XLOC_038160 (gene) - C. hemisphaerica

Overview
NameXLOC_038160
Unique NameXLOC_038160
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_348:482437..489898-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_038160 ID=XLOC_038160|Name=XLOC_038160|organism=Clytia hemisphaerica|type=gene|length=7462bp|location=Sequence derived from alignment at scaffold_348:482437..489898- (Clytia hemisphaerica)
GGAGATTTTGGTAATGGAGTAGTCAGACGGTTTGTCATTTTTTTATGATT
TTTGATCAATACTCAAAGCTTATTACATCACTTGTGTTTAAATTATTGAA
ATTTTAGTGAAATCACTATATTCAATCAGGTACTCAATGGGTTTTTGAAA
AACGTTATTTCAATCGGATTAGATTTCGCGAGATCAAATTTTGCAAGCGA
AAAAAATCGCGAAACTTTCTGGATTTAATTTCGCGAGTCAGAGTTTTGAA
TAATTTCGAGTGGATTTAATTTCGCGAATAAGCCTGAACAAACAGCTGAA
AATAGCTATTTTTGCCACAAATGTAGACTTTGGACTGGTTTCTCCGCCGA
AAATGCGATTTTAAAAATTTTGTGGTGAATTTAATTTCGCGGGTCAGGAA
TCTCACACGTTTCGCGGAAATAGCAAAAATTTGCGAAGGTTAATCCGATT
AAAGTAGGTCAAAGAAACCTATATAAATCGTGAGAATCTTAATTTCTATA
AATAAACAATATTAGAGGGTTTTTATCTTCTCCTCGTAGAATGCTCAATA
AGTAAATAGAGCGTTACTATAATAAAGAGTTGACACAATCTCTGTATCAA
ACTCGGAGTTTCATGGTGCTCAGGCACCAATCATCAGTGAAAAGATTGGT
GCCTGAGCACCATGAAACTCTGAGTTTGAAACAGATATTGTGTCAACTCT
TTATTATAAATATTGTTCCTCTTTTTCCCGGTCACATTGTAATCAGCACT
AAAATCTCAGTCATTATATGGAGACAAAATTAATTTTCGCGAAGTCTTAG
CATACCGCTTCCTCAATTTACAGGGATTTTATTTTAAGAACGCATGCACT
AAAATTTTCTAAGTAATTATTAGAGACCGTCCGATTTTAATTTTCTCGGG
ACCGTTTAAAAAATCAAGAATCTCAAAATGAGTTAATATAAATTGGAGAA
AAAAGAAAATTTACTCAACTCCGAGTCCAAGTCCAAAATTATTAATTATT
TGGTTAAAGGTTCTATTTTTAGTGTTCCCGTTCAGGGTTGCCACGCCTCC
TAAAAATCCTAAATTCTCCTAAATTTTGAAAAGTCTCCTAAAATCTCCTT
AGGAAATTGAAATTTTGAATACTTTCTCCTAAAATCTCCTAAAAAATATT
TTACCAAGTTTTCAAAAATTCAATTTACTCTGATTNAAAAGTCTCCTAAA
ATCTCCTTAGGAAATTGAAATTTTGAATACTTTCTCCTAAAATCTCCTAA
AAAATATTTTACCATGTTTTCAAAAATCCAATTTACTCTGATTATCAAAT
TTTCATTGCTAAAAATGATCCTATTCATGGCATACATGATTGTTAACAAA
AGCTTTTTACTATGCTTAAAGGTCTTTAAAAACATTGGAAGTTATGAAAA
TTTTGCAGAATTTTCTCCTCAAAAATCCTAAAATTCTTTTAAAAAGTGTG
AAAATCTCCTCAAAACTCCTAAATTTTCCCCCCGTAATTTTCGGTTTCTC
CTAAAAAAATAGTTGAAAATCACCTAAAATCTACTAATTCCTCCTAAATT
TTGATCAAAACAAAATAGTGGCAACCCTGTAATACCTGGCCCCAGCGAGA
CAGCAACCTGCCCAGCATGGTTAAATATTTTACATTGTGTGCAAAGGGTG
GCTTAAGGTTCCATTAAAATGTTTTTATTTTTATTCAAACAATACTGTTG
