TCONS_00060637 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060637
Unique NameTCONS_00060637
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1606

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060637 ID=TCONS_00060637|Name=TCONS_00060637|organism=Clytia hemisphaerica|type=transcript|length=1606bp
TCCATATTTTGTCCTCTCTTTGCTGGAATTTCCAAAGTGAAAATCTTTCG
TCTGAGATTTGTTCGATTTCGAAACGTTTTGTTAGTGCTTTCTAATTAGA
AAGCTTTGCaagttttttaggttttttgaagataaaCTGAAGTCATGGCT
GATAAAGAATGCGAAGAGACAGCTATCAGCTTCAGCAACCCAATCTCGcT
ATACGTTCCGATCACCGATGGGAGTGCAATTCAACAACAAAAACTTATCC
CTCCAAATTCTTCCGTCTATGAACCTGCTTTCAATgcaTTCAATTTAGGC
GTGGAATTACCTCAGCATATACAACCAGCAAGCCATCACCAAAAGACTTT
ACAACAACATAACACACAACCCTATCATCAACAAGCGTGGCCTAACCAGA
CACTCCAGGCTCAACACCCTACATTCATAGAAGCTCCTTCCACAGCTAAC
AAAGTTCTCCCCATTTTCGAAGGTCAAAGTTTCCCGTTTCGATTATGGTA
TTTGGTCAATCATGAATTTTATGATGACGTAATCAAGTGGAGTGATGATG
GGAATTACGTCATTATTACGTCAGAGGGGCGATTTGAAGATAAGGTTTTG
ATCGAACCTCGAGATCGTATCTTTAAAACGACCAGCATGAAGTCTTTCAT
TCGCCAGTTGAACTTGTATGGTTTTCACAAAGTCCAGTTGGACAAGGATA
AAAACTTTTCGCATTTGAACGTCAAAGATAAAGCGAGTTGGCCAGAAACC
GTCTTTGCGCATTCATCTTTCAAAAGATCACGTCAAGAACTTTTAGAGCA
AGTGAGACGACGTTGTAAAGTCAAGCaacacaaacaaacaaaagcTCAAG
GTTTTCCCGTCGAATCTTACCCGTCAACGTCGTCCGTCAGTAACCCAAAG
AAACGGcgaaatatgtttttagaaTATTCAAACATGGTAGCATCTTCATC
TGCTTCAAATCAACAACAATCTTCAACCCAACTCCAAGAATCACAGTCTG
AAAATCTTCAACAAACGTACAATCCATCAGCAAGTGAAATTATGATGCAA
TACCCTAACCTTTTACCACAACCTGATCAATTCTTAACTGCTGGACGCGA
TGCCATGATGGCGACAACCTCCGCACAACGTCTCTCTCCCGCTTCTTCCG
TCAAACGAAACCTGCAAGCAATCGACTGGGGAAATATCTCAAACATAAAT
AACTCCTCGACAAGCACAACAAACGAAGATGTGTCACCGAGATTCGACTG
TCAGATCAACCAGTTACAATCTCCATCAACGAACCGACAAGTGTCTCTTC
GAGAGAAAACCACCCATCTCACAACACCGCCCTGTTTGCCGCCCGCTGCT
GAGCAATCCCTACTTGATTCAAGCATGTCAAAAGAGAATTTGAACCCTTT
AGCTGATTTCTGTGCTTCTTTGTTTTACCCAAACAAAGAAAACGAGCTGG
GCTGtgatgactgaaaatgacttttttgaacttttggaaaaCTTAGCTTC
CATTTGTAACTATTTACTTAgaaatttagaatttaaaattttcaccccTG
TTATTCTCCACACTTTCGACCCTTTCTTATCCTAAACTAGTAGCGTTTTT
TCGGAT
Run BLAST on NCBI

protein sequence of TCONS_00060637-protein

>TCONS_00060637-protein ID=TCONS_00060637-protein|Name=TCONS_00060637-protein|organism=Clytia hemisphaerica|type=polypeptide|length=439bp
MADKECEETAISFSNPISLYVPITDGSAIQQQKLIPPNSSVYEPAFNAFN
