TCONS_00060739 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060739
Unique NameTCONS_00060739
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length323

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060739 ID=TCONS_00060739|Name=TCONS_00060739|organism=Clytia hemisphaerica|type=transcript|length=323bp
GGAGATTTTGGTAATGGAGTAGTCAGACGGTAAAAGGAAAtcttctggtc
tgtattttacacGTTGCTGAGATTTTTTACTACTACTCAACCGAGCTGAA
GATTGCCTTCTTGGTTGTTTCAAGTCTGTTGTTGATGTTTTCCAAGTCGA
AAGATTAGACCATGACCTGGCCCGTCTTATATGACGCTTATCCAACGTGG
CATTAGCCTGGAGCTGTGGAATTTCGTCGACATCTGAGCTAGTGACAATG
GACGCTGGTTGACAGAATGTGTTGGCGGATGTGGAATGAAAATATTCTCG
TGTTGTTGATGGCGGTAGTGGTG
Run BLAST on NCBI

transcript from alignment at scaffold_348:482437..489898-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060739 ID=TCONS_00060739|Name=TCONS_00060739|organism=Clytia hemisphaerica|type=transcript|length=7462bp|location=Sequence derived from alignment at scaffold_348:482437..489898- (Clytia hemisphaerica)
GGAGATTTTGGTAATGGAGTAGTCAGACGGTTTGTCATTTTTTTATGATT
TTTGATCAATACTCAAAGCTTATTACATCACTTGTGTTTAAATTATTGAA
ATTTTAGTGAAATCACTATATTCAATCAGGTACTCAATGGGTTTTTGAAA
AACGTTATTTCAATCGGATTAGATTTCGCGAGATCAAATTTTGCAAGCGA
AAAAAATCGCGAAACTTTCTGGATTTAATTTCGCGAGTCAGAGTTTTGAA
TAATTTCGAGTGGATTTAATTTCGCGAATAAGCCTGAACAAACAGCTGAA
AATAGCTATTTTTGCCACAAATGTAGACTTTGGACTGGTTTCTCCGCCGA
AAATGCGATTTTAAAAATTTTGTGGTGAATTTAATTTCGCGGGTCAGGAA
TCTCACACGTTTCGCGGAAATAGCAAAAATTTGCGAAGGTTAATCCGATT
AAAGTAGGTCAAAGAAACCTATATAAATCGTGAGAATCTTAATTTCTATA
AATAAACAATATTAGAGGGTTTTTATCTTCTCCTCGTAGAATGCTCAATA
AGTAAATAGAGCGTTACTATAATAAAGAGTTGACACAATCTCTGTATCAA
ACTCGGAGTTTCATGGTGCTCAGGCACCAATCATCAGTGAAAAGATTGGT
GCCTGAGCACCATGAAACTCTGAGTTTGAAACAGATATTGTGTCAACTCT
TTATTATAAATATTGTTCCTCTTTTTCCCGGTCACATTGTAATCAGCACT
AAAATCTCAGTCATTATATGGAGACAAAATTAATTTTCGCGAAGTCTTAG
CATACCGCTTCCTCAATTTACAGGGATTTTATTTTAAGAACGCATGCACT
AAAATTTTCTAAGTAATTATTAGAGACCGTCCGATTTTAATTTTCTCGGG
ACCGTTTAAAAAATCAAGAATCTCAAAATGAGTTAATATAAATTGGAGAA
AAAAGAAAATTTACTCAACTCCGAGTCCAAGTCCAAAATTATTAATTATT
TGGTTAAAGGTTCTATTTTTAGTGTTCCCGTTCAGGGTTGCCACGCCTCC
TAAAAATCCTAAATTCTCCTAAATTTTGAAAAGTCTCCTAAAATCTCCTT
AGGAAATTGAAATTTTGAATACTTTCTCCTAAAATCTCCTAAAAAATATT
TTACCAAGTTTTCAAAAATTCAATTTACTCTGATTNAAAAGTCTCCTAAA
ATCTCCTTAGGAAATTGAAATTTTGAATACTTTCTCCTAAAATCTCCTAA
AAAATATTTTACCATGTTTTCAAAAATCCAATTTACTCTGATTATCAAAT
TTTCATTGCTAAAAATGATCCTATTCATGGCATACATGATTGTTAACAAA
AGCTTTTTACTATGCTTAAAGGTCTTTAAAAACATTGGAAGTTATGAAAA
TTTTGCAGAATTTTCTCCTCAAAAATCCTAAAATTCTTTTAAAAAGTGTG
AAAATCTCCTCAAAACTCCTAAATTTTCCCCCCGTAATTTTCGGTTTCTC
