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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060771 ID=TCONS_00060771|Name=TCONS_00060771|organism=Clytia hemisphaerica|type=transcript|length=3844bpRun BLAST on NCBI transcript from alignment at scaffold_349:50567..62356+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060771 ID=TCONS_00060771|Name=TCONS_00060771|organism=Clytia hemisphaerica|type=transcript|length=11790bp|location=Sequence derived from alignment at scaffold_349:50567..62356+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00060771 vs. Swiss-Prot (Human)
Match: MYH6 (Myosin-6 OS=Homo sapiens GN=MYH6 PE=1 SV=5) HSP 1 Score: 391.734 bits (1005), Expect = 9.352e-113 Identity = 405/1037 (39.05%), Postives = 662/1037 (63.84%), Query Frame = 2
Query: 5 EEKRKQMENELTDAIASKEKLFADLQAETDRLIATEXXXXXXXXXXXXXEASLNEALEKLESEEHSGEVLESKVAEAESKIDDLNNKADEMQTNIHRLEQEKTSRDKQIDALNEDISKQEEGIAXXXXXXXXXXXXXXXRTEQLQAAEDKCSSLNKAKNKVEGQLKDTEHSXXXXXXXXXXXXXXXXXXXXXXXXTRDQLAETEGNLKEAKDTVVXXXXXXXXXXXXXXGNENQIKQLKKRIAELMAXXXXXXXXXXXXXXXXQKVELARKDLEAQIEEMNEQLESSSGATTAQVEVNKKREAENQRLRKEMDEQXXXXXXXXXXXKQKFNGALAESQDELDGVKKAKAKSDKERAALAAELEDVHGQLETSKKQKQSADKNNRSLEEQLNEVRSKVNDLEGSLADSESRCNKSAADNAALNVQLEEVEHKLGLTTKNLKTMEANFNDAKSNADSESKGKHDNHQKLQNAMGXXXXXXXXXXXXXXXXXXXXNKLSRANADAAQWKNKYDMEGASRVEELEDSKRKLSARVQXXXXXXXXXXXXXXXXXXVKNRMNXXXXXXXXXXXKAQAQASGLEKRQKKFDQQINEWKIKCDEVQADLDQSQRESRGFSTELLKVRTAHEDASEKYDALKKENRALTAELSSITDQLSEGGKSSAEVEKIRRKLGMXXXXXXXXXXXXXXXXXXXXGKFXXXXXXXXXXXXXXDRRASEKDEEMENMRKNHQRQMEALQNTINAEQRAKGDLQKNKKKYDSDVAELEAQLDGALRTNGDYXXXXXXXXXXXXEMQAMIDDESRGRDDMRDSASRSERRANDLAVQLDEARVALEQADRARKLADNEKSEFADRAAELQSMYNNIANAKRKAEGDYHALQXXXXXXXXXAKSGEEKAARAMAEVARLMAELNSAQDAASTADKSRAMLSKQCSDLQSRLEEAEAQGGKGLKNAIRKLESRIMELENDLDTEVRKSSDVIKTARKSEKKVKELQFAVDDEKKSAERAQDTADKLNQKMKKLRMQVEEAEQSASQWQSKYKKAAVDL 3115
E +RK++E ++ + K L +QAE D L E++ Q K +LEA + E E+LE EE L +K + E + +L D+++ + ++E+EK + + ++ L E+++ +E IAKL KEKK L E+ ++ + LQ EDK +SL+K+K K+E Q+ D E SL++EK + +E+ KRK+EG+LK T++ + + E + + ++ + K+E +I + E + QL+K++ E ARIEELE+ELE+ER R KVE R DL ++EE++E+LE + GAT+ Q+E+NKKREAE Q++R++++E +A A+ ++K ++AE +++D +++ K K +KE++ EL+DV +E K K + +K +R+LE+Q NE R K+ + + SL D ++ K +N L QLEE E + T+ + D K + E K K+ LQ+A + + L EQ EEE A+ +LQ LS+AN++ AQW+ KY+ + R EELE++K+KL+ R+Q+ EEA+ A +K SS+EK K+R+ E+EDL++D+E++ A A+ L+K+Q+ FD+ + EWK K +E Q++L+ SQ+E+R STEL K++ A+E++ E + K+EN+ L E+S +T+QL EGGK+ E+EK+R++L +E ELQ ALEEAEA+LE EEGK L+ QL+ Q+K + +R+ +EKDEEME ++NHQR +++LQ +++AE R++ ++ + KKK + D+ E+E QL A R + QK +K LQ+ LK+ Q +DD R DD++++ + ERR N L +L+E R +EQ +R+RKLA+ E E ++R L S ++ N K+K E D LQ E+EE E ++ EEKA +A+ + A + EL QD ++ ++ + + + DLQ RL+EAE KG K ++KLE+R+ ELE +L+ E +++++ +K RKSE+++KEL + +++KK+ R QD DKL K+K + Q EEAE+ A+ SK++K +L
Sbjct: 869 EARRKELEEKMVSLLQEKNDLQLQVQAEQDNLNDAEERCDQLIKNKIQLEAKVKEMNERLEDEEEMNAELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKNLTEEMAGLDEIIAKLTKEKKALQEAHQQALDDLQVEEDKVNSLSKSKVKLEQQVDDLEGSLEQEKKVRMDLERAKRKLEGDLKLTQESIMDLENDKLQLEEKLKKKEFDINQQNSKIEDEQVLALQLQKKLKENQARIEELEEELEAERTARAKVEKLRSDLSRELEEISERLEEAGGATSVQIEMNKKREAEFQKMRRDLEEATLQHEATAAALRKKHADSVAELGEQIDNLQRVKQKLEKEKSEFKLELDDVTSNMEQIIKAKANLEKVSRTLEDQANEYRVKLEEAQRSLNDFTTQRAKLQTENGELARQLEEKEALISQLTRGKLSYTQQMEDLKRQLEEEGKAKNALAHALQSARHDCDLLREQYEEETEAKAELQRVLSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEAVEAVNAKCSSLEKTKHRLQNEIEDLMVDVERSNAAAAALDKKQRNFDKILAEWKQKYEESQSELESSQKEARSLSTELFKLKNAYEESLEHLETFKRENKNLQEEISDLTEQLGEGGKNVHELEKVRKQLEVEKLELQSALEEAEASLEHEEGKILRAQLEFNQIKAEIERKLAEKDEEMEQAKRNHQRVVDSLQTSLDAETRSRNEVLRVKKKMEGDLNEMEIQLSHANRMAAEAQKQVKSLQSLLKDTQIQLDDAVRANDDLKENIAIVERRNNLLQAELEELRAVVEQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKKMESDLTQLQSEVEEAVQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIALKGGKKQLQKLEARVRELEGELEAEQKRNAESVKGMRKSERRIKELTYQTEEDKKNLLRLQDLVDKLQLKVKAYKRQAEEAEEQANTNLSKFRKVQHEL 1905 The following BLAST results are available for this feature:
BLAST of TCONS_00060771 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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