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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060729 ID=TCONS_00060729|Name=TCONS_00060729|organism=Clytia hemisphaerica|type=transcript|length=1380bp
ACTGTATTGAATTCTGTGTATGTAGAGGTGAATCTGAAAGTTACTTTCAT
TTTACAAAGTTGTAAACAAGTTTTTTCATGAGAGCTTTTTGAACATATTT
TCCACTATCACAAAAGGAGTGGAAATGGCTCCGCCAAACCAGTATCAAGA
GAATCAGGATCAAGAAAATCTTCCACCAGGGATAGTTACCATCCTCCATT
TGTTGGATAATGATGATGTTCTTCAAAGATTCATCGCTGAAATGGATAGG
TTTACTGAGAAATGGTTTATACGTCTTGTTGAATGGTTGATTGCTAAAAG
AATCATTAACATTGATCGTCAAAAATTTAACTGTTTGGAACGAAATTTCT
ATGGTGGTGGTAGCTCAACTATGGCATGGCTTAATAAAATGGCAACACAT
AAACCTGGAGAACAAGTCATTCGTTTAAGAGAATGTGCACGCATTAACGA
ACGTGGCGATGTATTAAAAATCCTACAAAATATCGCAAATGATTTCCTAA
TATCTAAATTAAACCATGGGACCAGAGCACAGATTGCAGATTGTCTTGAT
GAGAGGGTTGTTGCGGCTGCTGATTGGTCGGCATTTGCATCGCACTTTGG
ATATGGTTACAAAGATCGACAGCAATTTAAAGCAGCTCAAATACCACCAA
ATAGTTTCAGTCCAACTATCGCTCTCTTGGATATCCTTATCCACGAGAAT
GAAGAATTGCCAATTGACCATATCATCAGATGGGCTAAATCCAGAGAAGC
CGGTCGTAATGATATAGGAAAGCTATTAgaagaattcaaaatttcctttt
tggAAAGAAGAAACCAGGCTAGAGTTGAAGGGAGAAACCAAGCTGGAAAT
GACGGGGGAGGAAACCAGCGTCCAGTAGCTGATGGGGATGATGTACGAGC
TGAGAATATGAGGCTCGTTATGAACGCACCTCAAAACCCTCCCCCAGGGG
CACCCCAGTCTAATGATAATCAAAATGTGCCTGATAGATCACAATCAATT
GGGAACGCAGACCATGTAGATGCCGCAAATGGTCACGATGGTAATCCACC
TCTTGGTGATGACAATGTTGATAGATTAGCTGATAGAATATCAAATTCTC
TAAGGTTGCGTCCTGATGGCACACCAGACCTCTCATGATCAATCGACTCC
GCACTTTACTGATAACTGATAACTCATTTCAATTGTAAATGACCACTGCT
CCTCATACCAAAAATACTTGACATGTTCCCCTCGAATCTTGTCcatgaag
aaataattttttgatacaattcttcaatttttctgtTTGTAATATAAGGA
GCAATTCTGTAAATTGGTTTATCATATCATGcgatttatcaaataaatta
aaactttttcacAAATGACCTCAAATACGG Run BLAST on NCBI protein sequence of TCONS_00060729-protein >TCONS_00060729-protein ID=TCONS_00060729-protein|Name=TCONS_00060729-protein|organism=Clytia hemisphaerica|type=polypeptide|length=337bp
MAPPNQYQENQDQENLPPGIVTILHLLDNDDVLQRFIAEMDRFTEKWFIR
LVEWLIAKRIINIDRQKFNCLERNFYGGGSSTMAWLNKMATHKPGEQVIR
LRECARINERGDVLKILQNIANDFLISKLNHGTRAQIADCLDERVVAAAD
WSAFASHFGYGYKDRQQFKAAQIPPNSFSPTIALLDILIHENEELPIDHI
IRWAKSREAGRNDIGKLLEEFKISFLERRNQARVEGRNQAGNDGGGNQRP
VADGDDVRAENMRLVMNAPQNPPPGAPQSNDNQNVPDRSQSIGNADHVDA
ANGHDGNPPLGDDNVDRLADRISNSLRLRPDGTPDLS Run BLAST on NCBI transcript from alignment at scaffold_348:395677..397633- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060729 ID=TCONS_00060729|Name=TCONS_00060729|organism=Clytia hemisphaerica|type=transcript|length=1957bp|location=Sequence derived from alignment at scaffold_348:395677..397633- (Clytia hemisphaerica)
ACTGTATTGAATTCTGTGTATGTAGAGGTGAATCTGAAAGTTACTTTCAT
TTTACAAAGTTGTAAACAAGTTTTTTCATGAGAGCTTTTTGAACATATTT
TCCACTATCACAAAAGGAGTGGAAATGGCTCCGCCAAACCAGTATCAAGA
GAATCAGGATCAAGAAAATCTTCCACCAGGTAGGATGCCATATATGGTAA
