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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060650 ID=TCONS_00060650|Name=TCONS_00060650|organism=Clytia hemisphaerica|type=transcript|length=758bp
CTAACACAACATGACGCTCTAAACACCACTCTTCAACTTCTTACCAACAC
TCACTCACAAAACAACTTTGAACATTCAGCAACACTTACAAGAACATTTT
ACACTGCTTATATTAACAACAACATCATCATGagtaaacaaaacaataaa
aacgttcCAAAGAACCATACTACTCCAAAAGCTTTTAATGGGATATCAAA
GAGCGCCCTGTTGGCTCCGCAAAGTGTCGTCACTATGCATTGGTGTACGC
CTAGCTCTGCTACCTTACCAATGGCGAGTGGGTTACATTTAGCCTCGGTT
AACTCCTCAACATGTTCGTGCACTAAAGAACAGATTAAACGTAACCGTAT
TTCAAGCGTTCCTGCATTACTTTCTGGTACTGCCCCACCTGAGTCGCAGA
TGACCGAATGGAGACGTAAAGGAGCCAGACCACGCTCTAGTGGATCAGTC
TCTAAAGACAGTGATTATAAAAGCCATGATAGTGGCACATTTAGTATGGC
TAACATGGTATCCGCCAGCGGAAGTGGAACCAAATCAAATGCCGTCAACC
CTGCCGCTATTACGCTCACCAAAGACCCTTTTGCGGAGTTGCGTGAAATC
TTGAAACCGTCATCACCGGAACTAATAAATGACATCATTAATGAAATCAA
AGGAGTGACAGCCGATTCTGAGAAGACTTCCGAGCCCAATAATCCATCTC
TTGCATCTGCATCTGTAACTGTATCGAAGAATGTAATACCACCATCATCA
ACCGTCAC Run BLAST on NCBI protein sequence of TCONS_00060650-protein >TCONS_00060650-protein ID=TCONS_00060650-protein|Name=TCONS_00060650-protein|organism=Clytia hemisphaerica|type=polypeptide|length=252bp
LTQHDALNTTLQLLTNTHSQNNFEHSATLTRTFYTAYINNNIIMSKQNNK
NVPKNHTTPKAFNGISKSALLAPQSVVTMHWCTPSSATLPMASGLHLASV
NSSTCSCTKEQIKRNRISSVPALLSGTAPPESQMTEWRRKGARPRSSGSV
SKDSDYKSHDSGTFSMANMVSASGSGTKSNAVNPAAITLTKDPFAELREI
LKPSSPELINDIINEIKGVTADSEKTSEPNNPSLASASVTVSKNVIPPSS
TV Run BLAST on NCBI transcript from alignment at scaffold_348:429760..433651+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060650 ID=TCONS_00060650|Name=TCONS_00060650|organism=Clytia hemisphaerica|type=transcript|length=3892bp|location=Sequence derived from alignment at scaffold_348:429760..433651+ (Clytia hemisphaerica)
CTAACACAACATGACGCTCTAAACACCACTCTTCAACTTCTTACCAACAC
TCACTCACAAAACAACTTTGAACATTCAGCAACACTTACAAGAACATTTT
ACACTGCTTATATTAACAACAACATCATCATGagtaaacaaaacaataaa
aacgttcCAAAGAACCATACTACTCCAAAAGCTTTTAATGGGATATCAAA
GAGCGCCCTGTTGGCTCCGCAAAGTGTCGTCACTATGCATTGGTGTACGC
CTAGCTCTGCTACCTTACCAATGGCGAGTGGGTTACATTTAGCCTCGGTT
AACTCCTCAACATGTTCGTGCACTAAAGAACAGATTAAACGTAACCGTAT
TTCAAGCGTTCCTGCATTACTTTCTGGTACTGCCCCACCTGAGTCGCAGA
TGACCGAATGGAGACGTAAAGGAGCCAGACCACGCTCTAGTGGATCAGTC
TCTAAAGACAGTGATTATAAAAGCCATGATAGTGGCACATTTAGTATGGC
TAACATGGTATCCGCCAGCGGAAGTGGAACCAAATCAAATGCCGTCAACC
CTGCCGCTATTACGCTCACCAAAGACCCTTTTGCGGAGTTGCGTGAAATC
TTGAAACCGTCATCACCGGAACTAATAAATGACATCATTAATGAAATCAA
AGgtataatataaattttaatttattttaatttcgaTTTAGAGTAATTGA
ATAAAACATATAGATGAAATCATAATGAAGCTTTCTAGCATTCAAACTGA
ATGTAATATGTTCTTAGATTTCGGATGGATTTTCCCTTTCAATATAGCAC
CTGTAGGCTGTTAGTACGCTGTGCCAGAATGTATCTCACCTGTGACACAG
TGTACAGCAATGAGAAAAGTGTAGGGGAAGCAGTTATTTATTGCCGGATG
CTGACTATATATTTACTGgaagttaaacttttttcaccttTAATTATTTT
ACGTATCTTTTATTGTGATCTTAGGGTAGTTTTAGTGACTCTGATTTGTC
CCGCGTTTAATAAGCCACTCCACCTTTCCAAAGAGTAAcgatcactgacc
