TCONS_00060671 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060671
Unique NameTCONS_00060671
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length864

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060671 ID=TCONS_00060671|Name=TCONS_00060671|organism=Clytia hemisphaerica|type=transcript|length=864bp
GTTGGAATCAAAGATCAGaagTCTTTTTCagcatgaaaataatataatta
tTTTGTATTGGATTCAATCAGCGACTATAACAATTTTGTTTCAATACTGA
ATAACTTAACTTGATGAAAATATGACAGAGGCCAAGGAAGATGCAGGCCA
ACAAGATGCTTATGATTATAAAAGATTACATAGTTATCCTCTTATAAGGT
ATTCGGATATGAGTGAGGAGATGCGAGTTGAAGCAATGGAGTTGTGTGTC
ACAGCTTGTGAAAAATTTGCAGCAAATAACGAGgCTGCAGCCAAAATGAT
TAAGGAGAGTCTGGACAAAAAGTTTGGTTCATCTTGGCATTGTGTGGTAG
GTGAAGGATATGGATTCGATATTACACACGAAGTGAAAAACCTCTTGTAT
TTATACTTTGGTGGATCCATTGCTGTCACTCTTTGGAAATGCTCctagaa
agaaattttaaaacttttgataaataTTCAAATCTTTTCAATTACTGACT
TGGATCTAGGGTGTTGAAATCTGTATTCATTGTGTAAAAATAGAATCAAA
ATGGATAGAAACTTTTTGGGTTTAAATCTTGTCCTAagaatcttttgaaa
ataatgtattATGGATCATATCCTATAGAAGCTCTCTTAATATTGACCAT
CAGAAAGTTGATGACGGTGGCCTAGAAGGTATAAGAGTCAATAAAAGTAA
TATTTATACTTTCACTTGTAAATTTagatttattatattttttgatttct
ctAATTATTAAATgtacataaaaaaacatgtttgaatgaaaaatgattaa
aattctAAATTGATATACAGTCATATTTCTTAACACCGGACAGTTCCAGT
TAAAGTCCGTTACC
Run BLAST on NCBI

protein sequence of TCONS_00060671-protein

>TCONS_00060671-protein ID=TCONS_00060671-protein|Name=TCONS_00060671-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
MTEAKEDAGQQDAYDYKRLHSYPLIRYSDMSEEMRVEAMELCVTACEKFA
ANNEAAAKMIKESLDKKFGSSWHCVVGEGYGFDITHEVKNLLYLYFGGSI
AVTLWKCS
Run BLAST on NCBI

transcript from alignment at scaffold_348:102036..106395-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060671 ID=TCONS_00060671|Name=TCONS_00060671|organism=Clytia hemisphaerica|type=transcript|length=4360bp|location=Sequence derived from alignment at scaffold_348:102036..106395- (Clytia hemisphaerica)
GTTGGAATCAAAGATCAGAAGGTTTGTTTTATTTCTAGTCCAGTAGAGTT
TTAGGCCTTTACCTTTGAAAATAGTAAATGGCTGAGTTGTGGTACAAAGT
TTCCTTAATATTAGCCCTTTTATTCTATTTATCTGTTTTAGTTCTTCTTA
TTTAGAAGAACTTCTAAACTAATAACTAAAGTTATAATAGAAAAGGCATG
AGGATTTCCTGTATTTTTTTTAAGTGTGGGGGTGGGGGGAGTGTGTATGA
GATCCAATTGATTGTCTAGTTTGTGTCATAGAAGCTTTAAATAATGGGTC
AAGCGACGAACGCGATGGTTTTTTGCATAAATAATTCCACACTTCAGTGT
TGATTGATACCGTCCAACTGCTACTGCTCCAACTTGGGACTATCTGACAC
