TCONS_00060774 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060774
Unique NameTCONS_00060774
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1873

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060774 ID=TCONS_00060774|Name=TCONS_00060774|organism=Clytia hemisphaerica|type=transcript|length=1873bp
TCTAGAAAGAGCAAGACAAGTCACAGAAAACTGAAACAAATTAGAACTTT
CACCACTCAAATATAACTGTAAAGaTGAGCGAAGTACCAGAACAACAAAC
CAACATCAACGAATTCTGGGATTGTATATCTGAAATAGTCCAAGGCGGTA
ACGATTTCATGACACCAAGTCCATTGGATAACGATTATTCTGAAAACGGT
GAAGAGGAAGAAAACAAATTTACGTTCATGTATCAAGAACAGCCTTACCC
ATCACCCGAGTATTACAATCAATACACCAACTTAGACAATACCAAAATTC
AAAGTCAACAATTTATTGATTCCGTTCTTCAAGGACAACAACTTGCACAA
GCTAAGATTGAAAGCCAACAATTTATGGATGATGTtttaaaaggtgaaaa
taatggAGCTTACACCACAAACAACAATTATATGGCATCTCCAACACTCT
CACAATCTTCAAatagcaaaattcaagatgtttCTTATTTGAAAGCAATT
TTACAGAACACTGCAATGACAGTTCAGGCACCACATTCACAACAACCTGA
ATTATTTGTCACACAAGCTTCACCACTATCAGTTCAACAcgatgatgatg
acgatgatgacgAGATTGACATTGACAGTGTCGTTTTGTTCAATGATGAT
ATCCCACCTAAAGAAGATGATACTGCTCTTGTCAGCGATGAAGAACTTGT
TACTCTCTCTGTTCGCGACTTGAACAAGAGATTAAGGAATCTTACCAAAG
ATGAGAAAATCAAATACAAGCAACGAAGACGTCTTTTGAAAAATCGTGGA
TATGCTCAAACTTGTCGCACTCGCCGCATTCATAACCAACATgctaaaat
aattgaaaatgaaaaactcaaAGAAGTATTACAACAAATTACCTTGGAGA
GAAATCTCTACAAAACAAAGTATGAAAACTTGAAAGCTGTCATCAAGAAA
GCCAAGATTGAGCGTGAAAAGCGAAAGGATTCCGTTCAAGCTTAGTAAAA
CACAAAACACTTCATAgaatattaaaattttatttagccttttattttga
gatttattagaacatctttccttttaatttttataaaacgggacataaag
aaaatatatttataaCACTGTAAATATGTACATAGTTTTTCGTAATGACT
TAAACAAGATACTAAGATATTCCATTTGAATTGAAATGATTTAAAACATC
CTTCTCACCCCTTTCTTTGGTCCCatagaaagtccttcttaaatTTCTAC
CCAAGATGATATTGCTTNGAAAACTTGAAAGCTGTCATCAAGAAAGCCAA
GATTGAGCGTGAAAAGCGAAAGGATTCCGTTCAAGCTTAGTAAAAAACAA
AGCACACAACACTTCATAggatattaaattttatttagccttttattttg
agatttattagaacatctttccttttaatttttataaaacgggacataaa
gaaaatatatttataaCACTGTAAATATGTACATAGTTTTTCGTAATGAC
TTAAACAAGATACTAAGATATTCCATTTGAATTGAAATGATTTAAAACAT
CCTTCTCACCCCTTTCTTTGGTCCCatagaaagtccttcttaaatTTCTA
CCCAAGATGATATTGCTTGAAAGCTAACAAATACCGTAGATCTCGTTTGT
AATTAAGTCTGAAAAGTAAATTACTAAAATGTTTGACTGTTGTATATAGG
ATAGATtactatgaaaaaaaaattgaaaatatttttcaaaaaaacaataa
aatttttaaaattaataatcCTAGAAAAATTGTAGAATTGAATTAGTTGt
gattttaagaaagaaatgtaTATAAAACTAAACGTTGAGTGTATGATTTT
TTGAGGAAACATTACATCATACT
Run BLAST on NCBI

protein sequence of TCONS_00060774-protein

>TCONS_00060774-protein ID=TCONS_00060774-protein|Name=TCONS_00060774-protein|organism=Clytia hemisphaerica|type=polypeptide|length=306bp
MSEVPEQQTNINEFWDCISEIVQGGNDFMTPSPLDNDYSENGEEEENKFT
FMYQEQPYPSPEYYNQYTNLDNTKIQSQQFIDSVLQGQQLAQAKIESQQF
MDDVLKGENNGAYTTNNNYMASPTLSQSSNSKIQDVSYLKAILQNTAMTV
QAPHSQQPELFVTQASPLSVQHDDDDDDDEIDIDSVVLFNDDIPPKEDDT
ALVSDEELVTLSVRDLNKRLRNLTKDEKIKYKQRRRLLKNRGYAQTCRTR
RIHNQHAKIIENEKLKEVLQQITLERNLYKTKYENLKAVIKKAKIEREKR
KDSVQA
Run BLAST on NCBI