CTAGCAGTTAATGTCACTTTCAATCTAGCGTTTGTATAAAAACTGAGCGG
GCCTCACAGCTGACACACAACGTTGTTTCAACGTTCATTTGACGTTATAT
GGATGTTGTGAACGTTAGATAAACGTTGAAACAACTGTAGGAAATAAGTG
TTTTCAAATCAAACATAAGAGATTCACTCTAGCCTTTAGCTTTATCACAT
TGGCCTCGTGCGTTGATGATGATTATACACCCCCTTCTCACAGACCCACT
GGGACCCCTTCCCACTAGAAAAATTGTCCAAAATATCGTCCCCGGTGGAA
AATTATCCTAAATTTTTGTGTCTCCACTGAAAATAATAACTCAACTCAAC
TAATTCTCACTGCAAAATATTATGCTATTTTTGCCATCCCCACTGAATTT
TCTGACTTGAAAAACAAAAGAATTGAAATCCCCAGCCATAAAAATGATTG
GCATATTATCGAATTTCAGACCGATATTTTTATCCCCACTGGCTGAAAAA
GAAGGGTGTGTGATTATTTTATAGAAACAATGACTCTACATTTCTTCACT
TTTTAGGGATAGTTACCATCCTCCATTTGTTGGATAATGATGATGTTCTT
CAAAGATTCATCGCTGAAATGGATAGGTTTACTGAGAAATGGTTTATACG
TCTTGTTGAATGGTTGATTGCTAAAAGAATCATTAACATTGATCGTCAAA
AATTTAACTGTTTGGAACGAAATTTCTATGGTGGTGGTAGCTCAACTATG
GCATGGCTTAATAAAATGGCAACACATAAACCTGGAGAACAAGTCATTCG
TTTAAGAGAATGTGCACGCATTAACGAACGTGGCGATGTATTAAAAATCC
TACAAAATATCGCAAATGATTTCCTAATATCTAAATTAAACCATGGGACC
AGAGCACAGATTGCAGATTGTCTTGATGAGAGGGTTGTTGCGGCTGCTGA
TTGGTCGGCATTTGCATCGCACTTTGGATATGGTTACAAAGATCGACAGC
AATTTAAAGCAGCTCAAATACCACCAAATAGTTTCAGTCCAACTATCGCT
CTCTTGGATATCCTTATCCACGAGAATGAAGAATTGCCAATTGACCATAT
CATCAGATGGGCTAAATCCAGAGAAGCCGGTCGTAATGATATAGGAAAGC
TATTAGAAGAATTCAAAATTTCCTTTTTGGAAAGAAGAAACCAGGCTAGA
GTTGAAGGGAGAAACCAAGCTGGAAATGACGGGGGAGGAAACCAGCGTCC
AGTAGCTGATGGGGATGATGTACGAGCTGAGAATATGAGGCTCGTTATGA
ACGCACCTCAAAACCCTCCCCCAGGGGCACCCCAGTCTAATGATAATCAA
AATGTGCCTGATAGATCACAATCAATTGGGAACGCAGACCATGTAGATGC
CGCAAATGGTCACGATGGTAATCCACCTCTTGGTGATGACAATGTTGATA
GATTAGCTGATAGAATATCAAATTCTCTAAGGTTGCGTCCTGATGGCACA
CCAGACCTCTCATGATCAATCGACTCCGCACTTTACTGATAACTGATAAC
TCATTTCAATTGTAAATGACCACTGCTCCTCATACCAAAAATACTTGACA
TGTTCCCCTCGAATCTTGTCCATGAAGAAATAATTTTTTGATACAATTCT
TCAATTTTTCTGTTTGTAATATAAGGAGCAATTCTGTAAATTGGTTTATC
ATATCATGCGATTTATCAAATAAATTAAAACTTTTTCACAAATGACCTCA
AATACGG Coding sequence (CDS) from alignment at scaffold_348:395677..397633- >TCONS_00060729 ID=TCONS_00060729|Name=TCONS_00060729|organism=Clytia hemisphaerica|type=CDS|length=2028bp|location=Sequence derived from alignment at scaffold_348:395677..397633- (Clytia hemisphaerica)
GGATAGTTACCATCCTCCATTTGTTGGATAATGATGATGTTCTTCAAAGA
TTCATCGCTGAAATGGATAGGTTTACTGAGAAATGGTTTATACGTCTTGT
TGAATGGTTGATTGCTAAAAGAATCATTAACATTGATCGTCAAAAATTTA
ACTGTTTGGAACGAAATTTCTATGGTGGTGGTAGCTCAACTATGGCATGG
CTTAATAAAATGGCAACACATAAACCTGGAGAACAAGTCATTCGTTTAAG
AGAATGTGCACGCATTAACGAACGTGGCGATGTATTAAAAATCCTACAAA
ATATCGCAAATGATTTCCTAATATCTAAATTAAACCATGGGACCAGAGCA
CAGATTGCAGATTGTCTTGATGAGAGGGTTGTTGCGGCTGCTGATTGGTC
GGCATTTGCATCGCACTTTGGATATGGTTACAAAGATCGACAGCAATTTA
AAGCAGCTCAAATACCACCAAATAGTTTCAGTCCAACTATCGCTCTCTTG
GATATCCTTATCCACGAGAATGAAGAATTGCCAATTGACCATATCATCAG
ATGGGCTAAATCCAGAGAAGCCGGTCGTAATGATATAGGAAAGCTATTAG
