TCONS_00060670 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060670
Unique NameTCONS_00060670
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1322

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060670 ID=TCONS_00060670|Name=TCONS_00060670|organism=Clytia hemisphaerica|type=transcript|length=1322bp
AAGACGCTTCACAAATCGAAGTACTTTCACTAACTGCATGTATCTCTGCT
TTTAGGTACTAAATATCTCTTTTCAGAACTAAAAAAACTTGAATGACCTA
CTTTATCCGCTGAAAAAAGCCTACTTTAGTTTCCAGCATCATTTTTGTAT
CTTTTGTTTGgacacatattttttatttatttcgatGTTTGACATAAATT
TGAAAACCAATTAAAACACAGCCATGTTGGTTGGTTCGTGCAATAGCCTT
TGAAATGAGGGAAAGAATATGTGTAATCAAAGGCACCTCACCCATTGTTT
CTATTTCCATTTGAGTCACAGGAGATTCTAAGGCCCATTTCTGCAACTAC
AGATGTTTTCAATGAGAATCCTTTCATACCTTTGACTGACTATCCAATTC
CCCTGACAAAGCGTGGGTTGACCCAGATTGAGAAAAAGGGTCCAAGCATT
GGTGTACTAATGGGTTGTTTTTTGTTTAGTCTTTTTCagcatgaaaataa
tataattatTTTGTATTGGATTCAATCAGCGACTATAACAATTTTGTTTC
AATACTGAATAACTTAACTTGATGAAAATATGACAGAGGCCAAGGAAGAT
GCAGGCCAACAAGATGCTTATGATTATAAAAGATTACATAGTTATCCTCT
TATAAGGTATTCGGATATGAGTGAGGAGATGCGAGTTGAAGCAATGGAGT
TGTGTGTCACAGCTTGTGAAAAATTTGCAGCAAATAACGAGgCTGCAGCC
AAAATGATTAAGGAGAGTCTGGACAAAAAGTTTGGTTCATCTTGGCATTG
TGTGGTAGGTGAAGGATATGGATTCGATATTACACACGAAGTGAAAAACC
TCTTGTATTTATACTTTGGTGGATCCATTGCTGTCACTCTTTGGAAATGC
TCctagaaagaaattttaaaacttttgataaataTTCAAATCTTTTCAAT
TACTGACTTGGATCTAGGGTGTTGAAATCTGTATTCATTGTGTAAAAATA
GAATCAAAATGGATAGAAACTTTTTGGGTTTAAATCTTGTCCTAagaatc
ttttgaaaataatgtattATGGATCATATCCTATAGAAGCTCTCTTAATA
TTGACCATCAGAAAGTTGATGACGGTGGCCTAGAAGGTATAAGAGTCAAT
AAAAGTAATATTTATACTTTCACTTGTAAATTTagatttattatattttt
tgatttctctAATTATTAAATgtacataaaaaaacatgtttgaatgaaaa
atgattaaaattctAAATTGATATACAGTCATATTTCTTAACACCGGACA
GTTCCAGTTAAAGTCCGTTACC
Run BLAST on NCBI

transcript from alignment at scaffold_348:102036..104191-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060670 ID=TCONS_00060670|Name=TCONS_00060670|organism=Clytia hemisphaerica|type=transcript|length=2156bp|location=Sequence derived from alignment at scaffold_348:102036..104191- (Clytia hemisphaerica)
AAGACGCTTCACAAATCGAAGTACTTTCACTAACTGCATGTATCTCTGCT
TTTAGGTACTAAATATCTCTTTTCAGAACTAAAAAAACTTGAATGACCTA
CTTTATCCGCTGAAAAAAGCCTACTTTAGTTTCCAGCATCATTTTTGTAT
CTTTTGTTTGGACACATATTTTTTATTTATTTCGATGTTTGACATAAATT
TGAAAACCAATTAAAACACAGCCATGTTGGTTGGTTCGTGCAATAGCCTT
TGAAATGAGGGAAAGAATATGTGTAATCAAAGGCACCTCACCCATTGTTT
CTATTTCCATTTGAGTCACAGGAGATTCTAAGGCCCATTTCTGCAACTAC
AGATGTTTTCAATGAGAATCCTTTCATACCTTTGACTGACTATCCAATTC
CCCTGACAAAGCGTGGGTTGACCCAGATTGAGAAAAAGGGTCCAAGCATT
GGTGTACTAATGGGTTGTTTTTTGTTTAGTCTTTTTCAGCATGAAAATAA
TATAATTATTTTGTATTGGATTCAATCAGCGACTATAACAATTTTGTTTC
AATACTGAATAACTTAACTTGATGAAAATATGACAGAGGCCAAGGAAGAT
GCAGGCCAACAAGATGCTTATGATTATAAAAGATTACATAGTTATCCTCT
TATAAGGGTGAGTAAGGGAATTAGTTTTAGCATGAACTAATTCTAGAGGA
ATTCACAGCACAAGGGTAATGATTAGCTGTTTGTCCAGAATTAATTTTGC
TTAGCATTCTAAAACAACCCCAACCACATTATTTATGCTTCGGGTTTTAT
ATTTCTTTACAGTATCCTTTTTAACGTCTATCGTTTGTCGTAGTTACTTT
AAAACGAAATGTTTCGATGATTCTAGAATTTGAATCTTAAAACACCTAGT
TAGTTAAAAAGCAATTTGAATTCACAGAAGCATTAGTGTAAAAATTGTTA
CTTGTTGGTAATTGATTTTGATGCAAAAAGTTTTTGGTAATAATATCTTA
ATTTAGTTAGAAATTTTAAGCATTGTTCTACAATGATTTCTCTTTTAGTA
TTCGGATATGAGTGAGGAGATGCGAGTTGAAGCAATGGAGTTGTGTGTCA
CAGCTTGTGAAAAATTTGCAGCAAATAACGAGGTAATCTTTCTCTTGAAA
TTGAAAATCATCAAAATTACCTAATTCTCCATTCATTTTAAGCGACTGAC
CAATTTTCAATTCCTGCTAAAAAACATTAAAAGTTTTAACCTATTTGAAG
TTCAGATAAATAGTGCTCTGCGTAGCATGTACATCATAATTAAATTTTAG
CTGAAATTTTTACAAGTTGCAATCCCTATGAAAAAACTGTGAAATTTATT
ACCTTTCTTTTGATATTGTAATTAATTAATGTGCAAGAGTAATCAACGCT