CTAAAAAAATAGTTGAAAATCACCTAAAATCTACTAATTCCTCCTAAATT
TTGATCAAAACAAAATAGTGGCAACCCTGTAATACCTGGCCCCAGCGAGA
CAGCAACCTGCCCAGCATGGTTAAATATTTTACATTGTGTGCAAAGGGTG
GCTTAAGGTTCCATTAAAATGTTTTTATTTTTATTCAAACAATACTGTTG
GACAAATTCCTTTTTTTTTGAAAAATTAACGAGATGAAATTGATCTTTAA
ATGTTTGTATTTAGTAAATCACCTGAAAAGAAAAGGTCCCACCCAATCTT
GTCCTCCACTGAGATCTAAAAATTTCTAAGTCCAACCTATAGTAACGGAA
AGTAAATCCAATCGACAGAACAGACTAGGGGGTGCAGACTATGTATTACA
AATACATACCTGCTATAAATCTTTACGTTTTCTTTCAGGTAAAAATCAAA
ATAATGGTGTTTTAATAAAGGAAAATTTCTAATAATGGCTGCCCAGCTGG
CACACAACGTTGTTTCAATGTTCATCTAACGTTAAATGGACGCTGTGAAC
GTTAGATAAACGTTGAAACAACGATGTGTGCCAGCTGGCTGGTCATGTTT
TAAGAATAAATAGAGGAGCTTTATTCAGTTTGAGAACAATCTTTCAACAA
TTTGGAAAAAGCACAGAAATTCGTAAGTATCAATTTCACTGATTTCTCTT
AAATGTGTGGGTGTGTGTGTTTGTAGTTTGAGATTGTTATCTACGAATTC
CAAAATATGGCTGTTAATTTCTTTTCTCTTAATTCAACGCTTATTTATTA
AAAATGGTATTCAGATGTTTCTGGTTTATGTTTCTTTATTTAATTAAATA
TCTTCTTTACAAGGGATAAATTCCGTGGAGGGGGGCCACTCAAGTTAAAC
GACCTACCGTACGTGCGGCCCTTAAGGGTCCCTTCTCCAAGCTTACCAAA
ATGCACAGTAAGGGTCAAAATGAGCAAAGATGAGAAAAGTACACTCTAAG
GAGTAAAATTTGACCATATCGTGCCTAAAAACGGTCAAATATCTTAAAGA
AAATGCACCGTAAGGGAAGTTTTTTTGCACAAATTTACTCAAATTTGGCT
AAATTTTCTTTGCACTGTAAGGGTCTGACTTCAAAGGCCTAATTTTAGGC
CGCACGTATGGTCGTTTTCTAATCGAGTGCCCCACCCCCACCGGGACAAA
ATTTGATAAGTAATTTCAGAAATCTTATAATCTTATTACATGCAAATCTT
AAAAGATTTGAAATATACTCCATAAGAAATTATAAATTCTTGGATACAGA
AAGTTTTACTAACACAATACTTGTCTTATGAATAATTTTTAAATTTTCAT
AATAATTTATTTTGCAAACAAAATAATTCATCCATACAACGTCACGTGAC
TTGGTATTGATTGATACGATGGTAAATGAATTTCGAAGGTATCATAAGGG
ATCTTTAAATTTGTTTTCGGGATGTCTTAGGATAAAGGCTGCCATCGCAA
TACACAAACTCATTATGGGAGAACACTTGGCATCGGTGGCAAAAACTATC
CTTAGGATCGTAGGTTCGTCCTCTGCACCTCTTTTCCTTGATCAAGACGA
AACCATTTCGACAACGCTCTGATTCGATATCATAAAGACGCTTTCTGAAA
TTGTAATAATTCGAAATATATCGTAATGAAACATTAAAAACAAACATCTT
GATATTGCGAATTAGTGGTTTAATTCTAAAAGCTAACCCAGCTGGCACAC
AACGTTGTTTCAACGTTTATCTAACGTTCACAACGTCCATATAACGTTAG
ATGAACGTTGAAACAACGTTGTGTGCCAGCTNATATCGTAATGAAACATT
AAAAACAAACATCTTGATATTGGGAATTAGTGGTTTGATTCTAAAAGCTA
AAGAAAATGATTCTTACAAACATTAACTCACCCACAGCACCGTTTGAAAG
GTTCTTTTGCCAGTTTCACACCATCACAACAAAATTCTGCAACTCGATCA
TATCTCTCTCCGCCACCTACAAAAATGTGCGAAAAAAGCTATACAATTTA
AAGTTATTCAAAACTTAACCGTCTGAAGCCNCATGTGCACAAAAAGCTAT
ACAATTAAAAGTTATTCAAAACTTAACCGTCTGAAGCCTTAGGAGAGTCC
CTATTTTAGATTTAAAACTTTTGTGTAGACTAAATTTTACCAATCAATGT
CCTCTGGCAAAAATCGCGTAAAAGTGGAAAGAATTTGCAAATGTCGTGAA
AGTTATCCACCAAAGAACAGTAGAACAGTATATCATGTATCACAAAAACC
TCGATGTAGTTGCGGATAGCAAATAAACAGTCGGTAGAGTCTTCAACAGC
AAAAAGCCGCCTGTGGTTCTTGTGCTACATTCACGTGATTGGCAAATACT
GAAAGGTTATCTTACAATATCTCCACTTCTGCTTTGCTGTAGGGCATCTG
TGGATCACTGGAGTCGGACGAATCTGTTCTCCGAGAGTTATACCAAATAG
