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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060745 ID=TCONS_00060745|Name=TCONS_00060745|organism=Clytia hemisphaerica|type=transcript|length=1674bp
ATAAAGAGCACTTTGCCGGGGCAAAAAAAAATGCGGAGTCAAAGTTAGCT
GAATTGACAGGAGTGTTATTTCTAACAAGATAATtaaattgaacattttt
gtatttcaggtcaaaataagaataagCAACAATGAATAATATTGATATAT
TAAGTGAGGACCTTGCCGTGTCCAAATCATCAtctaaagataaaaatttt
gatgtgaTTGTTGGGCATATTGAAGACATTGTTGTGAGTGAAACTTTTCA
AGAGATGCAATCAAAATTCATGAATAAATATTGTACAGAATTTGAAGATA
GCGAAGAGAACAAATTATCTTATACGCCCATTTTCAATGAATATGTAGAA
ATGTTTGAGAAATTTATCGGTGATGAGCTAACTAAACGACAACCTGGTTT
CCATATGAAAGACTTTATGAAACAACTGtcaaaaagatcaaatgaaATCA
GTGAGGAACTTTTCGAAATGTTATCTTCGTTCActgaatttttagttttt
aaagaGCTGATGGTTGACCATAAAGCTTTCACAGAAGGACGTTGTGTTGA
TTTTTCAATGGATTTAACAATACGCCCTATTAAGAATGTGGATCGTGATG
AAAAGTAATGTTTATGGGAGGTGAACGGATATGTGTTCATTTAGTTGCag
ttttcaaggaaggctttGTTTTATAAGCTGCTCCCTTTTTGGACTTCCCA
TAgaagaatttctcaaaagtcAAATCTACTTTTTacaaagtttgtttaca
aaaggtTTTTTCATAATCATTCACGCATAAGATTGTTAATATATTATAAA
AGAGTTTTTTTCGTTGTATAAACTATTTTTTATCCCAACGAGCAGTTTGC
TACATAGTTGTCGTATAGGTTGGCATTTATTCCAATATTATGCTACATAT
GATTCTTTTACTCTATGGTCTTgacgaaaaattattttttggtaTGTGGT
ACTAAAATTCTATAATTTAATAGTAGTAGGTTTGCCAGCACCATGAAGAG
ATTTTCTACAAATCATTTGAATTACTTTGATGTCTTTTGGTGAGAAGCTG
CAATAAGAccataatttatttttaaattaccATGATTATTTGATTAGTGG
TCTTACTATTTGGTCAGTTCTTGAGGGGCTAAGCACCTACAAAACAGCCT
TGAAAACCTGATTTTTAGCTGTCTTTTGGTGAGAAGCTGCATCAAGACCA
TAATAAAATTTCATATAGAgtttgttttagtttatttaatagtttttatt
ttattttcaaccatTGTACACTAAAGTATATCAAAGTTTTGGTTATAAAT
TTTAAGGCTTAGGGATTGTTTGAAGAGATGATAATTTTTATTCAGCTTTT
GATTACTCTACTAGAAATGAGGTTTTCTAAATAAGACGATAGACTTACTA
ATAAAAAATCTTACTTATTTTGGAGCCGATCCTAATGCCACGGCATTTTT
CACgggtgaaaatttttaaatgataAAATTGAGATGATTTTATCCCTGGA
CTCTGGACAGTACCTTGATAGCCAGGAATActaaaagggataatcagatg
gtttgagatatttagattaCAGAAACCTTCTGCGATCCTTGAGTAAAACC
TCCAAATTATTTGCATAACTTGTTTTTTAttctataagcataacgtttat
aagcatatacatGCTCAGTTTTCG Run BLAST on NCBI protein sequence of TCONS_00060745-protein >TCONS_00060745-protein ID=TCONS_00060745-protein|Name=TCONS_00060745-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
MNNIDILSEDLAVSKSSSKDKNFDVIVGHIEDIVVSETFQEMQSKFMNKY
CTEFEDSEENKLSYTPIFNEYVEMFEKFIGDELTKRQPGFHMKDFMKQLS
KRSNEISEELFEMLSSFTEFLVFKELMVDHKAFTEGRCVDFSMDLTIRPI
KNVDRDEK Run BLAST on NCBI transcript from alignment at scaffold_348:69641..71314 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060745 ID=TCONS_00060745|Name=TCONS_00060745|organism=Clytia hemisphaerica|type=transcript|length=1674bp|location=Sequence derived from alignment at scaffold_348:69641..71314 (Clytia hemisphaerica)
CGAAAACTGAGCatgtatatgcttataaacgttatgcttatagaaTAAAA
AACAAGTTATGCAAATAATTTGGAGGTTTTACTCAAGGATCGCAGAAGGT
TTCTGtaatctaaatatctcaaaccatctgattatcccttttagTATTCC
TGGCTATCAAGGTACTGTCCAGAGTCCAGGGATAAAATCATCTCAATTTt
atcatttaaaaattttcacccGTGAAAAATGCCGTGGCATTAGGATCGGC
TCCAAAATAAGTAAGATTTTTTATTAGTAAGTCTATCGTCTTATTTAGAA
AACCTCATTTCTAGTAGAGTAATCAAAAGCTGAATAAAAATTATCATCTC
TTCAAACAATCCCTAAGCCTTAAAATTTATAACCAAAACTTTGATATACT
TTAGTGTACAatggttgaaaataaaataaaaactattaaataaactaaaa
caaacTCTATATGAAATTTTATTATGGTCTTGATGCAGCTTCTCACCAAA
AGACAGCTAAAAATCAGGTTTTCAAGGCTGTTTTGTAGGTGCTTAGCCCC
TCAAGAACTGACCAAATAGTAAGACCACTAATCAAATAATCATggtaatt
taaaaataaattatggTCTTATTGCAGCTTCTCACCAAAAGACATCAAAG