AAGAATTCAAAATTTCCTTTTTGGAAAGAAGAAACCAGGCTAGAGTTGAA
GGGAGAAACCAAGCTGGAAATGACGGGGGAGGAAACCAGCGTCCAGTAGC
TGATGGGGATGATGTACGAGCTGAGAATATGAGGCTCGTTATGAACGCAC
CTCAAAACCCTCCCCCAGGGGCACCCCAGTCTAATGATAATCAAAATGTG
CCTGATAGATCACAATCAATTGGGAACGCAGACCATGTAGATGCCGCAAA
TGGTCACGATGGTAATCCACCTCTTGGTGATGACAATGTTGATAGATTAG
CTGATAGAATATCAAATTCTCTAAGGTTGCGTCCTGATGGCACACCAGAC
CTCTCATGAATGGCTCCGCCAAACCAGTATCAAGAGAATCAGGATCAAGA
AAATCTTCCACCAGGGATAGTTACCATCCTCCATTTGTTGGATAATGATG
ATGTTCTTCAAAGATTCATCGCTGAAATGGATAGGTTTACTGAGAAATGG
TTTATACGTCTTGTTGAATGGTTGATTGCTAAAAGAATCATTAACATTGA
TCGTCAAAAATTTAACTGTTTGGAACGAAATTTCTATGGTGGTGGTAGCT
CAACTATGGCATGGCTTAATAAAATGGCAACACATAAACCTGGAGAACAA
GTCATTCGTTTAAGAGAATGTGCACGCATTAACGAACGTGGCGATGTATT
AAAAATCCTACAAAATATCGCAAATGATTTCCTAATATCTAAATTAAACC
ATGGGACCAGAGCACAGATTGCAGATTGTCTTGATGAGAGGGTTGTTGCG
GCTGCTGATTGGTCGGCATTTGCATCGCACTTTGGATATGGTTACAAAGA
TCGACAGCAATTTAAAGCAGCTCAAATACCACCAAATAGTTTCAGTCCAA
CTATCGCTCTCTTGGATATCCTTATCCACGAGAATGAAGAATTGCCAATT
GACCATATCATCAGATGGGCTAAATCCAGAGAAGCCGGTCGTAATGATAT
AGGAAAGCTATTAGAAGAATTCAAAATTTCCTTTTTGGAAAGAAGAAACC
AGGCTAGAGTTGAAGGGAGAAACCAAGCTGGAAATGACGGGGGAGGAAAC
CAGCGTCCAGTAGCTGATGGGGATGATGTACGAGCTGAGAATATGAGGCT
CGTTATGAACGCACCTCAAAACCCTCCCCCAGGGGCACCCCAGTCTAATG
ATAATCAAAATGTGCCTGATAGATCACAATCAATTGGGAACGCAGACCAT
GTAGATGCCGCAAATGGTCACGATGGTAATCCACCTCTTGGTGATGACAA
TGTTGATAGATTAGCTGATAGAATATCAAATTCTCTAAGGTTGCGTCCTG
ATGGCACACCAGACCTCTCATGAATGGCTCCGCCAAACCAGTATCAAGAG
AATCAGGATCAAGAAAATCTTCCACCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060729-exon-scaffold_348-1575043694:397455..397633 | TCONS_00060729-exon-scaffold_348-1575043694:397455..397633 | Clytia hemisphaerica | exon |
| TCONS_00060729-exon-scaffold_348-1575043694:395677..396877 | TCONS_00060729-exon-scaffold_348-1575043694:395677..396877 | Clytia hemisphaerica | exon |
| TCONS_00060729-exon-scaffold_348-1510915933:397455..397633 | TCONS_00060729-exon-scaffold_348-1510915933:397455..397633 | Clytia hemisphaerica | exon |
| TCONS_00060729-exon-scaffold_348-1510915933:395677..396877 | TCONS_00060729-exon-scaffold_348-1510915933:395677..396877 | Clytia hemisphaerica | exon |
| TCONS_00060729-exon-scaffold_348-1491911889:397455..397633 | TCONS_00060729-exon-scaffold_348-1491911889:397455..397633 | Clytia hemisphaerica | exon |
| TCONS_00060729-exon-scaffold_348-1491911889:395677..396877 | TCONS_00060729-exon-scaffold_348-1491911889:395677..396877 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_348 | supercontig | scaffold_348:395677..397633 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR011029 | DEATH-like_dom |
Blast
The following BLAST results are available for this feature:
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