LGVELPQHIQPASHHQKTLQQHNTQPYHQQAWPNQTLQAQHPTFIEAPST
ANKVLPIFEGQSFPFRLWYLVNHEFYDDVIKWSDDGNYVIITSEGRFEDK
VLIEPRDRIFKTTSMKSFIRQLNLYGFHKVQLDKDKNFSHLNVKDKASWP
ETVFAHSSFKRSRQELLEQVRRRCKVKQHKQTKAQGFPVESYPSTSSVSN
PKKRRNMFLEYSNMVASSSASNQQQSSTQLQESQSENLQQTYNPSASEIM
MQYPNLLPQPDQFLTAGRDAMMATTSAQRLSPASSVKRNLQAIDWGNISN
INNSSTSTTNEDVSPRFDCQINQLQSPSTNRQVSLREKTTHLTTPPCLPP
AAEQSLLDSSMSKENLNPLADFCASLFYPNKENELGCDD
Run BLAST on NCBI

transcript from alignment at scaffold_348:170398..178330+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060637 ID=TCONS_00060637|Name=TCONS_00060637|organism=Clytia hemisphaerica|type=transcript|length=7933bp|location=Sequence derived from alignment at scaffold_348:170398..178330+ (Clytia hemisphaerica)
TCCATATTTTGTCCTCTCTTTGCTGGAATTTCCAAAGTGAAAATCTTTCG
TCTGAGATTTGTTCGATTTCGAAACGTTTTGTTAGTGCTTTCTAATTAGA
AAGCTTTGCaagttttttaggttttttgaagataaaCTGAAGGTACagca
ttatttattttttatcgtgattttattcattttcccaTTTTGAAAGAAGG
CCAGCTAGTGTTTACTTTTGAATATTCGAATGATTCAGATCGAATTTTTT
GTCTTTCGAATGTCGAACCCCAATCGAATGCTTGAATGTTCGAAAAAAAC
TACATAAAAGCCAAGTCTCCTCTGGTCTGAAGCCCAATTTGATTCTGTTN
CGAATGCTTGAATGTTCGAAAAAATCTACATAAAAGCCAAGTCTCCTCTG
GTCTGAAGCCCAATTTGATTCTGTTGTGTTTGGTAGAGGTTGAAGCCAAA
AATCTTTCCAGCTAAGACATAAGATGGCTCCTTTTCTGTTTCTTTTTCGC
ACAGAGTCATGGCTGATAAAGAATGCGAAGAGACAGCTATCAGCTTCAGC
AACCCAATCTCGGTAAGTCTAgactttttagctgtttttgTCCAAAAGGG
AAAAGAAATAAACTTGTAAACTTATTTATTGcacacaaagaaaaaatatt
gcgTGACCTTTCTCCCTTTGTCTGACTGGAGAAAGGTCCTACCCAGAAGG
AAAGACTTCGGCCNTGTCTCGAAGtgtactatcgattagaggggtcattt
atagggtttcctaggctagatcatgagatatttgagtttgaaattttgct
gactctgcgtttttcaacgtttttggcccttttctgctgtagtttcttgt
catttttttccaaactgaggctgggcatgttcttacgatgttcttaattt
ttcgacgaatttcagcctcaatgttcttNAAATAAAAAATGGAATTCTAT
ATCTATAAATGTCAAAACAAAGGGGAAATAAAGAACTAATTCCCTAGTGA
ATAGAAATAGACACGAACAAACAAAAGAGAAATCTACAAATCTATTTCAT
NtgttaaaaaaaaaaatattcttaacaccTTACCTTTATTAGATTCCCCA
ACCATTAAAGCCAAAccagaacattcaaaatttttgaaacctgcagatgt
tcttaattttttgaatttcaagcctaaaaatattcttaatttcagCATTA
TGTGAGTGTTTTTGTGCGGTTTCTTTtgaaattggatgttttagagtccg
ttcaagcctgaaaatgttcgcaagggctctgaccataatgaatttttaat
attgcCCTGTACAAAATGTagatttctgcctgatgtaaccaataaaacta
tggcatgttatacatacTGTTAGtccaactattcctgaatctgaaaattt
