TCONS_00060759 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060759
Unique NameTCONS_00060759
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length315

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060759 ID=TCONS_00060759|Name=TCONS_00060759|organism=Clytia hemisphaerica|type=transcript|length=315bp
CAGCTCTTGAGAGAGATGATTATATGAATGTTCAGAATCTACGAACAATC
ATGTTACAGCGTTGTTGGACTATAGATAACTTGACACCAATCGCTTATCT
AGATGACAACCATGTGCCACCAAACCCACAAAGATATGCTTGGCATCACC
AAGAAAGACGGTGGCACATTTGGGTCACAAATGAGCGACAAAATATCGAG
AACCTCTTCGAGCAAGGATACCGAACACCCGACGCTGTCTTTATTCGTTT
AAACCAACGTTTTGTTATTAACCTAGGATCAATTTGGGACTATGGTGAAA
ATCTACTTGAAGCAG
Run BLAST on NCBI

protein sequence of TCONS_00060759-protein

>TCONS_00060759-protein ID=TCONS_00060759-protein|Name=TCONS_00060759-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
ALERDDYMNVQNLRTIMLQRCWTIDNLTPIAYLDDNHVPPNPQRYAWHHQ
ERRWHIWVTNERQNIENLFEQGYRTPDAVFIRLNQRFVINLGSIWDYGEN
LLEA
Run BLAST on NCBI

transcript from alignment at scaffold_348:526744..527058

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060759 ID=TCONS_00060759|Name=TCONS_00060759|organism=Clytia hemisphaerica|type=transcript|length=315bp|location=Sequence derived from alignment at scaffold_348:526744..527058 (Clytia hemisphaerica)
CTGCTTCAAGTAGATTTTCACCATAGTCCCAAATTGATCCTAGGTTAATA
ACAAAACGTTGGTTTAAACGAATAAAGACAGCGTCGGGTGTTCGGTATCC
TTGCTCGAAGAGGTTCTCGATATTTTGTCGCTCATTTGTGACCCAAATGT
GCCACCGTCTTTCTTGGTGATGCCAAGCATATCTTTGTGGGTTTGGTGGC
ACATGGTTGTCATCTAGATAAGCGATTGGTGTCAAGTTATCTATAGTCCA
ACAACGCTGTAACATGATTGTTCGTAGATTCTGAACATTCATATAATCAT
CTCTCTCAAGAGCTG

Coding sequence (CDS) from alignment at scaffold_348:526744..527058

>TCONS_00060759 ID=TCONS_00060759|Name=TCONS_00060759|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at scaffold_348:526744..527058 (Clytia hemisphaerica)
TGCTTCAAGTAGATTTTCACCATAGTCCCAAATTGATCCTAGGTTAATAA
CAAAACGTTGGTTTAAACGAATAAAGACAGCGTCGGGTGTTCGGTATCCT
TGCTCGAAGAGGTTCTCGATATTTTGTCGCTCATTTGTGACCCAAATGTG
CCACCGTCTTTCTTGGTGATGCCAAGCATATCTTTGTGGGTTTGGTGGCA
CATGGTTGTCATCTAGATAAGCGATTGGTGTCAAGTTATCTATAGTCCAA
CAACGCTGTAACATGATTGTTCGTAGATTCTGAACATTCATATAATCATC
TCTCTCAAGAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038178XLOC_038178Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060759-proteinTCONS_00060759-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060759-exon-scaffold_348-1491911889:526744..527058TCONS_00060759-exon-scaffold_348-1491911889:526744..527058Clytia hemisphaericaexon
TCONS_00060759-exon-scaffold_348-1510915933:526744..527058TCONS_00060759-exon-scaffold_348-1510915933:526744..527058Clytia hemisphaericaexon
TCONS_00060759-exon-scaffold_348-1575043694:526744..527058TCONS_00060759-exon-scaffold_348-1575043694:526744..527058Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_348supercontigscaffold_348:526744..527058 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.430204	0.402752	0	0	0	0.445707	0.222544	0.693342	2.6601	8.97189	2.51196	4.11949	6.047	1.11666	2.58822	3.78733	3.06933	5.92974	4.67044	8.01587	2.29414	2.93804	8.54219	5.29756
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060759 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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