AACATGGGACGGCCATTCCACCACCATTTCACTGAACGTCCAAAGTCATT
TGATTTGAGTATAATGAACCGCATATTAAAAAATAAACGATTTCTCTTTC
GCACCGAAGTAGGCTTTTAAATCGAAATATGAAAAAAATCTGTAGTGGAA
CACAAGAGCGAATGTGAGCGTTTGACGTCACTTGCGCGGCAAGTTACACA
CTTGATATTTGTTAATCTCATCAGGCGGTTAGGCGGCAGGCGTTCTCTAA
TTCTCCATTCGGCGTCCGGTCATTTTAAATGAAAACAAAAGTTAAAAAGG
GCGCGCTATATCAGCAGTGAAGTATGATTGATAAACTTGGTGGAATTAGT
AACCAGTGGGAAATTAGATTAGATTAGATATTACCTATTATACAAGTTTT
GTGTCTTTTTGAAAGAATTCTCCTTAAATTACGTGCTTTTCTCAATCGTT
GTGTTTGTGCTATGTGTCATGTAAACCAATTTGGCACCTGGAAAGAGCAC
ATTAGCACAAAATGATCTACTTCGCAGAGTTGATCTCAAACGAGTTGATT
CTTATGTTGTCAAACAACAAATGCGTTGGATTGGTCATGTCCTTAGAATG
CCTTGGGAAAGACTCCCTCGTAAGATGTTAACCTGTTGGGTTCACTCTAA
AAGACCTAGAGGATGCCCTAAATTCACTTTTGGAAGGTTGTTGAAGAAAT
CTATGCGGTTTGCTAATATAAACAGTCAAGAACAAGTGCAAGTTAGGATA
CCTTTGGCAATCTCTCCTACTTAGGAGAGTATCTTAAATTGGATGCAAAA
GAGTTTCTAAAAAAGCAATCAACATCCTAGTTTGGATACTAAAAACCAAA
AAACCTGTATTTTTCACCAACCAGAGACATCCGCGCTATCTTACCGCTTC
CAAGATGTTAATAATAAGCAAATGAGATTGTGTACTGAATTTTATCAAGT
TTGGCTGGCGGAATGCTAAACTATAGCCCAAAACCACTCAAATGTGCTAA
CTTTTTCGCACGAAAATCACCCAGGCTACCCAGGGATTTACGGCTACCAT
TTTAAAATTCGGGCCGTTCCGTAAAAAGAAAAACAAATCTTTAGCTTGTG
TTCGCAAAATTTTAGGCTCTGAACGGCAGATTATTAAGGATGTTAATTTT
CAAGGAACCCGCCAGAAAAATTACTTGAAATTTTGGTCAGTGGTGCAAAT
CTCGATGAAAAAAAGGTTTGCATAGTTTTCCAAATGCGGATCGAAGCAGT
AACCTAAAAAATTCAGGTCAAAGTGTTTGCTCTCCTATCTGGGATACCTA
AATCTCCAAATTAGGATACAACTCTCCTGGTTAGGAGAGATTGCCGAAGG
TATCCTACTAATATTACTATTACTACAAGTTTTGTTCAAATTGGCACGGT
AATATTGTCCTGAGTAGGCAAGCGTTAACGTTGCAAATCTTCAACAAAGA
GTCACTTATTTTGCTCCATTAATTACCTTATTTGGAGATGTTTTAGAGGT
GCAATTTCAAACCCTGGTGATCAGGCCATGTCAGTGGAAGTACCTTGATT
TTTGAAGCCTCTTCCTAGGAGAATGTGTATAAGAAATTTTATAACACTTC
ATGGCAGATATTTAAAAAAGACAATCAGAAAACGAAAGCTTCTTTTTTTT
TCATTTTCGCATCTATGGGGAAGAACGAAATTTTCAGAAGATACTTTATT
TGATATGAGGATTCCCATTTCCATAAAATCGCGACCCCCCATGGTTGCAA
AACGGTGGCTATGGGTAATTCCTTTGTTCTTTTGCTATATTCTTTTGTGA
CGTAAAGACGCTTCACAAATCGAAGTACTTTCACTAACTGCATGTATCTC
TGCTTTTAGGTACTAAATATCTCTTTTCAGAACTAAAAAAACTTGAATGA
CCTACTTTATCCGCTGAAAAAAGCCTACTTTAGTTTCCAGCATCATTTTT
GTATCTTTTGTTTGGACACATATTTTTTATTTATTTCGATGTTTGACATA
AATTTGAAAACCAATTAAAACACAGCCATGTTGGTTGGTTCGTGCAATAG
CCTTTGAAATGAGGGAAAGAATATGTGTAATCAAAGGCACCTCACCCATT
GTTTCTATTTCCATTTGAGTCACAGGAGATTCTAAGGCCCATTTCTGCAA