aaaaattacattaaaaaattttgatgaagaagaaaatgaagaattttgcc
Ntctgaaaatttaaaaatcacattaaaaaattttgatgaagaagaaaatg
aagaattttgccAAGAAGGGTATTTCTTTCAACTTTGAGaaccttatttt
cggcgaagaaaaaccactttaaaatttatataaagttctttcttataaaa
aaaacctgtaTCAAGCCTTTCTTGTAAAGTGAGACACCCCCCTTATGGAA
GGGGGAGGGGTTCACATTATGAATTAATAGTACTTTCGGGtaataattta
caaaaattcttgtCTCTACCCACTGGTCATGGGCAGTGGATGGTTAAATA
AGAAGAATATTCGAAAATATTCAATTTGAGGCTGCCGAATCCAAATCTGA
TACACGAAGCCCGAAGTCTAAAAATTTTGAGGCAAAGGCTTGGAGTTTTT
GTGGTGAAAAAATGAGGGGAATTTCCCAAgaatcttcaaaatattttagc
tTCAAACGCTTACTAATCGATAAAGAATTTTTTGATACGTAAAATTTAAA
TACCTTTTTGTAAGTTGACTTTTAGTTGATTTTAGCCGCTGCCTTTTAAT
CTCttgtcatatttttcttgtCAGCTTCTAAATCCGACTTCATGAAAGCA
TGTGTTGTGTTTTGATAACTGCGGAGTACTGGGTCGAAATTTTTCTTCCC
GATCGTTAAAAATGAAATCGATTATAGCCTAGCagtgttttgattggtca
agCATGAAATCGACATCAAAGCattcgaaatttttttacacttttcaaaa
catttagcTTGTACTGCTGTGCTGTTGATAGCTCTTTTGTGttggttttt
tgttttgaaagttgtgTTTTGTTAGTTTGGGATTTCTGGAAAGTCTCTAT
GCATCGTTCGAATTGTAAACGTTCTCGCTTCTCTGATTCCTGGAGATGGG
GTCACGTGACAAGATCACTTGATAATGCATTCAGATTGAGACTTTATGGT
TATGCTGGCATTAGAATTTCAAGGGTTGGAGTCTTAGATGATGTAATTAT
AACTTTCTACTTTTCTACAAATTTAATCTCGCAGAAAATTTACGTTGATT
ACAGTACGTTGATAAATATCAACTTCACAGAAAACAAATGTGTCAACAGG
TTTTATCCAACCAGATCCAACGAGGGGACCTTAATCTGAACAAATTACGA
CATTATATACCTTTCATttagatttgaattttcaaCCTGTCTTACTAGGG
GGATTATGAAATTCATTGatcgttcttaaattgttcttaggttttgacta
aaatttatccttattttttctcatttctagcTATACGTTCCGATCACCGA
TGGGAGTGCAATTCAACAACAAAAACTTATCCCTCCAAATTCTTCCGTCT
ATGAACCTGCTTTCAATgcagtaagttttttttaaatgcctttcaaaatt
cttaaaaatttagtaATACTTATGGggaaaagaaaatgttaagtggATGA
TTTTAAGACTTAAGAAAATCTCTCAAAAATCCCGAGAGAGGATTTTTTCT
AATGGACCAAAAATCCtaaatttatactttttcctGGACTTTAAACTTCG
TTGATTTGTCAAATCTTTCTTTGAGCAAAATATTCGGCAGAATGAGTCTA
TTTTGCTCATTTTTGGCCATTTCCAGTGTACTTTATTTAGGCCAATCTTT
AGTAACAGATTTTTACCCATTCCACAAGCCTATAAACGAAGAAAatcagt
tttcattttctttagagAGGCCCTTCAAAAGACCTATGATTCACGCGATG
GTGCAATTTTCTTTTCcaaattcacacattcacgAATATTTTTTCCTAAA
TTCATGCAATTTCTGTTCACGAAAAGTTTTCCAAATACCCCATTCACACA
TTTGCGCATTCATtcaaaccattgagtttaaagcccgaagggctagagtt
caatctctaacctttctcaggcaacaaaaagtgaagccttaaaaaatgcg
ccgacTTTTTGACAACAGATTgtatctagcaattcctttgtttacgattg
atattttttttcgaaatttagcggcaaattttagtttcaatctgtcattt
gtgtaaaaaccaggcgagccgctcaaggccgtgcaactttggtaggattt