tttatataaccctggacaaagcttctcaatcccagccaagcaaaatcttt
gatcggagttttttgaaaattggtaccctaatgtcggcactactcgatag
cggtgtaaatgcatcgagagagctaggtctactttctttcaaattctttt
gatgatgtagcggcgttagacgttaatttttagcattgcaatggcttctc
cttgggtaccaattctaaaaaaactccaatcaaagatggcagatattgct
tggtccagggttatataaaggtcagtggtaacGATCAAGGTTCAGAGGGA
CTTTAATAGTGAATGACTTatctcaggtgcctaataaacgccccccctgC
TCGTTAATCTTAATGTTTACttatttctgaaaatattttctagaATTTCT
AACCCTGTTAATTAATGATTAATAATTAATTAATCACCTGTTAATTAGGG
ACCCCGTTTATTATTAAGTTTTGAAGACCTCACTCCTCCGTTTGCTAAGC
GACCGAGAGTAACTAAATTGGAAGCTACACTCCAGGCGGATGGATATTCA
AAAAGCCCAAATTCTAAAGGTTAATGGAAGTTGACATAAGTAAGGTATGA
CTTAAGGggtctgaccatagtcaaaaaatttgttaagggatctgaagata
aaacttttgttttgggtTCCTTGACATTTTTAACTAAAAACAGCCTTTAC
AAATTGTTTGCAGATTCATTCTGTCTagagtaattaaaaatttaattaca
aaaatgacgttttgaacttaaaaaaacgttaataaaatgttatattaccc
tcttttacaaaaaatgctaAGTTTCAATGGGTAATCAACCTTTTTCTTcc
gaaatgtttttaaattatccgcaaagaattgaacgctattttaaaatttt
cgcaaaaattttctaaattgatgtattaaaaattatgactgtttttctac
aaaaaaattaggacaaaaaattggtcaaaaaacacttttttcaagatttt
gagacaaagaagctttaacaaaaattttccgaaaattcatTTTTAGTTTG
CTGGTTTATaatgcaaaaataattttcaaaatgttttttcttcgccgaaa
aaaaggccttcaaagttgaaatactcttcttcgcaaaaatcttcattttc
tttttcgtcaatttttttcattccgatttctaaattttcagattcaggaa
taatTGGCGTAACAGAAAATGTaaaacatgccatagttttattGGTTACA
TCAggccatagtcattataaaaaaaacccaGTCTGGTAATgcattgtttt
agctttttgttcaattttgttttgttacaaacaaaagacaagttgcgatt
tgcatactttttgatcacgttaccaaaatctcctcttgggattggtctat
tttctaatcacatgatcaaaaagtatgcaaaataaatcgatgtTAGCacg
taagctccatcttttaacaataaaaagagacaaaagccttccagaccagt
gtttttataatgactatgatcaGGCAAAAATCTATACTTTGTACATGGCa
agtatgaaaaattcactatcgGAAATAAGAGAAGGATTTTTACAAATCTA
TGGTCGTTGGAAAGATAGTCAGGAGTGGAATACATTATCGatatagaaaa
ttaaaaaaaaggaatCAACTTCAAGAAGCATtatcactgcaaaatattta
ttcGTTCATAAGCATACACGTTTTAAATTCAACTTTGACGTCAAAGCATG
TCCACCAAGCCTTGAATTTCGAACATCATTTCTGCCATAAGATAAAACTT
AAGACTTCTGCCTGGCCGActgtttaaccctattcatactaggttATTAG
AGGCGGTTCAAACTAGGGGGGTTGATTCTGTACCACTTTTGATGACTTCA
CTCGTCATGGTCTTTTAAAAagctacactttttttatataagagcaattt
tataagaacaacgaggctcaaaaatgtcaaaaaataagaacaatNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNtaaagtaaatagccaaaacttgtttttaccttagaaaaaataagaa
caaaataagaacaattcaaggctcaaagtgccaaaaaaataagaacagcc
gagcatcagcaaaaatttactggttcttataaaaaagaagtgTGTGTATT
TTAACAAacgctttagaaaaaagttccctgagtcgtctaaaatgcttatt
ttatcctaaatattcaataaattacggtttaaacgatatatttgacatga
aaaataaatttgtattgaaaatgtgtcaatttttgtgacaccttactgtc
agaaatgtcatcatgctcaaggtgtgaaaattgttaggtgacaatttttt
tgtattttgaagctaaataaaagttaagaatttacagaaaatttcatgcc
aaaagctctattatttcaggagccaTTAACAATAGTTTTATCCCCGAATA
GAAACAGCCCCCTCCCCTAGGACGAATAGGGTTTAAAAAGAACAGATTAA
TTTGAGACAAAGACGGGTTCTGTTCATTATTTTTAGGAGTGACAGCCGAT
TCTGAGAAGACTTCCGAGCCCAATAATCCATCTCTTGCATCTGCATCTGT
AACTGTATCGAAGAATGTAATACCACCATCATCAACCGTCAC Coding sequence (CDS) from alignment at scaffold_348:429760..433651+ >TCONS_00060650 ID=TCONS_00060650|Name=TCONS_00060650|organism=Clytia hemisphaerica|type=CDS|length=1512bp|location=Sequence derived from alignment at scaffold_348:429760..433651+ (Clytia hemisphaerica)