CTACAGATGTTTTCAATGAGAATCCTTTCATACCTTTGACTGACTATCCA
ATTCCCCTGACAAAGCGTGGGTTGACCCAGATTGAGAAAAAGGGTCCAAG
CATTGGTGTACTAATGGGTTGTTTTTTGTTTAGTCTTTTTCAGCATGAAA
ATAATATAATTATTTTGTATTGGATTCAATCAGCGACTATAACAATTTTG
TTTCAATACTGAATAACTTAACTTGATGAAAATATGACAGAGGCCAAGGA
AGATGCAGGCCAACAAGATGCTTATGATTATAAAAGATTACATAGTTATC
CTCTTATAAGGGTGAGTAAGGGAATTAGTTTTAGCATGAACTAATTCTAG
AGGAATTCACAGCACAAGGGTAATGATTAGCTGTTTGTCCAGAATTAATT
TTGCTTAGCATTCTAAAACAACCCCAACCACATTATTTATGCTTCGGGTT
TTATATTTCTTTACAGTATCCTTTTTAACGTCTATCGTTTGTCGTAGTTA
CTTTAAAACGAAATGTTTCGATGATTCTAGAATTTGAATCTTAAAACACC
TAGTTAGTTAAAAAGCAATTTGAATTCACAGAAGCATTAGTGTAAAAATT
GTTACTTGTTGGTAATTGATTTTGATGCAAAAAGTTTTTGGTAATAATAT
CTTAATTTAGTTAGAAATTTTAAGCATTGTTCTACAATGATTTCTCTTTT
AGTATTCGGATATGAGTGAGGAGATGCGAGTTGAAGCAATGGAGTTGTGT
GTCACAGCTTGTGAAAAATTTGCAGCAAATAACGAGGTAATCTTTCTCTT
GAAATTGAAAATCATCAAAATTACCTAATTCTCCATTCATTTTAAGCGAC
TGACCAATTTTCAATTCCTGCTAAAAAACATTAAAAGTTTTAACCTATTT
GAAGTTCAGATAAATAGTGCTCTGCGTAGCATGTACATCATAATTAAATT
TTAGCTGAAATTTTTACAAGTTGCAATCCCTATGAAAAAACTGTGAAATT
TATTACCTTTCTTTTGATATTGTAATTAATTAATGTGCAAGAGTAATCAA
CGCTTAGGATTTTGGGATTGAAGGTCGTACAAAGAATAAATTTGTGCAGA
TTTGTTACTATTTTTAGATTTGCCGCAAAGTGCTTTTGGTTTACAAAAGA
AAATGTTCATAGGGTTTTTACTCAGGTTCAGTGGAAAACATCACATTTAA
CAAAAGGGTATTTCAAAATTTTTGTTTAGGCTGCAGCCAAAATGATTAAG
GAGAGTCTGGACAAAAAGTTTGGTTCATCTTGGCATTGTGTGGTAGGTGA
AGGATATGGATTCGATATTACACACGAAGTGAAAAACCTCTTGTATTTAT
ACTTTGGTGGATCCATTGCTGTCACTCTTTGGAAATGCTCCTAGAAAGAA
ATTTTAAAACTTTTGATAAATATTCAAATCTTTTCAATTACTGACTTGGA
TCTAGGGTGTTGAAATCTGTATTCATTGTGTAAAAATAGAATCAAAATGG
ATAGAAACTTTTTGGGTTTAAATCTTGTCCTAAGAATCTTTTGAAAATAA
TGTATTATGGATCATATCCTATAGAAGCTCTCTTAATATTGACCATCAGA
AAGTTGATGACGGTGGCCTAGAAGGTATAAGAGTCAATAAAAGTAATATT
TATACTTTCACTTGTAAATTTAGATTTATTATATTTTTTGATTTCTCTAA
TTATTAAATGTACATAAAAAAACATGTTTGAATGAAAAATGATTAAAATT
CTAAATTGATATACAGTCATATTTCTTAACACCGGACAGTTCCAGTTAAA
GTCCGTTACC

Coding sequence (CDS) from alignment at scaffold_348:102036..106395-

>TCONS_00060671 ID=TCONS_00060671|Name=TCONS_00060671|organism=Clytia hemisphaerica|type=CDS|length=981bp|location=Sequence derived from alignment at scaffold_348:102036..106395- (Clytia hemisphaerica)
GCTGCAGCCAAAATGATTAAGGAGAGTCTGGACAAAAAGTTTGGTTCATC
TTGGCATTGTGTGGTAGGTGAAGGATATGGATTCGATATTACACACGAAG
