TCONS_00060728 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060728
Unique NameTCONS_00060728
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1531

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060728 ID=TCONS_00060728|Name=TCONS_00060728|organism=Clytia hemisphaerica|type=transcript|length=1531bp
AAAGGGAGTCTTGTTGAGGGCTTCAAGTTTAAATTTCTTTTACCGGCTGC
TGAGAAGAGGTGATAGGACAACGCTGAAGAGATTGAAACAGTTGCTTCAA
AGACCGAGATTTTGTTTCCAGTTTTTATATTCAATATTTGAGCACGATAT
TTTATTTCATTAAGAGATTGTCTAATAAACTAATTTTATCAAAACGACGT
GGAGGCTTCAACCAAGAAAGTCTATACGATCTCCCGACCGAAAATCGTGC
GTAGAGAATCACGAGATACTGACTGTTCAATCTCTATGATGATTTCACCA
AGGTTATTCATCTGTTTGGTTTTCTTGGCGACTGCATATTCTGCTTGTTT
GAATGACCGAGAAGCAGATACAACCATTGGTGCAGGGAATGTCAAGAAAG
CTTTCAATGAAGACCAGGAGCAGATTGCCAGAGTTGTCAGTCAAACCAAT
GTGGAAAATTCATTGATCAATAATTCTGGTAAACTGGTGAACAAAGACGT
CAAATCTGCCAGCAAAGCAAATATCCAAAGCCCTGGAAAGAAAGAATCCA
CCAATATTGATGAAGAAGATTCTTCTGTACTTACCAAAGATGAATTGTCC
AAGAAAGGCGATTGTATGTGTATTTATAACAATTTGATCTGTGGGAATCA
CAGAGTTGGGTTTTGCCAAGACCGTCGACACGGGCGAAAAAGAGACTCGG
AACTAACCAAGAAAGGTGATTGTATGTGCATGTATAATAATTTGATTTGC
GGTAACCGTAGAGTCGGGTTTTGCCAAGACCGTCGACACGGACGAAAAAG
AGACTCGGAACTAACAAAGAAAGGTGATTGTATGTGCATGTATAATAATT
TGATTTGCGGGAATCGTAGAGTCGGGTTTTGCCAGGACCGTCGACACGGG
CGAAAAAGAGACTCGGAACTAACAAAGAAAGGTGATTGTATGTGCATGTA
TAATAATTTGATTTGCGGGAATCGTAGAGTCGGGTTTTGCCAGGACCGTC
GACACGGGCGAAAAAGAGACTCGGAACTAACAAAGAAAGGTGATTGTATG
TGCATGTATAATAATTTGATTTGCGGGAATCGTAGAGTCGGGTTTTGCCA
ACATCGCCGGCATGGGCGAAAAAGAGACTCGGAACTAACAAAGAAAAGCG
GTGGTTGTGTATGCATTTACAATAACCTGATCTGTGGAGGACAAATGCTT
GGTTTTTGCCAAGATAGAAGAAATGGTCGAagaactgctgactcagcagg
aAATGACATTGGGGAGTTCAAGAGAAGTGATTGCATGTGTTTTCACAATG
AGCTTCTCTGTGGTGGACATCGTATTGGTTTCTGCCAAGAACACTGATTT
ATTAATCATGTTATCGGTAGAAAAATTTGTCGgtgaaaagtgacaaaaaa
tcaaTTGGTGACAAAACAATCTTACCTACGAATATATTTTTTGCGGACGA
ATTTTTTGACCGACGAATTTATTTTTGACCGACAAATTTTCTACCGATAA
AGTATGTTAGTTTATTACCACTCAAATAACT
Run BLAST on NCBI

protein sequence of TCONS_00060728-protein

>TCONS_00060728-protein ID=TCONS_00060728-protein|Name=TCONS_00060728-protein|organism=Clytia hemisphaerica|type=polypeptide|length=353bp
MMISPRLFICLVFLATAYSACLNDREADTTIGAGNVKKAFNEDQEQIARV
VSQTNVENSLINNSGKLVNKDVKSASKANIQSPGKKESTNIDEEDSSVLT
KDELSKKGDCMCIYNNLICGNHRVGFCQDRRHGRKRDSELTKKGDCMCMY
NNLICGNRRVGFCQDRRHGRKRDSELTKKGDCMCMYNNLICGNRRVGFCQ
DRRHGRKRDSELTKKGDCMCMYNNLICGNRRVGFCQDRRHGRKRDSELTK
KGDCMCMYNNLICGNRRVGFCQHRRHGRKRDSELTKKSGGCVCIYNNLIC
GGQMLGFCQDRRNGRRTADSAGNDIGEFKRSDCMCFHNELLCGGHRIGFC
QEH
Run BLAST on NCBI