gttggcttcaaatcctaccaaagagattgacttctagcccttcgggctta
tacttcattgattcAAACTCCAGAGCGCCCCCATAGAGGCTTCTAGCCAT
CTTGATTGAGGATAAATCCTAAACGCCCATAATTATTCCGTTCAGGGTTA
CTTCACGTTACTTCATTTGTTTGAATTTcatggttttttttatttttgaa
cttttaaagcTAACTCATAGATcattgacagttacatcaaaatgccaaaa
acattttgttcaaccaccttcacttcaagataggccaccatagaatgaac
ttccttttataggatgaaccatattcatgtggctttcagccttgcactcc
atcgcagagcctaatcaattttaatgacttttttgactaatgaccaagtt
aaatttttctaatttttttatatttgagtattaaaaaggcatgcattcaa
ataataaaggtttaaaatttttctctgggctagttaataaaatatctcaa
ataggctctgtgatggagtgcaaggctgaaatcttgaagtgaaggtggtt
gaacaaaatgtttttggcatattgatgtaactgattgaTGTGTATGCCTG
TTGCAACAACGTCAGGGTTTTAATCAAACAAAACGATTGGGAAACATTGA
GAAATTTGATCGTCACAGATCGTCAAATTAATCGATttaatgaaaaaagt
tttcaacgctaaattgaattaaaagaagagataatcagatggtttgtgat
atttggcatgtgtaatctttttattttcctgagcaaaatctcaaaatatt
ttacctaaatattttctaaagtctattaattacaagtttttgacttttag
taaaaaatttcaacgtaagaaccgtgtgagaaccctttttcagaaatttc
aaattttgaaatctcgACTGTGGAAAATAATTACCCAAACATACTTGGAG
GTTTTACTCAAGCTCACACATAAGCTTTCTTcaggccaaatatctcaaac
catctgattatccctttataGCGCAGGCAATATGGGGCACTTGCAGGTGA
ACAAGGTCTTCAACTGTTCCTACACATCTATATTTTGAGAATCACGATGG
TTTTCAGGCTAACTCTCTATCACGAACAATTCAGGGGTGTCTTGAGAGCA
CCTGGGGTCGTTTTTTCTAGCAGCTTTGCCTAGGGTAGGGCACTTGTTTC
AtccaaactaatttttgaaatcatGTTCAAATTTCAGTTCAATTTAGGCG
TGGAATTACCTCAGCATATACAACCAGCAAGCCATCACCAAAAGACTTTA
CAACAACATAACACACAACCCTATCATCAACAAGCGTGGCCTAACCAGAC
ACTCCAGGCTCAACACCCTACATTCATAGAAGCTCCTTCCACAGCTAACA
AAGTTCTCCCCATTTTCGAAGGTCAAAGTTTCCCGTTTCGATTATGGTAT
TTGGTCAATCATGAATTTTATGATGACGTAATCAAGTGGAGTGATGATGG
GAATTACGTCATTATTACGTCAGAGGGGCGATTTGAAGATAAGGTTTTGA
TCGAACCTCGAGATCGTATCTTTAAAACGACCAGCATGAAGTCTTTCATT
CGCCAGTTGAACTTGTATGGTTTTCACAAAGTCCAGTTGGACAAGGATAA
AAACTTTTCGCATTTGAACGTCAAAGATAAAGCGAGTTGGCCAGAAACCG
TCTTTGCGCATTCATCTTTCAAAAGATCACGTCAAGAACTTTTAGGTGAG
TAAAGCTCTATTTTCTCTAATTTAGGTGTCTAATGATAGCTCCcaagttt
attaatttttttgattttgcccTAACTTGAAAGCTCTTTTGGTATATGAG
AACGTCACTCACTTATCGTCAGGATATCgtagcgaaacggaaccgtagag
tgtgaacatggtcttagattTTAGTACTGTCTCACCTCCTTAGTTAGTCT
CCCAACAACTTTTATTACATTCCTGTAGAGCAAGTGAGACGACGTTGTAA
AGTCAAGCaacacaaacaaacaaaagcTCAAGGTTTTCCCGTCGAATCTT
ACCCGTCAACGTCGTCCGTCAGTAACCCAAAGAAACGGcgaaatatgttt
ttagaaTATTCAAACATGGTAGCATCTTCATCTGCTTCAAATCAACAACA