GACAAATTCCTTTTTTTTTGAAAAATTAACGAGATGAAATTGATCTTTAA
ATGTTTGTATTTAGTAAATCACCTGAAAAGAAAAGGTCCCACCCAATCTT
GTCCTCCACTGAGATCTAAAAATTTCTAAGTCCAACCTATAGTAACGGAA
AGTAAATCCAATCGACAGAACAGACTAGGGGGTGCAGACTATGTATTACA
AATACATACCTGCTATAAATCTTTACGTTTTCTTTCAGGTAAAAATCAAA
ATAATGGTGTTTTAATAAAGGAAAATTTCTAATAATGGCTGCCCAGCTGG
CACACAACGTTGTTTCAATGTTCATCTAACGTTAAATGGACGCTGTGAAC
GTTAGATAAACGTTGAAACAACGATGTGTGCCAGCTGGCTGGTCATGTTT
TAAGAATAAATAGAGGAGCTTTATTCAGTTTGAGAACAATCTTTCAACAA
TTTGGAAAAAGCACAGAAATTCGTAAGTATCAATTTCACTGATTTCTCTT
AAATGTGTGGGTGTGTGTGTTTGTAGTTTGAGATTGTTATCTACGAATTC
CAAAATATGGCTGTTAATTTCTTTTCTCTTAATTCAACGCTTATTTATTA
AAAATGGTATTCAGATGTTTCTGGTTTATGTTTCTTTATTTAATTAAATA
TCTTCTTTACAAGGGATAAATTCCGTGGAGGGGGGCCACTCAAGTTAAAC
GACCTACCGTACGTGCGGCCCTTAAGGGTCCCTTCTCCAAGCTTACCAAA
ATGCACAGTAAGGGTCAAAATGAGCAAAGATGAGAAAAGTACACTCTAAG
GAGTAAAATTTGACCATATCGTGCCTAAAAACGGTCAAATATCTTAAAGA
AAATGCACCGTAAGGGAAGTTTTTTTGCACAAATTTACTCAAATTTGGCT
AAATTTTCTTTGCACTGTAAGGGTCTGACTTCAAAGGCCTAATTTTAGGC
CGCACGTATGGTCGTTTTCTAATCGAGTGCCCCACCCCCACCGGGACAAA
ATTTGATAAGTAATTTCAGAAATCTTATAATCTTATTACATGCAAATCTT
AAAAGATTTGAAATATACTCCATAAGAAATTATAAATTCTTGGATACAGA
AAGTTTTACTAACACAATACTTGTCTTATGAATAATTTTTAAATTTTCAT
AATAATTTATTTTGCAAACAAAATAATTCATCCATACAACGTCACGTGAC
TTGGTATTGATTGATACGATGGTAAATGAATTTCGAAGGTATCATAAGGG
ATCTTTAAATTTGTTTTCGGGATGTCTTAGGATAAAGGCTGCCATCGCAA
TACACAAACTCATTATGGGAGAACACTTGGCATCGGTGGCAAAAACTATC
CTTAGGATCGTAGGTTCGTCCTCTGCACCTCTTTTCCTTGATCAAGACGA
AACCATTTCGACAACGCTCTGATTCGATATCATAAAGACGCTTTCTGAAA
TTGTAATAATTCGAAATATATCGTAATGAAACATTAAAAACAAACATCTT
GATATTGCGAATTAGTGGTTTAATTCTAAAAGCTAACCCAGCTGGCACAC
AACGTTGTTTCAACGTTTATCTAACGTTCACAACGTCCATATAACGTTAG
ATGAACGTTGAAACAACGTTGTGTGCCAGCTNATATCGTAATGAAACATT
AAAAACAAACATCTTGATATTGGGAATTAGTGGTTTGATTCTAAAAGCTA
AAGAAAATGATTCTTACAAACATTAACTCACCCACAGCACCGTTTGAAAG
GTTCTTTTGCCAGTTTCACACCATCACAACAAAATTCTGCAACTCGATCA
TATCTCTCTCCGCCACCTACAAAAATGTGCGAAAAAAGCTATACAATTTA
AAGTTATTCAAAACTTAACCGTCTGAAGCCNCATGTGCACAAAAAGCTAT
ACAATTAAAAGTTATTCAAAACTTAACCGTCTGAAGCCTTAGGAGAGTCC
CTATTTTAGATTTAAAACTTTTGTGTAGACTAAATTTTACCAATCAATGT
CCTCTGGCAAAAATCGCGTAAAAGTGGAAAGAATTTGCAAATGTCGTGAA
AGTTATCCACCAAAGAACAGTAGAACAGTATATCATGTATCACAAAAACC
TCGATGTAGTTGCGGATAGCAAATAAACAGTCGGTAGAGTCTTCAACAGC