transcript from alignment at scaffold_348:257697..259335-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060728 ID=TCONS_00060728|Name=TCONS_00060728|organism=Clytia hemisphaerica|type=transcript|length=1639bp|location=Sequence derived from alignment at scaffold_348:257697..259335- (Clytia hemisphaerica)
AAAGGGAGTCTTGTTGAGGGCTTCAAGTTTAAATTTCTTTTACCGGCTGC
TGAGAAGAGGTGATAGGACAACGCTGAAGAGATTGAAACAGTTGCTTCAA
AGACCGAGATTTTGTTTCCAGTTTTTATATTCAATATTTGAGCACGATAT
TTTATTTCATTAAGAGATTGTCTAATAAACTAATTTTATCAAAACGACGT
GGAGGCTTCAACCAAGAAAGTCTATACGATCTCCCGACCGAAAATCGTGC
GTAGAGAATCACGAGATACTGACTGTTCAATCTCTATGATGATTTCACCA
AGGTTATTCATCTGTTTGGTTTTCTTGGCGACTGCATATTCTGCTTGTTT
GAATGACCGAGAAGCAGATACAACCATTGGTGCAGGGAATGTCAAGAAAG
CTTTCAATGAAGACCAGGAGCAGATTGCCAGAGTTGTCAGTCAAACCAAT
GTGGAAAATTCATTGATCAATAATTCTGGTAAACTGGTGAACAAAGACGT
CAAATCTGCCAGCAAAGCAAATATCCAAAGCCCTGGAAAGAAAGAATCCA
CCAATATTGATGAAGAAGATTCTTCTGTACTTACCAAAGATGAATTGTCC
AAGAAAGGCGATTGTATGTGTATTTATAACAATTTGATCTGTGGGAATCA
CAGAGTTGGGTTTTGCCAAGACCGTCGACACGGGCGAAAAAGAGACTCGG
AACTAACCAAGAAAGGCGATTGTATGTGCATGTATAATAATTTGATTTGC
GGTAACCGTAGGGTCGGGTTTTGCCAAGACCGTCGACACGGGCGAAAAAG
AGACTCGGAACTAACCAAGAAAGGTGATTGTATGTGCATGTATAATAATT
TGATTTGCGGTAACCGTAGAGTCGGGTTTTGCCAAGACCGTCGACACGGA
CGAAAAAGAGACTCGGAACTAACAAAGAAAGGTGATTGTATGTGCATGTA
TAATAATTTGATTTGCGGGAATCGTAGAGTCGGGTTTTGCCAGGACCGTC
GACACGGGCGAAAAAGAGACTCGGAACTAACAAAGAAAGGTGATTGTATG
TGCATGTATAATAATTTGATTTGCGGGAATCGTAGAGTCGGGTTTTGCCA
GGACCGTCGACACGGGCGAAAAAGAGACTCGGAACTAACAAAGAAAGGTG
ATTGTATGTGCATGTATAATAATTTGATTTGCGGGAATCGTAGAGTCGGG
TTTTGCCAACATCGCCGGCATGGGCGAAAAAGAGACTCGGAACTAACAAA
GAAAAGCGGTGGTTGTGTATGCATTTACAATAACCTGATCTGTGGAGGAC
AAATGCTTGGTTTTTGCCAAGATAGAAGAAATGGTCGAAGAACTGCTGAC
TCAGCAGGAAATGACATTGGGGAGTTCAAGAGAAGTGATTGCATGTGTTT
TCACAATGAGCTTCTCTGTGGTGGACATCGTATTGGTTTCTGCCAAGAAC
ACTGATTTATTAATCATGTTATCGGTAGAAAAATTTGTCGGTGAAAAGTG
ACAAAAAATCAATTGGTGACAAAACAATCTTACCTACGAATATATTTTTT
GCGGACGAATTTTTTGACCGACGAATTTATTTTTGACCGACAAATTTTCT
ACCGATAAAGTATGTTAGTTTATTACCACTCAAATAACT