ATCTTCAACCCAACTCCAAGAATCACAGTCTGAAAATCTTCAACAAACGT
AAGTCTCCTTTTGATCGTCTTAAGCGGGGGGAGGGGGAGACCTTAACGTG
CCGCCGTCAAATAtcatgaatgtttggtaaatttgtgaccctgtcagaac
aaaaaatcgaaaagaagACGAAAactttccaccctgaaaataaatagaca
aaaagaaaaagaaaagaattaacCAAAAATCGACCGTGTCGGATATTCAA
TTAATAAATTTTCCAGATTAGCCAGACCCTAAACAATAGACCCAGACCAG
CAGTACGCCCCATACATAATTTTGCCTAAGTTAACAGTATCATTAGTGTT
ATCTTGGAGATCTAGACGAGCTCTTGTCTTCAATCAACAAATACTTGTTA
CtcactttaaaactttaaagaaTGAAGGAAATGCTTGGTATTTCTGCTGA
GAGAGTTGCTGAAGATGTTGTACAATTTTTGCGAAGTTGTAAAATTTATA
TGCTAAACGCCTACCActcaaaattattatttttttttcatataaaatta
atattttaattttaaccTTCATTTTTACCCCTCTCATTTGAGCTTacaat
tttcactttttgtttGCAGGTACAATCCATCAGCAAGTGAAATTATGATG
CAATACCCTAACCTTTTACCACAACCTGATCAATTCTTAACTGCTGGACG
CGATGGTAAGAATGTTGTGAAACGacttttttttaacattcaAACTAGGT
GCAAAACAGTTAACATGGCTTTGTCGTTATGGGACAACACTCAACctttc
gaaatttttcaaaaacaattaaattttcttaattaaagaaaatttacaGC
AGATGTCTTTAATGTTTGCTCCATTCATAAAGAAAATTCGTTTAAAAGTA
TTAAGGCCtattaatttttacaaaaaattgaatttcatgTTGCaaaaaat
tagcattttttgaGACAAATGGTCTTGAGAAGACAATATTTGCCCTGGGA
AGACAAAAATTGGTCTCTATGTCAAAATGTTCCAGAAATTTTTAGTACAT
GTATACTAAAATAACAACTCTTTAAAACTCTTTTGGTATACACTAGACGG
CTCCCGTCGTTgcaaacgccggtttagcttgcgcatcgaaagcccttagg
atgataaagatggtattattattattgatgCTCTCTTTAATTCAAATAAT
CTTTAAGGGTAATTTGAGTTAGTTAGCACATTGAGAAGTATACATTTATG
ACTGAGATTTCAGTACCGATCCCCCTCCCTGAGTTTTAAAAGCTTTAGAC
TTTCATCGAGAGAacacaaaactttcaaatcagGTGAATCCTAAAAACAG
GTGTCAGGGTAATCTTTTGATGCACCCTAATCTATAATCCTTTCTTAAGG
GCAAATGCACCATTAAATCTGCAAAGTCAAAGAGAGGTTAATTAGGGATC
GTCAAACTTGGCTTTTTCATTGTAATATTCAAACACCTTTCTTTACCCTT
GAATACTTCTGGGGTCAGAAATTTTCGAAGTGTTGTGAAATTTTCGACAT
TTATTCTCGCGAATTTgacgaaaaacatttttaattttcgcctTTCAGCC
ATGATGGCGACAACCTCCGCACAACGTCTCTCTCCCGCTTCTTCCGTCAA
ACGAAACCTGCAAGCAATCGACTGGGGAAATATCTCAAACATAAATAACT
CCTCAACAAGCACAACAAACGAAGATGTGTCACCGAGATTCGACTGTCAG
ATCAACCAGTTACAATCTCCATCAACGAACCGACAAGTGTCTCTTCGAGA
GAAAACCACCCATCTCNGAACATAAATAACTCCTCGACAAGCACAACAAA
CGAAGATGTGTCACCGAGATTCGACTGTCAGATCAACCAGTTACAATCTC
CATCAACGAACCGACAAGTGTCTCTTCGAGAGAAAACCACCCATCTCACA
ACACCGCCCTGTTTGCCGCCCGCTGCTGAGCAATCCCTACTTGATTCAAG
CATGTCAAAAGAGAATTTGAACCCTTTAGCTGATTTCTGTGCTTCTTTGT
TTTACCCAAACAAAGAAAACGAGCTGGGCTGtgatgactgaaaatgactt
ttttgaacttttggaaaaCTTAGCTTCCATTTGTAACTATTTACTTAgaa