TGAAAAACCTCTTGTATTTATACTTTGGTGGATCCATTGCTGTCACTCTT
TGGAAATGCTCCTAGTATTCGGATATGAGTGAGGAGATGCGAGTTGAAGC
AATGGAGTTGTGTGTCACAGCTTGTGAAAAATTTGCAGCAAATAACGAGA
TGACAGAGGCCAAGGAAGATGCAGGCCAACAAGATGCTTATGATTATAAA
AGATTACATAGTTATCCTCTTATAAGGGCTGCAGCCAAAATGATTAAGGA
GAGTCTGGACAAAAAGTTTGGTTCATCTTGGCATTGTGTGGTAGGTGAAG
GATATGGATTCGATATTACACACGAAGTGAAAAACCTCTTGTATTTATAC
TTTGGTGGATCCATTGCTGTCACTCTTTGGAAATGCTCCTAGTATTCGGA
TATGAGTGAGGAGATGCGAGTTGAAGCAATGGAGTTGTGTGTCACAGCTT
GTGAAAAATTTGCAGCAAATAACGAGATGACAGAGGCCAAGGAAGATGCA
GGCCAACAAGATGCTTATGATTATAAAAGATTACATAGTTATCCTCTTAT
AAGGGCTGCAGCCAAAATGATTAAGGAGAGTCTGGACAAAAAGTTTGGTT
CATCTTGGCATTGTGTGGTAGGTGAAGGATATGGATTCGATATTACACAC
GAAGTGAAAAACCTCTTGTATTTATACTTTGGTGGATCCATTGCTGTCAC
TCTTTGGAAATGCTCCTAGTATTCGGATATGAGTGAGGAGATGCGAGTTG
AAGCAATGGAGTTGTGTGTCACAGCTTGTGAAAAATTTGCAGCAAATAAC
GAGATGACAGAGGCCAAGGAAGATGCAGGCCAACAAGATGCTTATGATTA
TAAAAGATTACATAGTTATCCTCTTATAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038150XLOC_038150Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060671-proteinTCONS_00060671-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060671-exon-scaffold_348-1575043694:106375..106395TCONS_00060671-exon-scaffold_348-1575043694:106375..106395Clytia hemisphaericaexon
TCONS_00060671-exon-scaffold_348-1575043694:103535..103712TCONS_00060671-exon-scaffold_348-1575043694:103535..103712Clytia hemisphaericaexon
TCONS_00060671-exon-scaffold_348-1575043694:103060..103143TCONS_00060671-exon-scaffold_348-1575043694:103060..103143Clytia hemisphaericaexon
TCONS_00060671-exon-scaffold_348-1575043694:102036..102616TCONS_00060671-exon-scaffold_348-1575043694:102036..102616Clytia hemisphaericaexon
TCONS_00060671-exon-scaffold_348-1510915933:106375..106395TCONS_00060671-exon-scaffold_348-1510915933:106375..106395Clytia hemisphaericaexon
TCONS_00060671-exon-scaffold_348-1510915933:103535..103712TCONS_00060671-exon-scaffold_348-1510915933:103535..103712Clytia hemisphaericaexon
TCONS_00060671-exon-scaffold_348-1510915933:103060..103143TCONS_00060671-exon-scaffold_348-1510915933:103060..103143Clytia hemisphaericaexon
TCONS_00060671-exon-scaffold_348-1510915933:102036..102616TCONS_00060671-exon-scaffold_348-1510915933:102036..102616Clytia hemisphaericaexon