AAAAAGCCGCCTGTGGTTCTTGTGCTACATTCACGTGATTGGCAAATACT
GAAAGGTTATCTTACAATATCTCCACTTCTGCTTTGCTGTAGGGCATCTG
TGGATCACTGGAGTCGGACGAATCTGTTCTCCGAGAGTTATACCAAATAG
AAGAACCACCAAAGATATTGATAGAACAAATCTAGCCATGATGATAGAAT
GTCGCACTTTGCCTATTATAGCTTGAATAACCACACTTAAAAGCACTAGC
AAATGTTATTTACACGTACTTAAGGTTGAAATTAAAGCAAGCGATGTGCA
GCTATGTCCAGGGGCGTATGTAGGATTTTTAGGATACGCTGCAAAAAAGA
TTCAGCTATATATAGTGATTCAGGAAATTTGCTCCAAGCATCTAAAGCCA
TTTGACGAGTCTTGACTTTTAACGTTTTGACACTAACAGCCATCAAATCC
CGGGCAAACCCTGCATTTTGACCTCATCCAGGTCTTTCNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNAACTCCGGGTAGGCTAAAAACAAGCTGCGACAAAA
AAGACTCTGGAGCATACCCTGCGAGTGCATGTTTTGCAGGGGTGTCGCAC
CGCCCCTGATGTCTACCGGCATTGGCCTTTTTATACTGATCGCTCTACCT
AGAAAAAAGTTTTTTGAACAAACACTATGTACCATATTATTTTAATGGTC
TTTTTGTGTTCCCTTTTTGCTTCATACGAGTCAAAGGTCGATATAATGCA
TTTTTCCTTCTTTCTTACTCAATTTCTTTGCCACTTTTTCCTATATATCC
CTGATAAAAATATTGTTAATGTCGATCCAACATCCGTTAAAATGAAAATC
GAAATAACATTTTGTGACAGGATTTTCTTACTTTAGTGGGTGGGGTTACC
ACCTTACCTAAAAGACGATGTTTGACTTGAATCTCCTAGAAAGTGGTTCC
ACAATATTTCCGCACCCATTGACCTTTTTTTCTTGTAACTCTCCCATGTA
TATCTGCTGCTATTTATTAGGGAATGACTTATAATGAAAATTGACTTACA
GATCTTTGGTGCTTTAAAGTTGTTATACCTGTTTCATATCAGACACATAT
TTCATATCAGGACAGTGTCTTTCTATTGTTATATTGTGCTGATATAAACA
AAACGATGTTTTTCTTTTCCTCTTTCTGACCAATCTTGCTCCACATCCGT
GTTAATCCAATGTGAAAAAGCTTGTGAGTTAAAAGTGATGAGCAAGCAAA
CGATATCAATCTTATTTAAAAACAAAACCTTTAGGAACCGAGATTTAATT
TTGAAAAGAAAAACAAGTATGGTATGTTTTGGTCTGAGATAGCCCTTGCA
AAGGGACTGGGTATTTTTAAATCAATAATATTGGTCTTTATCATTATTAA
TGAATACAACGTTCGTTTTCAAAGTAATTTTAGTTACCATCGGAATTGAA
TATCTATTGTTTGAACCATGGATTTATCATAGAGACTCTGGATAAACATC
GAATGAAACGGTGGAGAGTGAAACTGTTATCTTTCCACTGTTTCAGAAAA
GATTTTGAAAAATGATATACTCTATAATTTCTAAAAAATTCTCTAACTAT
TTTACTTCTGCTGGCCAAAAGTTTGAAAACAAGCTAGAATACAAAGCGGA
TACATGTTTTTTTATAAGCATATAAAAATCCGAAAACAGGCTCAGAGATG
CTTAGTTCGAAAGCCTAATAAAGCTAGGAAAATGCTTGAGGGATGCTTAT
ATCCAAAGCAAAAATTTAGGGAAATTCTGAAAAGTTTTAAAATTCCAGCC
AAAAAAAAGCCACAATCAGGAAAAAACATTTTTCATAGGCTTGCTATATG
CTTAATTTTTCCCCATATCTGAGCCTAGATATGCTTACAAGTGCAATGCT
TATAAAAAACATGTACATTTATTAAATCTGGTGTGAGCAAAACATCATCA
GACGAGTAAAATCAAACAAAATGCTTATAATGACACGACATTTTAGTTGG
GAAAGTTGTTCTTATATTTTTCCGAGAAGAGCTAAGATTGACATATGTTA
GACGTGTGTCTCATAGCTCAACTGTAGTATTAAAATCTTTTGGTGGCACG