atttagaatttaaaattttcaccccTGTTATTCTCCACACTTTCGACCCT
TTCTTATCCTAAACTAGTAGCGTTTTTTCGGAT

Coding sequence (CDS) from alignment at scaffold_348:170398..178330+

>TCONS_00060637 ID=TCONS_00060637|Name=TCONS_00060637|organism=Clytia hemisphaerica|type=CDS|length=9240bp|location=Sequence derived from alignment at scaffold_348:170398..178330+ (Clytia hemisphaerica)
ATGGCTGATAAAGAATGCGAAGAGACAGCTATCAGCTTCAGCAACCCAAT
CTCGcTATACGTTCCGATCACCGATGGGAGTGCAATTCAACAACAAAAAC
TTATCCCTCCAAATTCTTCCGTCTATGAACCTGCTTTCAATgcaTTCAAT
TTAGGCGTGGAATTACCTCAGCATATACAACCAGCAAGCCATCACCAAAA
GACTTTACAACAACATAACACACAACCCTATCATCAACAAGCGTGGCCTA
ACCAGACACTCCAGGCTCAACACCCTACATTCATAGAAGCTCCTTCCACA
GCTAACAAAGTTCTCCCCATTTTCGAAGGTCAAAGTTTCCCGTTTCGATT
ATGGTATTTGGTCAATCATGAATTTTATGATGACGTAATCAAGTGGAGTG
ATGATGGGAATTACGTCATTATTACGTCAGAGGGGCGATTTGAAGATAAG
GTTTTGATCGAACCTCGAGATCGTATCTTTAAAACGACCAGCATGAAGTC
TTTCATTCGCCAGTTGAACTTGTATGGTTTTCACAAAGTCCAGTTGGACA
AGGATAAAAACTTTTCGCATTTGAACGTCAAAGATAAAGCGAGTTGGCCA
GAAACCGTCTTTGCGCATTCATCTTTCAAAAGATCACGTCAAGAACTTTT
AGAGCAAGTGAGACGACGTTGTAAAGTCAAGCaacacaaacaaacaaaag
cTCAAGGTTTTCCCGTCGAATCTTACCCGTCAACGTCGTCCGTCAGTAAC
CCAAAGAAACGGcgaaatatgtttttagaaTATTCAAACATGGTAGCATC
TTCATCTGCTTCAAATCAACAACAATCTTCAACCCAACTCCAAGAATCAC
AGTCTGAAAATCTTCAACAAACGTACAATCCATCAGCAAGTGAAATTATG
ATGCAATACCCTAACCTTTTACCACAACCTGATCAATTCTTAACTGCTGG
ACGCGATGCCATGATGGCGACAACCTCCGCACAACGTCTCTCTCCCGCTT
CTTCCGTCAAACGAAACCTGCAAGCAATCGACTGGGGAAATATCTCAAAC
ATAAATAACTCCTCGACAAGCACAACAAACGAAGATGTGTCACCGAGATT
CGACTGTCAGATCAACCAGTTACAATCTCCATCAACGAACCGACAAGTGT
CTCTTCGAGAGAAAACCACCCATCTCACAACACCGCCCTGTTTGCCGCCC
GCTGCTGAGCAATCCCTACTTGATTCAAGCATGTCAAAAGAGAATTTGAA
CCCTTTAGCTGATTTCTGTGCTTCTTTGTTTTACCCAAACAAAGAAAACG
AGCTGGGCTGtgatgactgaATGGCTGATAAAGAATGCGAAGAGACAGCT
ATCAGCTTCAGCAACCCAATCTCGcTATACGTTCCGATCACCGATGGGAG
TGCAATTCAACAACAAAAACTTATCCCTCCAAATTCTTCCGTCTATGAAC
CTGCTTTCAATgcaTTCAATTTAGGCGTGGAATTACCTCAGCATATACAA
CCAGCAAGCCATCACCAAAAGACTTTACAACAACATAACACACAACCCTA
TCATCAACAAGCGTGGCCTAACCAGACACTCCAGGCTCAACACCCTACAT
TCATAGAAGCTCCTTCCACAGCTAACAAAGTTCTCCCCATTTTCGAAGGT
CAAAGTTTCCCGTTTCGATTATGGTATTTGGTCAATCATGAATTTTATGA
TGACGTAATCAAGTGGAGTGATGATGGGAATTACGTCATTATTACGTCAG
AGGGGCGATTTGAAGATAAGGTTTTGATCGAACCTCGAGATCGTATCTTT