TAATTCAAATGATTTGTAGAAAATCTCTTCATGGTGCTGGCAAACCTACT
ACTATTAAATTATAGAATTTTAGTACCACAtaccaaaaaataatttttcg
tcAAGACCATAGAGTAAAAGAATCATATGTAGCATAATATTGGAATAAAT
GCCAACCTATACGACAACTATGTAGCAAACTGCTCGTTGGGATAAAAAAT
AGTTTATACAACGAAAAAAACTCTTTTATAATATATTAACAATCTTATGC
GTGAATGATTATGAAAAAaccttttgtaaacaaactttgtAAAAAGTAGA
TTTgacttttgagaaattcttcTATGGGAAGTCCAAAAAGGGAGCAGCTT
ATAAAACaaagccttccttgaaaactGCAACTAAATGAACACATATCCGT
TCACCTCCCATAAACATTACTTTTCATCACGATCCACATTCTTAATAGGG
CGTATTGTTAAATCCATTGAAAAATCAACACAACGTCCTTCTGTGAAAGC
TTTATGGTCAACCATCAGCtctttaaaaactaaaaattcagTGAACGAAG
ATAACATTTCGAAAAGTTCCTCACTGATttcatttgatctttttgaCAGT
TGTTTCATAAAGTCTTTCATATGGAAACCAGGTTGTCGTTTAGTTAGCTC
ATCACCGATAAATTTCTCAAACATTTCTACATATTCATTGAAAATGGGCG
TATAAGATAATTTGTTCTCTTCGCTATCTTCAAATTCTGTACAATATTTA
TTCATGAATTTTGATTGCATCTCTTGAAAAGTTTCACTCACAACAATGTC
TTCAATATGCCCAACAAtcacatcaaaatttttatctttagaTGATGATT
TGGACACGGCAAGGTCCTCACTTAATATATCAATATTATTCATTGTTGct
tattcttattttgacctgaaatacaaaaatgttcaatttaATTATCTTGT
TAGAAATAACACTCCTGTCAATTCAGCTAACTTTGACTCCGCATTTTTTT
TTGCCCCGGCAAAGTGCTCTTTAT Coding sequence (CDS) from alignment at scaffold_348:69641..71314 >TCONS_00060745 ID=TCONS_00060745|Name=TCONS_00060745|organism=Clytia hemisphaerica|type=CDS|length=477bp|location=Sequence derived from alignment at scaffold_348:69641..71314 (Clytia hemisphaerica)
TTACTTTTCATCACGATCCACATTCTTAATAGGGCGTATTGTTAAATCCA
TTGAAAAATCAACACAACGTCCTTCTGTGAAAGCTTTATGGTCAACCATC
AGCtctttaaaaactaaaaattcagTGAACGAAGATAACATTTCGAAAAG
TTCCTCACTGATttcatttgatctttttgaCAGTTGTTTCATAAAGTCTT
TCATATGGAAACCAGGTTGTCGTTTAGTTAGCTCATCACCGATAAATTTC
TCAAACATTTCTACATATTCATTGAAAATGGGCGTATAAGATAATTTGTT
CTCTTCGCTATCTTCAAATTCTGTACAATATTTATTCATGAATTTTGATT
GCATCTCTTGAAAAGTTTCACTCACAACAATGTCTTCAATATGCCCAACA
AtcacatcaaaatttttatctttagaTGATGATTTGGACACGGCAAGGTC
CTCACTTAATATATCAATATTATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060745-exon-scaffold_348-1491911889:69641..71314 | TCONS_00060745-exon-scaffold_348-1491911889:69641..71314 | Clytia hemisphaerica | exon |
| TCONS_00060745-exon-scaffold_348-1510915933:69641..71314 | TCONS_00060745-exon-scaffold_348-1510915933:69641..71314 | Clytia hemisphaerica | exon |
| TCONS_00060745-exon-scaffold_348-1575043694:69641..71314 | TCONS_00060745-exon-scaffold_348-1575043694:69641..71314 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_348 | supercontig | scaffold_348:69641..71314 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR023379 | ARF-like_2-bdp_dom |
Blast
BLAST of TCONS_00060745 vs. Swiss-Prot (Human)
Match: AR2BP (ADP-ribosylation factor-like protein 2-binding protein OS=Homo sapiens GN=ARL2BP PE=1 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 2.249e-36 Identity = 61/131 (46.56%), Postives = 92/131 (70.23%), Query Frame = 3
Query: 189 DKNFDVIVGHIEDIVVSETFQEMQSKFMNKYCTEFEDSEENKLSYTPIFNEYVEMFEKFIGDELTKRQPGFHMKDFMKQLSKRSNEISEELFEMLSSFTEFLVFKELMVDHKAFTEGRCVDFSMDLTIRPI 581
D FD +VG++EDI++ + FQ +Q FM+KY EFED+EENKL YTPIFNEY+ + EK+I ++L +R P F+M F L +E++ ++F+ML +FT+FL FKE+ +D++A EGR +D S L + +
Sbjct: 18 DAEFDAVVGYLEDIIMDDEFQLLQRNFMDKYYLEFEDTEENKLIYTPIFNEYISLVEKYIEEQLLQRIPEFNMAAFTTTLQHHKDEVAGDIFDMLLTFTDFLAFKEMFLDYRAEKEGRGLDLSSGLVVTSL 148
The following BLAST results are available for this feature:
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