CTAACACAACATGACGCTCTAAACACCACTCTTCAACTTCTTACCAACAC
TCACTCACAAAACAACTTTGAACATTCAGCAACACTTACAAGAACATTTT
ACACTGCTTATATTAACAACAACATCATCATGagtaaacaaaacaataaa
aacgttcCAAAGAACCATACTACTCCAAAAGCTTTTAATGGGATATCAAA
GAGCGCCCTGTTGGCTCCGCAAAGTGTCGTCACTATGCATTGGTGTACGC
CTAGCTCTGCTACCTTACCAATGGCGAGTGGGTTACATTTAGCCTCGGTT
AACTCCTCAACATGTTCGTGCACTAAAGAACAGATTAAACGTAACCGTAT
TTCAAGCGTTCCTGCATTACTTTCTGGTACTGCCCCACCTGAGTCGCAGA
TGACCGAATGGAGACGTAAAGGAGCCAGACCACGCTCTAGTGGATCAGTC
TCTAAAGACAGTGATTATAAAAGCCATGATAGTGGCACATTTAGTATGGC
TAACATGGTATCCGCCAGCGGAAGTGGAACCAAATCAAATGCCGTCAACC
CTGCCGCTATTACGCTCACCAAAGACCCTTTTGCGGAGTTGCGTGAAATC
TTGAAACCGTCATCACCGGAACTAATAAATGACATCATTAATGAAATCAA
AGGAGTGACAGCCGATTCTGAGAAGACTTCCGAGCCCAATAATCCATCTC
TTGCATCTGCATCTGTAACTGTATCGAAGAATGTAATACCACCATCATCA
ACCGTCCTAACACAACATGACGCTCTAAACACCACTCTTCAACTTCTTAC
CAACACTCACTCACAAAACAACTTTGAACATTCAGCAACACTTACAAGAA
CATTTTACACTGCTTATATTAACAACAACATCATCATGagtaaacaaaac
aataaaaacgttcCAAAGAACCATACTACTCCAAAAGCTTTTAATGGGAT
ATCAAAGAGCGCCCTGTTGGCTCCGCAAAGTGTCGTCACTATGCATTGGT
GTACGCCTAGCTCTGCTACCTTACCAATGGCGAGTGGGTTACATTTAGCC
TCGGTTAACTCCTCAACATGTTCGTGCACTAAAGAACAGATTAAACGTAA
CCGTATTTCAAGCGTTCCTGCATTACTTTCTGGTACTGCCCCACCTGAGT
CGCAGATGACCGAATGGAGACGTAAAGGAGCCAGACCACGCTCTAGTGGA
TCAGTCTCTAAAGACAGTGATTATAAAAGCCATGATAGTGGCACATTTAG
TATGGCTAACATGGTATCCGCCAGCGGAAGTGGAACCAAATCAAATGCCG
TCAACCCTGCCGCTATTACGCTCACCAAAGACCCTTTTGCGGAGTTGCGT
GAAATCTTGAAACCGTCATCACCGGAACTAATAAATGACATCATTAATGA
AATCAAAGGAGTGACAGCCGATTCTGAGAAGACTTCCGAGCCCAATAATC
CATCTCTTGCATCTGCATCTGTAACTGTATCGAAGAATGTAATACCACCA
TCATCAACCGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060650-exon-scaffold_348-1491911889:429760..430411 | TCONS_00060650-exon-scaffold_348-1491911889:429760..430411 | Clytia hemisphaerica | exon |
| TCONS_00060650-exon-scaffold_348-1510915933:429760..430411 | TCONS_00060650-exon-scaffold_348-1510915933:429760..430411 | Clytia hemisphaerica | exon |
| TCONS_00060650-exon-scaffold_348-1575043694:429760..430411 | TCONS_00060650-exon-scaffold_348-1575043694:429760..430411 | Clytia hemisphaerica | exon |
| TCONS_00060650-exon-scaffold_348-1491911889:433546..433651 | TCONS_00060650-exon-scaffold_348-1491911889:433546..433651 | Clytia hemisphaerica | exon |
| TCONS_00060650-exon-scaffold_348-1510915933:433546..433651 | TCONS_00060650-exon-scaffold_348-1510915933:433546..433651 | Clytia hemisphaerica | exon |
| TCONS_00060650-exon-scaffold_348-1575043694:433546..433651 | TCONS_00060650-exon-scaffold_348-1575043694:433546..433651 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_348 | supercontig | scaffold_348:429760..433651 + |
Blast
The following BLAST results are available for this feature:
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