AAAACGACCAGCATGAAGTCTTTCATTCGCCAGTTGAACTTGTATGGTTT
TCACAAAGTCCAGTTGGACAAGGATAAAAACTTTTCGCATTTGAACGTCA
AAGATAAAGCGAGTTGGCCAGAAACCGTCTTTGCGCATTCATCTTTCAAA
AGATCACGTCAAGAACTTTTAGAGCAAGTGAGACGACGTTGTAAAGTCAA
GCaacacaaacaaacaaaagcTCAAGGTTTTCCCGTCGAATCTTACCCGT
CAACGTCGTCCGTCAGTAACCCAAAGAAACGGcgaaatatgtttttagaa
TATTCAAACATGGTAGCATCTTCATCTGCTTCAAATCAACAACAATCTTC
AACCCAACTCCAAGAATCACAGTCTGAAAATCTTCAACAAACGTACAATC
CATCAGCAAGTGAAATTATGATGCAATACCCTAACCTTTTACCACAACCT
GATCAATTCTTAACTGCTGGACGCGATGCCATGATGGCGACAACCTCCGC
ACAACGTCTCTCTCCCGCTTCTTCCGTCAAACGAAACCTGCAAGCAATCG
ACTGGGGAAATATCTCAAACATAAATAACTCCTCGACAAGCACAACAAAC
GAAGATGTGTCACCGAGATTCGACTGTCAGATCAACCAGTTACAATCTCC
ATCAACGAACCGACAAGTGTCTCTTCGAGAGAAAACCACCCATCTCACAA
CACCGCCCTGTTTGCCGCCCGCTGCTGAGCAATCCCTACTTGATTCAAGC
ATGTCAAAAGAGAATTTGAACCCTTTAGCTGATTTCTGTGCTTCTTTGTT
TTACCCAAACAAAGAAAACGAGCTGGGCTGtgatgactgaATGGCTGATA
AAGAATGCGAAGAGACAGCTATCAGCTTCAGCAACCCAATCTCGcTATAC
GTTCCGATCACCGATGGGAGTGCAATTCAACAACAAAAACTTATCCCTCC
AAATTCTTCCGTCTATGAACCTGCTTTCAATgcaTTCAATTTAGGCGTGG
AATTACCTCAGCATATACAACCAGCAAGCCATCACCAAAAGACTTTACAA
CAACATAACACACAACCCTATCATCAACAAGCGTGGCCTAACCAGACACT
CCAGGCTCAACACCCTACATTCATAGAAGCTCCTTCCACAGCTAACAAAG
TTCTCCCCATTTTCGAAGGTCAAAGTTTCCCGTTTCGATTATGGTATTTG
GTCAATCATGAATTTTATGATGACGTAATCAAGTGGAGTGATGATGGGAA
TTACGTCATTATTACGTCAGAGGGGCGATTTGAAGATAAGGTTTTGATCG
AACCTCGAGATCGTATCTTTAAAACGACCAGCATGAAGTCTTTCATTCGC
CAGTTGAACTTGTATGGTTTTCACAAAGTCCAGTTGGACAAGGATAAAAA
CTTTTCGCATTTGAACGTCAAAGATAAAGCGAGTTGGCCAGAAACCGTCT
TTGCGCATTCATCTTTCAAAAGATCACGTCAAGAACTTTTAGAGCAAGTG
AGACGACGTTGTAAAGTCAAGCaacacaaacaaacaaaagcTCAAGGTTT
TCCCGTCGAATCTTACCCGTCAACGTCGTCCGTCAGTAACCCAAAGAAAC
GGcgaaatatgtttttagaaTATTCAAACATGGTAGCATCTTCATCTGCT
TCAAATCAACAACAATCTTCAACCCAACTCCAAGAATCACAGTCTGAAAA
TCTTCAACAAACGTACAATCCATCAGCAAGTGAAATTATGATGCAATACC
CTAACCTTTTACCACAACCTGATCAATTCTTAACTGCTGGACGCGATGCC
ATGATGGCGACAACCTCCGCACAACGTCTCTCTCCCGCTTCTTCCGTCAA
ACGAAACCTGCAAGCAATCGACTGGGGAAATATCTCAAACATAAATAACT
CCTCGACAAGCACAACAAACGAAGATGTGTCACCGAGATTCGACTGTCAG
ATCAACCAGTTACAATCTCCATCAACGAACCGACAAGTGTCTCTTCGAGA
GAAAACCACCCATCTCACAACACCGCCCTGTTTGCCGCCCGCTGCTGAGC
AATCCCTACTTGATTCAAGCATGTCAAAAGAGAATTTGAACCCTTTAGCT
GATTTCTGTGCTTCTTTGTTTTACCCAAACAAAGAAAACGAGCTGGGCTG