TCONS_00060671-exon-scaffold_348-1491911889:106375..106395TCONS_00060671-exon-scaffold_348-1491911889:106375..106395Clytia hemisphaericaexon
TCONS_00060671-exon-scaffold_348-1491911889:103535..103712TCONS_00060671-exon-scaffold_348-1491911889:103535..103712Clytia hemisphaericaexon
TCONS_00060671-exon-scaffold_348-1491911889:103060..103143TCONS_00060671-exon-scaffold_348-1491911889:103060..103143Clytia hemisphaericaexon
TCONS_00060671-exon-scaffold_348-1491911889:102036..102616TCONS_00060671-exon-scaffold_348-1491911889:102036..102616Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_348supercontigscaffold_348:102036..106395 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
27.3438	19.243	12.3973	10.0084	90.3251	54.9097	39.5462	32.6351	57.5582	48.8192	39.5505	45.6042	5.19297	3.51967	1.86743	1.94059	5.57431	6.75623	8.26458	8.01832	14.9147	12.8345	17.7638	17.4451	47.3347	37.2481	15.9624	19.5315	6.77646	7.95244
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001372Dynein_light_chain_typ-1/2
Vocabulary: Biological Process
TermDefinition
GO:0007017microtubule-based process
Vocabulary: Cellular Component
TermDefinition
GO:0030286dynein complex
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007017 microtubule-based process
cellular_component GO:0030286 dynein complex
Blast
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BLAST of TCONS_00060671 vs. Swiss-Prot (Human)
Match: DNAL4 (Dynein light chain 4, axonemal OS=Homo sapiens GN=DNAL4 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.816e-44
Identity = 77/103 (74.76%), Postives = 93/103 (90.29%), Query Frame = 2 
Query:  137 EDAGQQDAYDYKRLHSYPLIRYSDMSEEMRVEAMELCVTXXXXXXXXXXXXXXMIKESLDKKFGSSWHCVVGEGYGFDITHEVKNLLYLYFGGSIAVTLWKCS 445
            E  G++D  DYKRL ++PL+R+SDM EEMRVE MELCVTACEKF+ NNE+AAKMIKE++DKKFGSSWH V+GEG+GF+ITHEVKNLLYLYFGG++AV +WKCS
Sbjct:    3 ETEGKKDEADYKRLQTFPLVRHSDMPEEMRVETMELCVTACEKFSNNNESAAKMIKETMDKKFGSSWHVVIGEGFGFEITHEVKNLLYLYFGGTLAVCVWKCS 105
The following BLAST results are available for this feature:
BLAST of TCONS_00060671 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DNAL44.816e-4474.76Dynein light chain 4, axonemal OS=Homo sapiens GN=... [more]
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