transcript from alignment at scaffold_349:167294..169369+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060774 ID=TCONS_00060774|Name=TCONS_00060774|organism=Clytia hemisphaerica|type=transcript|length=2076bp|location=Sequence derived from alignment at scaffold_349:167294..169369+ (Clytia hemisphaerica)
TCTAGAAAGAGCAAGACAAGTCACAGAAAACTGAAACAAATTAGAACTTT
CACCACTCAAATATAACTGTAAAGGTAAGCAGAAATTCTAANGTTAAATA
AATTTAGAACTTTCACCACTCAAAAATATCTGTAAAGGTAAgcagaaatt
caaatttcatggTATTTACACAAATAAGCAAAAATCTAGACCAGATTGAA
TTTAACGTTTAATTTAAATAAAGATGTTTTGATTTGTAAGCATGGTTAAt
aacaatttatttttttaatttttacagaTGAGCGAAGTACCAGAACAACA
AACCAACATCAACGAATTCTGGGATTGTATATCTGAAATAGTCCAAGGCG
GTAACGATTTCATGACACCAAGTCCATTGGATAACGATTATTCTGAAAAC
GGTGAAGAGGAAGAAAACAAATTTACGTTCATGTATCAAGAACAGCCTTA
CCCATCACCCGAGTATTACAATCAATACACCAACTTAGACAATACCAAAA
TTCAAAGTCAACAATTTATTGATTCCGTTCTTCAAGGACAACAACTTGCA
CAAGCTAAGATTGAAAGCCAACAATTTATGGATGATGTtttaaaaggtga
aaataatggAGCTTACACCACAAACAACAATTATATGGCATCTCCAACAC
TCTCACAATCTTCAAatagcaaaattcaagatgtttCTTATTTGAAAGCA
ATTTTACAGAACACTGCAATGACAGTTCAGGCACCACATTCACAACAACC
TGAATTATTTGTCACACAAGCTTCACCACTATCAGTTCAACAcgatgatg
atgacgatgatgacgAGATTGACATTGACAGTGTCGTTTTGTTCAATGAT
GATATCCCACCTAAAGAAGATGATACTGCTCTTGTCAGCGATGAAGAACT
TGTTACTCTCTCTGTTCGCGACTTGAACAAGAGATTAAGGAATCTTACCA
AAGATGAGAAAATCAAATACAAGCAACGAAGACGTCTTTTGAAAAATCGT
GGATATGCTCAAACTTGTCGCACTCGCCGCATTCATAACCAACATgctaa
aataattgaaaatgaaaaactcaaAGAAGTATTACAACAAATTACCTTGG
AGAGAAATCTCTACAAAACAAAGTATGAAAACTTGAAAGCTGTCATCAAG
AAAGCCAAGATTGAGCGTGAAAAGCGAAAGGATTCCGTTCAAGCTTAGTA
AAACACAAAACACTTCATAgaatattaaaattttatttagccttttattt
tgagatttattagaacatctttccttttaatttttataaaacgggacata
aagaaaatatatttataaCACTGTAAATATGTACATAGTTTTTCGTAATG
ACTTAAACAAGATACTAAGATATTCCATTTGAATTGAAATGATTTAAAAC
ATCCTTCTCACCCCTTTCTTTGGTCCCatagaaagtccttcttaaatTTC
TACCCAAGATGATATTGCTTNGAAAACTTGAAAGCTGTCATCAAGAAAGC
CAAGATTGAGCGTGAAAAGCGAAAGGATTCCGTTCAAGCTTAGTAAAAAA
CAAAGCACACAACACTTCATAggatattaaattttatttagccttttatt
ttgagatttattagaacatctttccttttaatttttataaaacgggacat
aaagaaaatatatttataaCACTGTAAATATGTACATAGTTTTTCGTAAT
GACTTAAACAAGATACTAAGATATTCCATTTGAATTGAAATGATTTAAAA
CATCCTTCTCACCCCTTTCTTTGGTCCCatagaaagtccttcttaaatTT
CTACCCAAGATGATATTGCTTGAAAGCTAACAAATACCGTAGATCTCGTT
TGTAATTAAGTCTGAAAAGTAAATTACTAAAATGTTTGACTGTTGTATAT
AGGATAGATtactatgaaaaaaaaattgaaaatatttttcaaaaaaacaa
taaaatttttaaaattaataatcCTAGAAAAATTGTAGAATTGAATTAGT
TGtgattttaagaaagaaatgtaTATAAAACTAAACGTTGAGTGTATGAT
TTTTTGAGGAAACATTACATCATACT