TAGGATTTTGGGATTGAAGGTCGTACAAAGAATAAATTTGTGCAGATTTG
TTACTATTTTTAGATTTGCCGCAAAGTGCTTTTGGTTTACAAAAGAAAAT
GTTCATAGGGTTTTTACTCAGGTTCAGTGGAAAACATCACATTTAACAAA
AGGGTATTTCAAAATTTTTGTTTAGGCTGCAGCCAAAATGATTAAGGAGA
GTCTGGACAAAAAGTTTGGTTCATCTTGGCATTGTGTGGTAGGTGAAGGA
TATGGATTCGATATTACACACGAAGTGAAAAACCTCTTGTATTTATACTT
TGGTGGATCCATTGCTGTCACTCTTTGGAAATGCTCCTAGAAAGAAATTT
TAAAACTTTTGATAAATATTCAAATCTTTTCAATTACTGACTTGGATCTA
GGGTGTTGAAATCTGTATTCATTGTGTAAAAATAGAATCAAAATGGATAG
AAACTTTTTGGGTTTAAATCTTGTCCTAAGAATCTTTTGAAAATAATGTA
TTATGGATCATATCCTATAGAAGCTCTCTTAATATTGACCATCAGAAAGT
TGATGACGGTGGCCTAGAAGGTATAAGAGTCAATAAAAGTAATATTTATA
CTTTCACTTGTAAATTTAGATTTATTATATTTTTTGATTTCTCTAATTAT
TAAATGTACATAAAAAAACATGTTTGAATGAAAAATGATTAAAATTCTAA
ATTGATATACAGTCATATTTCTTAACACCGGACAGTTCCAGTTAAAGTCC
GTTACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038150XLOC_038150Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060670-exon-scaffold_348-1575043694:103535..104191TCONS_00060670-exon-scaffold_348-1575043694:103535..104191Clytia hemisphaericaexon
TCONS_00060670-exon-scaffold_348-1575043694:103060..103143TCONS_00060670-exon-scaffold_348-1575043694:103060..103143Clytia hemisphaericaexon
TCONS_00060670-exon-scaffold_348-1575043694:102036..102616TCONS_00060670-exon-scaffold_348-1575043694:102036..102616Clytia hemisphaericaexon
TCONS_00060670-exon-scaffold_348-1510915933:103535..104191TCONS_00060670-exon-scaffold_348-1510915933:103535..104191Clytia hemisphaericaexon
TCONS_00060670-exon-scaffold_348-1510915933:103060..103143TCONS_00060670-exon-scaffold_348-1510915933:103060..103143Clytia hemisphaericaexon
TCONS_00060670-exon-scaffold_348-1510915933:102036..102616TCONS_00060670-exon-scaffold_348-1510915933:102036..102616Clytia hemisphaericaexon
TCONS_00060670-exon-scaffold_348-1491911889:103535..104191TCONS_00060670-exon-scaffold_348-1491911889:103535..104191Clytia hemisphaericaexon
TCONS_00060670-exon-scaffold_348-1491911889:103060..103143TCONS_00060670-exon-scaffold_348-1491911889:103060..103143Clytia hemisphaericaexon
TCONS_00060670-exon-scaffold_348-1491911889:102036..102616TCONS_00060670-exon-scaffold_348-1491911889:102036..102616Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_348supercontigscaffold_348:102036..104191 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.39614	2.97412	1.47441	0.642398	18.072	13.9505	6.9713	7.4588	2.65811	2.44559	1.23605	2.7553	0.187473	0.460515	0.168027	0.237085	0.548163	0.56136	0.862803	0.24532	1.14655	1.24095	2.11857	2.45973	10.0633	8.68436	2.88809	1.93987	0.646786	0.402515
Blast
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BLAST of TCONS_00060670 vs. Swiss-Prot (Human)
Match: DNAL4 (Dynein light chain 4, axonemal OS=Homo sapiens GN=DNAL4 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.141e-42
Identity = 77/103 (74.76%), Postives = 93/103 (90.29%), Query Frame = 1 
Query:  595 EDAGQQDAYDYKRLHSYPLIRYSDMSEEMRVEAMELCVTXXXXXXXXXXXXXXMIKESLDKKFGSSWHCVVGEGYGFDITHEVKNLLYLYFGGSIAVTLWKCS 903
            E  G++D  DYKRL ++PL+R+SDM EEMRVE MELCVTACEKF+ NNE+AAKMIKE++DKKFGSSWH V+GEG+GF+ITHEVKNLLYLYFGG++AV +WKCS
Sbjct:    3 ETEGKKDEADYKRLQTFPLVRHSDMPEEMRVETMELCVTACEKFSNNNESAAKMIKETMDKKFGSSWHVVIGEGFGFEITHEVKNLLYLYFGGTLAVCVWKCS 105
The following BLAST results are available for this feature:
BLAST of TCONS_00060670 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DNAL41.141e-4274.76Dynein light chain 4, axonemal OS=Homo sapiens GN=... [more]
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