AAGAACCACCAAAGATATTGATAGAACAAATCTAGCCATGATGATAGAAT
GTCGCACTTTGCCTATTATAGCTTGAATAACCACACTTAAAAGCACTAGC
AAATGTTATTTACACGTACTTAAGGTTGAAATTAAAGCAAGCGATGTGCA
GCTATGTCCAGGGGCGTATGTAGGATTTTTAGGATACGCTGCAAAAAAGA
TTCAGCTATATATAGTGATTCAGGAAATTTGCTCCAAGCATCTAAAGCCA
TTTGACGAGTCTTGACTTTTAACGTTTTGACACTAACAGCCATCAAATCC
CGGGCAAACCCTGCATTTTGACCTCATCCAGGTCTTTCNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNAACTCCGGGTAGGCTAAAAACAAGCTGCGACAAAA
AAGACTCTGGAGCATACCCTGCGAGTGCATGTTTTGCAGGGGTGTCGCAC
CGCCCCTGATGTCTACCGGCATTGGCCTTTTTATACTGATCGCTCTACCT
AGAAAAAAGTTTTTTGAACAAACACTATGTACCATATTATTTTAATGGTC
TTTTTGTGTTCCCTTTTTGCTTCATACGAGTCAAAGGTCGATATAATGCA
TTTTTCCTTCTTTCTTACTCAATTTCTTTGCCACTTTTTCCTATATATCC
CTGATAAAAATATTGTTAATGTCGATCCAACATCCGTTAAAATGAAAATC
GAAATAACATTTTGTGACAGGATTTTCTTACTTTAGTGGGTGGGGTTACC
ACCTTACCTAAAAGACGATGTTTGACTTGAATCTCCTAGAAAGTGGTTCC
ACAATATTTCCGCACCCATTGACCTTTTTTTCTTGTAACTCTCCCATGTA
TATCTGCTGCTATTTATTAGGGAATGACTTATAATGAAAATTGACTTACA
GATCTTTGGTGCTTTAAAGTTGTTATACCTGTTTCATATCAGACACATAT
TTCATATCAGGACAGTGTCTTTCTATTGTTATATTGTGCTGATATAAACA
AAACGATGTTTTTCTTTTCCTCTTTCTGACCAATCTTGCTCCACATCCGT
GTTAATCCAATGTGAAAAAGCTTGTGAGTTAAAAGTGATGAGCAAGCAAA
CGATATCAATCTTATTTAAAAACAAAACCTTTAGGAACCGAGATTTAATT
TTGAAAAGAAAAACAAGTATGGTATGTTTTGGTCTGAGATAGCCCTTGCA
AAGGGACTGGGTATTTTTAAATCAATAATATTGGTCTTTATCATTATTAA
TGAATACAACGTTCGTTTTCAAAGTAATTTTAGTTACCATCGGAATTGAA
TATCTATTGTTTGAACCATGGATTTATCATAGAGACTCTGGATAAACATC
GAATGAAACGGTGGAGAGTGAAACTGTTATCTTTCCACTGTTTCAGAAAA
GATTTTGAAAAATGATATACTCTATAATTTCTAAAAAATTCTCTAACTAT
TTTACTTCTGCTGGCCAAAAGTTTGAAAACAAGCTAGAATACAAAGCGGA
TACATGTTTTTTTATAAGCATATAAAAATCCGAAAACAGGCTCAGAGATG
CTTAGTTCGAAAGCCTAATAAAGCTAGGAAAATGCTTGAGGGATGCTTAT
ATCCAAAGCAAAAATTTAGGGAAATTCTGAAAAGTTTTAAAATTCCAGCC
AAAAAAAAGCCACAATCAGGAAAAAACATTTTTCATAGGCTTGCTATATG
CTTAATTTTTCCCCATATCTGAGCCTAGATATGCTTACAAGTGCAATGCT
TATAAAAAACATGTACATTTATTAAATCTGGTGTGAGCAAAACATCATCA
GACGAGTAAAATCAAACAAAATGCTTATAATGACACGACATTTTAGTTGG
GAAAGTTGTTCTTATATTTTTCCGAGAAGAGCTAAGATTGACATATGTTA
GACGTGTGTCTCATAGCTCAACTGTAGTATTAAAATCTTTTGGTGGCACG
TGGTGGCACGATGGATTTTTTGAGGTTGAAGTTTAGAAATTTCTGGTGTC
AATATTCAATTTCTTATACATAGGATGTTTTTGTATCTTTCTTGCGATTT
TGAACGTCATAACGACGTATATCGCTCTAAGTGTCTCTCAAAAAATATTT
ATTAAGTATAATACTGTTTTTATTCTCAAAAAATTGCCATTCCAATTTCA
GTTGTTATGTTTCAATACTTGACACATTGTTTGTCTAAAATGCGGACTGC
TATGAACCTCATGATTCTCTTCATGTTTTTGTTCAATTTCAGGTAAAAGG
AAATCTTCTGGTCTGTATTTTACACGTTGCTGAGATTTTTTACTACTACT
CAACCGAGCTGAAGATTGCCTTCTTGGTTGTTTCAAGTCTGTTGTTGATG
TTTTCCAAGTCGAAAGATTAGACCATGACCTGGCCCGTCTTATATGACGC
TTATCCAACGTGGCATTAGCCTGGAGCTGTGGAATTTCGTCGACATCTGA