TGGTGGCACGATGGATTTTTTGAGGTTGAAGTTTAGAAATTTCTGGTGTC
AATATTCAATTTCTTATACATAGGATGTTTTTGTATCTTTCTTGCGATTT
TGAACGTCATAACGACGTATATCGCTCTAAGTGTCTCTCAAAAAATATTT
ATTAAGTATAATACTGTTTTTATTCTCAAAAAATTGCCATTCCAATTTCA
GTTGTTATGTTTCAATACTTGACACATTGTTTGTCTAAAATGCGGACTGC
TATGAACCTCATGATTCTCTTCATGTTTTTGTTCAATTTCAGGTAAAAGG
AAATCTTCTGGTCTGTATTTTACACGTTGCTGAGATTTTTTACTACTACT
CAACCGAGCTGAAGATTGCCTTCTTGGTTGTTTCAAGTCTGTTGTTGATG
TTTTCCAAGTCGAAAGATTAGACCATGACCTGGCCCGTCTTATATGACGC
TTATCCAACGTGGCATTAGCCTGGAGCTGTGGAATTTCGTCGACATCTGA
GCTAGTGACAATGGACGCTGGTTGACAGGTAAGCAAACGATGACGTAATG
TTTTCCAATATTCTGGATCATTTTTCTCATCTTTATGCTCGTCCGGGATG
CTTCCGTTGCTTTTCGATTTCCGTAATTCGGTATGACTGACCGGTTTATA
TAGATTACTTGGAGATGAATTAGAACGATCTCGGAAANGACGCTTATCCA
ACGTGGCATTAGCCTGGAGCTGTGGAATTTCGTCGACATCTGAGCTAGTG
ACAATGGACGCTGGTTGACAGGTAAGCAAACGATGACGTAATGTTTTCCA
ATATTCTGGATCATTTTTCTCATCTTTATGCTCGTCCGGGATGCTTCCGT
TGCTTTTCGATTTCCGTAATTCGGTATGACTGACCGGTTTATATATATTA
CTTGGAGATGAATTAGAACGATCTCGGAAATTTGGCTCAACAGACAGACA
ACTAGCTGTGCATGGCCGATGTAGATTCTCATGACTTCCAGTTAAAAAGG
GACTTCGATTCTCTTTACCCTTGGAAAGGCCTCCTTTACTATTTATACAT
TCAGACTCAGCTGAACGTCGTCTCAAACTGTCTTTTAAAAGTGTTTTTCG
TATATCAGTATGCTCAACCTTGCCGGCTGTTGTTGCACTCAGAGGCGACT
GTGGTGGTGAGATGACAATTTGACATAGATTGTTATTGTTATTGGTTGTG
TTAGAATGTGTTGGCGGATGTGGAATGAAAATATTCTCGTGTTGTTGATG
GCGGTAGTGGTG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00060741TCONS_00060741Clytia hemisphaericatranscript
TCONS_00060740TCONS_00060740Clytia hemisphaericatranscript
TCONS_00060739TCONS_00060739Clytia hemisphaericatranscript
TCONS_00060738TCONS_00060738Clytia hemisphaericatranscript
TCONS_00060737TCONS_00060737Clytia hemisphaericatranscript
TCONS_00060736TCONS_00060736Clytia hemisphaericatranscript
TCONS_00060735TCONS_00060735Clytia hemisphaericatranscript
TCONS_00060734TCONS_00060734Clytia hemisphaericatranscript
TCONS_00060733TCONS_00060733Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_348supercontigscaffold_348:482437..489898 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.66	12.48	9.28	5.48	2.8	2.4	2.52	3.07	7.98	7.99	9.13	6.04	4.37	2.82	4.98	5.64	10.31	10.58	1.74	2.11	9.66	8.25	14.28	14.86	2.68	6.85	9.95	5.71	7.24	8.34