGGTGTAAAAATCAGTGAGAGACACGTC
GCAACCAACCCAGTTGGCataaaacgttgtttcaacgttcatataacgtt
atatggacgttgtgaacattagataaacgttgaaataacgttttgtgcca
gctaGGAAAACAAGATAAGCTCATTCACATTTAGACATTCACaggctggt
cagaagacaacatgagagcgactgtattcacttcattgttaTTCAcattt
gttttctttatttaattCCAATATAATATGAAAGAAGAATGGGCAATATT
CCAGTTATTCACGAGTTTGTTACTTGTGTTCAATCACTTGGTGACGCTAT
AGCGGGCGACACGAAATCCGCACGCAAACGGTGGGATACGTACGCCAAAG
AGAGCGTCATCGGATCTACCGTGGCAGGAATCTACTATAGTGCACGGAAT
GAAAAAAGTAGAgcaaaagagtatttcaaaggAACTGGGAGGGCATTTGG
GAAAGCCATCCTTGGTGGTGGCATTTTAAAGAGTGTTCCATTGTTTCATG
AGCTTGCGACAGCTGGAGAATCACTCGGTGACGTCATCGGAGGTGGTGAT
ACAAAGTCAGCACGTCAGAGATGGAAAAATTATGCAGAGAACAGCGTCAT
TGGTTCATTTTGTTATGCTATACACGAGTCAAGAAAAGGTCGAGAAGAAC
ACGCtcgaaaattgatgaaaaatagtGGAAAGGCTTTAATCAACGCAGGG
GCAACAGTGGCAGCTATTGCACTCACATCAACTACAGCTGGTCTGGCGGC
ACCATTAGGAATGGGTGCTGCTGCACTGGCTGCTGGATCAGTGGGTGCCA
CAACTTCAGTAGCATCAACCTACCTTGGTGGAAAATTAAGTGGTGAAAAG
ATATCAACGGGTGATTATTTTGGTGCAGCTCTCATGGGTGGTATTGGTGG
TGCTTTACAAGGAGCCATGGAAGCAAGAACCTACAATAGAACAATGCAAG
CTTTAGAACAAGGAGAACGAATGATCGGAGCAGGAGAAGACGCTGTTGAG
ATGTCAAAAGCAAGAAATGATGGCGCAGAAGGAACAGTCAGCTCTAAGAT
GTACTCAAAAGAAGGAGATACAGGTTAAATAAGATTTCATTTGCACGTTC
acgtttctttttataagaacatccaaaatctttaaagccatctgattttc
ttaactttttaagttttaagcctgaaaatattcttaacatgttcttaatt
tcacctattttggtctattttcctaagaaaatgggtgtttcagagtccgc
aaagccttgtgttcttatatagtttgttttttgaagtgctCAAGTGCTGG
GTTAAGCTTGGCTATCCCCTAAGGAAATTTTATACTTCAGTTTTTACTAA
ACATATATGGTTTTCTGTATAGTACAAAATTGACTAAGTAGATCGTAATT
GTCGAtagtaaaaaattttaaaactattACATTTCTATTTAAGCAACCTC
CTTTTTGGCTCATGGAAGCTAGAATTGCTAAAGATTTTCATTGTGATTAT
TTTCGTTCAACCTATTTCTCGTTtttaccactgacctttatatatccctg
gaccaagtttctaaatcccggccaagcaaaatctttgatcggagtttttt
gaaaagtggtaacCTAATGGCGGCACAACTCAATAGCGGtataaatgcat
cgagagcgctagatctactttccctcgtaaacttttgatgatttagcgcc
gttagacgttaatttttaacactgcaatggcttctttacgggtaccaatt
caaaaataacttcgatcaaagatggtggatatagcttggtccaggaatat
ataaaggtcagtgttttTTGCAGGTTCTGTTGGCTACAACACAAAGACAA
GAGGTAAAATGATAAAAGAGTCGGGAACAATACCGAAAAAATTACGAAAT
ACCACAAACATGACACCTGATGAGATAGcacattatcaaaaattatccaa
aatgaAGGACGGACCTCTTGGAAATGCAACAGGAGATGGAACTTGGTTTC
CAAAAGGAACACCGAATGTAGATGCTGCAAAGGCTAACCCTAATGTGCAA
TCAGCACTTGGTGATAATGTCAGTCGCCCAATCCACAATTGTGCGGAACC
TCACGCACTTGAAATTGCTAAAAATGCAAACCCTAGCTTTGTACCAGGTG
AAAATTATACGTTAGAGATTAAAAATGCTGTCCCTGTGGTAAAGCCACCA
TGTAACAACTGTGCTGCCATGGGTAATGTGAGCGCTTATGGTCAAGTTCC
GTTTGCAGATTATGGAGGTATGTCTTATGCTGATGCTGCCTTGGCCAAAC
TTAACTCTACTGTGAAAACTGGTGGTTTAGAACAAGTAGCCGGCCATATT
GTTCAAGCTGGATCCGTAGATGCCCCAAATCCAACTCCATTAGAAGAAGA
ATCAGAAAAAGAGCAAACGAAAAACAGTAATACACTATCTACAAACACGA
ACGAGATCACTCCACTTCTTTCTTCTGCTCAAACTCCATATGTGGGTGCT
TCTGCTAAAGCAGCTCCAATTGGCTTATCACCAATTTCGTCATTAGCATC
AGCTATTACCTGTAATGATGATGCTGCTAAGATGGTTGTTGACGCTGTCG
AGGTTGCCGCTCTTGATGTTGGCGCAGCGGTTGTTGACACAATTGGTTAT
GTAACTCTTGGACCTGTTTATGGATTGATTAAACTTTTTAAGTGATCAAC
TAGAACCATTTTATTCTTTGTTCGATACCGTACATTTAATTTGGTCAGTC
GGGTaacgacaaacaaacatttcttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060778-exon-scaffold_349-1491911889:395474..396896 | TCONS_00060778-exon-scaffold_349-1491911889:395474..396896 | Clytia hemisphaerica | exon |
| TCONS_00060778-exon-scaffold_349-1510915933:395474..396896 | TCONS_00060778-exon-scaffold_349-1510915933:395474..396896 | Clytia hemisphaerica | exon |
| TCONS_00060778-exon-scaffold_349-1575043694:395474..396896 | TCONS_00060778-exon-scaffold_349-1575043694:395474..396896 | Clytia hemisphaerica | exon |
| TCONS_00060778-exon-scaffold_349-1491911889:397647..398599 | TCONS_00060778-exon-scaffold_349-1491911889:397647..398599 | Clytia hemisphaerica | exon |
| TCONS_00060778-exon-scaffold_349-1510915933:397647..398599 | TCONS_00060778-exon-scaffold_349-1510915933:397647..398599 | Clytia hemisphaerica | exon |
| TCONS_00060778-exon-scaffold_349-1575043694:397647..398599 | TCONS_00060778-exon-scaffold_349-1575043694:397647..398599 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_349 | supercontig | scaffold_349:395474..398599 + |
Blast
The following BLAST results are available for this feature:
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