GCTAGTGACAATGGACGCTGGTTGACAGGTAAGCAAACGATGACGTAATG
TTTTCCAATATTCTGGATCATTTTTCTCATCTTTATGCTCGTCCGGGATG
CTTCCGTTGCTTTTCGATTTCCGTAATTCGGTATGACTGACCGGTTTATA
TAGATTACTTGGAGATGAATTAGAACGATCTCGGAAANGACGCTTATCCA
ACGTGGCATTAGCCTGGAGCTGTGGAATTTCGTCGACATCTGAGCTAGTG
ACAATGGACGCTGGTTGACAGGTAAGCAAACGATGACGTAATGTTTTCCA
ATATTCTGGATCATTTTTCTCATCTTTATGCTCGTCCGGGATGCTTCCGT
TGCTTTTCGATTTCCGTAATTCGGTATGACTGACCGGTTTATATATATTA
CTTGGAGATGAATTAGAACGATCTCGGAAATTTGGCTCAACAGACAGACA
ACTAGCTGTGCATGGCCGATGTAGATTCTCATGACTTCCAGTTAAAAAGG
GACTTCGATTCTCTTTACCCTTGGAAAGGCCTCCTTTACTATTTATACAT
TCAGACTCAGCTGAACGTCGTCTCAAACTGTCTTTTAAAAGTGTTTTTCG
TATATCAGTATGCTCAACCTTGCCGGCTGTTGTTGCACTCAGAGGCGACT
GTGGTGGTGAGATGACAATTTGACATAGATTGTTATTGTTATTGGTTGTG
TTAGAATGTGTTGGCGGATGTGGAATGAAAATATTCTCGTGTTGTTGATG
GCGGTAGTGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038160XLOC_038160Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060739-exon-scaffold_348-1575043694:489870..489898TCONS_00060739-exon-scaffold_348-1575043694:489870..489898Clytia hemisphaericaexon
TCONS_00060739-exon-scaffold_348-1575043694:483171..483406TCONS_00060739-exon-scaffold_348-1575043694:483171..483406Clytia hemisphaericaexon
TCONS_00060739-exon-scaffold_348-1575043694:482437..482494TCONS_00060739-exon-scaffold_348-1575043694:482437..482494Clytia hemisphaericaexon
TCONS_00060739-exon-scaffold_348-1510915933:489870..489898TCONS_00060739-exon-scaffold_348-1510915933:489870..489898Clytia hemisphaericaexon
TCONS_00060739-exon-scaffold_348-1510915933:483171..483406TCONS_00060739-exon-scaffold_348-1510915933:483171..483406Clytia hemisphaericaexon
TCONS_00060739-exon-scaffold_348-1510915933:482437..482494TCONS_00060739-exon-scaffold_348-1510915933:482437..482494Clytia hemisphaericaexon
TCONS_00060739-exon-scaffold_348-1491911889:489870..489898TCONS_00060739-exon-scaffold_348-1491911889:489870..489898Clytia hemisphaericaexon
TCONS_00060739-exon-scaffold_348-1491911889:483171..483406TCONS_00060739-exon-scaffold_348-1491911889:483171..483406Clytia hemisphaericaexon
TCONS_00060739-exon-scaffold_348-1491911889:482437..482494TCONS_00060739-exon-scaffold_348-1491911889:482437..482494Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_348supercontigscaffold_348:482437..489898 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	1.25808	0	0	0	0.462566	0	0.281056	0.0843601	0	0	0.493801	0.263699	0.902185	0	0.0525279	0.38476	0	0	0.722859	0	0.867397	0.427421	0	0.581953	0.609424
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060739 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top