Coding sequence (CDS) from alignment at scaffold_349:167294..169369+

>TCONS_00060774 ID=TCONS_00060774|Name=TCONS_00060774|organism=Clytia hemisphaerica|type=CDS|length=921bp|location=Sequence derived from alignment at scaffold_349:167294..169369+ (Clytia hemisphaerica)
aTGAGCGAAGTACCAGAACAACAAACCAACATCAACGAATTCTGGGATTG
TATATCTGAAATAGTCCAAGGCGGTAACGATTTCATGACACCAAGTCCAT
TGGATAACGATTATTCTGAAAACGGTGAAGAGGAAGAAAACAAATTTACG
TTCATGTATCAAGAACAGCCTTACCCATCACCCGAGTATTACAATCAATA
CACCAACTTAGACAATACCAAAATTCAAAGTCAACAATTTATTGATTCCG
TTCTTCAAGGACAACAACTTGCACAAGCTAAGATTGAAAGCCAACAATTT
ATGGATGATGTtttaaaaggtgaaaataatggAGCTTACACCACAAACAA
CAATTATATGGCATCTCCAACACTCTCACAATCTTCAAatagcaaaattc
aagatgtttCTTATTTGAAAGCAATTTTACAGAACACTGCAATGACAGTT
CAGGCACCACATTCACAACAACCTGAATTATTTGTCACACAAGCTTCACC
ACTATCAGTTCAACAcgatgatgatgacgatgatgacgAGATTGACATTG
ACAGTGTCGTTTTGTTCAATGATGATATCCCACCTAAAGAAGATGATACT
GCTCTTGTCAGCGATGAAGAACTTGTTACTCTCTCTGTTCGCGACTTGAA
CAAGAGATTAAGGAATCTTACCAAAGATGAGAAAATCAAATACAAGCAAC
GAAGACGTCTTTTGAAAAATCGTGGATATGCTCAAACTTGTCGCACTCGC
CGCATTCATAACCAACATgctaaaataattgaaaatgaaaaactcaaAGA
AGTATTACAACAAATTACCTTGGAGAGAAATCTCTACAAAACAAAGTATG
AAAACTTGAAAGCTGTCATCAAGAAAGCCAAGATTGAGCGTGAAAAGCGA
AAGGATTCCGTTCAAGCTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038186XLOC_038186Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060774-proteinTCONS_00060774-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060774-exon-scaffold_349-1491911889:167294..167367TCONS_00060774-exon-scaffold_349-1491911889:167294..167367Clytia hemisphaericaexon
TCONS_00060774-exon-scaffold_349-1510915933:167294..167367TCONS_00060774-exon-scaffold_349-1510915933:167294..167367Clytia hemisphaericaexon
TCONS_00060774-exon-scaffold_349-1575043694:167294..167367TCONS_00060774-exon-scaffold_349-1575043694:167294..167367Clytia hemisphaericaexon
TCONS_00060774-exon-scaffold_349-1491911889:167571..169369TCONS_00060774-exon-scaffold_349-1491911889:167571..169369Clytia hemisphaericaexon
TCONS_00060774-exon-scaffold_349-1510915933:167571..169369TCONS_00060774-exon-scaffold_349-1510915933:167571..169369Clytia hemisphaericaexon
TCONS_00060774-exon-scaffold_349-1575043694:167571..169369TCONS_00060774-exon-scaffold_349-1575043694:167571..169369Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_349supercontigscaffold_349:167294..169369 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.7391	16.6986	4.79783	2.96372	143.077	133.727	77.6835	98.7299	29.3172	180.038	71.7008	68.2487	82.5112	63.6432	93.9017	123.516	32.2475	44.7773	110.026	92.7117	136.692	151.44	32.885	46.193	41.2555	89.5174	198.083	167.244	157.358	93.81
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004826bZIP_Maf
IPR008917TF_DNA-bd
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
Blast
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BLAST of TCONS_00060774 vs. Swiss-Prot (Human)
Match: MAF (Transcription factor Maf OS=Homo sapiens GN=MAF PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 8.759e-20
Identity = 45/92 (48.91%), Postives = 67/92 (72.83%), Query Frame = 3 
Query:  684 SDEELVTLSVRDLNKRLRNLTKDEKIKYKQRRRLLKNRGYAQTCRTRRIHNQHAKIIENEK---------LKEVLQQITLERNLYKTKYENL 932
            SDE+LVT+SVR+LN++LR ++K+E I+ KQ+RR LKNRGYAQ+CR +R+  +H  ++E+EK         LK+ + ++  ER+ YK KYE L
Sbjct:  262 SDEQLVTMSVRELNRQLRGVSKEEVIRLKQKRRTLKNRGYAQSCRFKRVQQRH--VLESEKNQLLQQVDHLKQEISRLVRERDAYKEKYEKL 351
The following BLAST results are available for this feature:
BLAST of TCONS_00060774 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MAF8.759e-2048.91Transcription factor Maf OS=Homo sapiens GN=MAF PE... [more]
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