Coding sequence (CDS) from alignment at scaffold_348:257697..259335-

>TCONS_00060728 ID=TCONS_00060728|Name=TCONS_00060728|organism=Clytia hemisphaerica|type=CDS|length=2124bp|location=Sequence derived from alignment at scaffold_348:257697..259335- (Clytia hemisphaerica)
GTGATTGTATGTGCATGTATAATAATTTGATTTGCGGTAACCGTAGAGTC
GGGTTTTGCCAAGACCGTCGACACGGACGAAAAAGAGACTCGGAACTAAC
AAAGAAAGGTGATTGTATGTGCATGTATAATAATTTGATTTGCGGGAATC
GTAGAGTCGGGTTTTGCCAGGACCGTCGACACGGGCGAAAAAGAGACTCG
GAACTAACAAAGAAAGGTGATTGTATGTGCATGTATAATAATTTGATTTG
CGGGAATCGTAGAGTCGGGTTTTGCCAGGACCGTCGACACGGGCGAAAAA
GAGACTCGGAACTAACAAAGAAAGGTGATTGTATGTGCATGTATAATAAT
TTGATTTGCGGGAATCGTAGAGTCGGGTTTTGCCAACATCGCCGGCATGG
GCGAAAAAGAGACTCGGAACTAACAAAGAAAAGCGGTGGTTGTGTATGCA
TTTACAATAACCTGATCTGTGGAGGACAAATGCTTGGTTTTTGCCAAGAT
AGAAGAAATGGTCGAAGAACTGCTGACTCAGCAGGAAATGACATTGGGGA
GTTCAAGAGAAGTGATTGCATGTGTTTTCACAATGAGCTTCTCTGTGGTG
GACATCGTATTGGTTTCTGCCAAGAACACTGAATGATGATTTCACCAAGG
TTATTCATCTGTTTGGTTTTCTTGGCGACTGCATATTCTGCTTGTTTGAA
TGACCGAGAAGCAGATACAACCATTGGTGCAGGGAATGTCAAGAAAGCTT
TCAATGAAGACCAGGAGCAGATTGCCAGAGTTGTCAGTCAAACCAATGTG
GAAAATTCATTGATCAATAATTCTGGTAAACTGGTGAACAAAGACGTCAA
ATCTGCCAGCAAAGCAAATATCCAAAGCCCTGGAAAGAAAGAATCCACCA
ATATTGATGAAGAAGATTCTTCTGTACTTACCAAAGATGAATTGTCCAAG
AAAGGCGATTGTATGTGTATTTATAACAATTTGATCTGTGGGAATCACAG
AGTTGGGTTTTGCCAAGACCGTCGACACGGGCGAAAAAGAGACTCGGAAC
TAACCAAGAAAGGTGATTGTATGTGCATGTATAATAATTTGATTTGCGGT
AACCGTAGAGTCGGGTTTTGCCAAGACCGTCGACACGGACGAAAAAGAGA
CTCGGAACTAACAAAGAAAGGTGATTGTATGTGCATGTATAATAATTTGA
TTTGCGGGAATCGTAGAGTCGGGTTTTGCCAGGACCGTCGACACGGGCGA
AAAAGAGACTCGGAACTAACAAAGAAAGGTGATTGTATGTGCATGTATAA
TAATTTGATTTGCGGGAATCGTAGAGTCGGGTTTTGCCAGGACCGTCGAC
ACGGGCGAAAAAGAGACTCGGAACTAACAAAGAAAGGTGATTGTATGTGC
ATGTATAATAATTTGATTTGCGGGAATCGTAGAGTCGGGTTTTGCCAACA
TCGCCGGCATGGGCGAAAAAGAGACTCGGAACTAACAAAGAAAAGCGGTG
GTTGTGTATGCATTTACAATAACCTGATCTGTGGAGGACAAATGCTTGGT
TTTTGCCAAGATAGAAGAAATGGTCGAAGAACTGCTGACTCAGCAGGAAA
TGACATTGGGGAGTTCAAGAGAAGTGATTGCATGTGTTTTCACAATGAGC
TTCTCTGTGGTGGACATCGTATTGGTTTCTGCCAAGAACACTGAATGATG
ATTTCACCAAGGTTATTCATCTGTTTGGTTTTCTTGGCGACTGCATATTC
TGCTTGTTTGAATGACCGAGAAGCAGATACAACCATTGGTGCAGGGAATG
TCAAGAAAGCTTTCAATGAAGACCAGGAGCAGATTGCCAGAGTTGTCAGT
CAAACCAATGTGGAAAATTCATTGATCAATAATTCTGGTAAACTGGTGAA
CAAAGACGTCAAATCTGCCAGCAAAGCAAATATCCAAAGCCCTGGAAAGA
AAGAATCCACCAATATTGATGAAGAAGATTCTTCTGTACTTACCAAAGAT
GAATTGTCCAAGAAAGGCGATTGTATGTGTATTTATAACAATTTGATCTG
TGGGAATCACAGAGTTGGGTTTTGCCAAGACCGTCGACACGGGCGAAAAA
GAGACTCGGAACTAACCAAGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038155XLOC_038155Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060728-proteinTCONS_00060728-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060728-exon-scaffold_348-1575043694:258621..259335TCONS_00060728-exon-scaffold_348-1575043694:258621..259335Clytia hemisphaericaexon
TCONS_00060728-exon-scaffold_348-1575043694:257697..258512TCONS_00060728-exon-scaffold_348-1575043694:257697..258512Clytia hemisphaericaexon
TCONS_00060728-exon-scaffold_348-1510915933:258621..259335TCONS_00060728-exon-scaffold_348-1510915933:258621..259335Clytia hemisphaericaexon
TCONS_00060728-exon-scaffold_348-1510915933:257697..258512TCONS_00060728-exon-scaffold_348-1510915933:257697..258512Clytia hemisphaericaexon
TCONS_00060728-exon-scaffold_348-1491911889:258621..259335TCONS_00060728-exon-scaffold_348-1491911889:258621..259335Clytia hemisphaericaexon
TCONS_00060728-exon-scaffold_348-1491911889:257697..258512TCONS_00060728-exon-scaffold_348-1491911889:257697..258512Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_348supercontigscaffold_348:257697..259335 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.37571	0.314037	0.881181	1.07019	0.253333	0.343178	44.1976	37.4043	0.520134	5.0141	1.52258	0.285966	4.76543	2.7247	0.365726	0.0654134	0.725256	0.433629	12.2669	15.7918	1.94602	1.93637	2.83085	3.66466	1.58472	3.44581	8.05877	8.71836	0.0297863	0.0606951
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060728 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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