tgatgactgaATGGCTGATAAAGAATGCGAAGAGACAGCTATCAGCTTCA
GCAACCCAATCTCGcTATACGTTCCGATCACCGATGGGAGTGCAATTCAA
CAACAAAAACTTATCCCTCCAAATTCTTCCGTCTATGAACCTGCTTTCAA
TgcaTTCAATTTAGGCGTGGAATTACCTCAGCATATACAACCAGCAAGCC
ATCACCAAAAGACTTTACAACAACATAACACACAACCCTATCATCAACAA
GCGTGGCCTAACCAGACACTCCAGGCTCAACACCCTACATTCATAGAAGC
TCCTTCCACAGCTAACAAAGTTCTCCCCATTTTCGAAGGTCAAAGTTTCC
CGTTTCGATTATGGTATTTGGTCAATCATGAATTTTATGATGACGTAATC
AAGTGGAGTGATGATGGGAATTACGTCATTATTACGTCAGAGGGGCGATT
TGAAGATAAGGTTTTGATCGAACCTCGAGATCGTATCTTTAAAACGACCA
GCATGAAGTCTTTCATTCGCCAGTTGAACTTGTATGGTTTTCACAAAGTC
CAGTTGGACAAGGATAAAAACTTTTCGCATTTGAACGTCAAAGATAAAGC
GAGTTGGCCAGAAACCGTCTTTGCGCATTCATCTTTCAAAAGATCACGTC
AAGAACTTTTAGAGCAAGTGAGACGACGTTGTAAAGTCAAGCaacacaaa
caaacaaaagcTCAAGGTTTTCCCGTCGAATCTTACCCGTCAACGTCGTC
CGTCAGTAACCCAAAGAAACGGcgaaatatgtttttagaaTATTCAAACA
TGGTAGCATCTTCATCTGCTTCAAATCAACAACAATCTTCAACCCAACTC
CAAGAATCACAGTCTGAAAATCTTCAACAAACGTACAATCCATCAGCAAG
TGAAATTATGATGCAATACCCTAACCTTTTACCACAACCTGATCAATTCT
TAACTGCTGGACGCGATGCCATGATGGCGACAACCTCCGCACAACGTCTC
TCTCCCGCTTCTTCCGTCAAACGAAACCTGCAAGCAATCGACTGGGGAAA
TATCTCAAACATAAATAACTCCTCGACAAGCACAACAAACGAAGATGTGT
CACCGAGATTCGACTGTCAGATCAACCAGTTACAATCTCCATCAACGAAC
CGACAAGTGTCTCTTCGAGAGAAAACCACCCATCTCACAACACCGCCCTG
TTTGCCGCCCGCTGCTGAGCAATCCCTACTTGATTCAAGCATGTCAAAAG
AGAATTTGAACCCTTTAGCTGATTTCTGTGCTTCTTTGTTTTACCCAAAC
AAAGAAAACGAGCTGGGCTGtgatgactgaATGGCTGATAAAGAATGCGA
AGAGACAGCTATCAGCTTCAGCAACCCAATCTCGcTATACGTTCCGATCA
CCGATGGGAGTGCAATTCAACAACAAAAACTTATCCCTCCAAATTCTTCC
GTCTATGAACCTGCTTTCAATgcaTTCAATTTAGGCGTGGAATTACCTCA
GCATATACAACCAGCAAGCCATCACCAAAAGACTTTACAACAACATAACA
CACAACCCTATCATCAACAAGCGTGGCCTAACCAGACACTCCAGGCTCAA
CACCCTACATTCATAGAAGCTCCTTCCACAGCTAACAAAGTTCTCCCCAT
TTTCGAAGGTCAAAGTTTCCCGTTTCGATTATGGTATTTGGTCAATCATG
AATTTTATGATGACGTAATCAAGTGGAGTGATGATGGGAATTACGTCATT
ATTACGTCAGAGGGGCGATTTGAAGATAAGGTTTTGATCGAACCTCGAGA
TCGTATCTTTAAAACGACCAGCATGAAGTCTTTCATTCGCCAGTTGAACT
TGTATGGTTTTCACAAAGTCCAGTTGGACAAGGATAAAAACTTTTCGCAT
TTGAACGTCAAAGATAAAGCGAGTTGGCCAGAAACCGTCTTTGCGCATTC
ATCTTTCAAAAGATCACGTCAAGAACTTTTAGAGCAAGTGAGACGACGTT
GTAAAGTCAAGCaacacaaacaaacaaaagcTCAAGGTTTTCCCGTCGAA
TCTTACCCGTCAACGTCGTCCGTCAGTAACCCAAAGAAACGGcgaaatat
gtttttagaaTATTCAAACATGGTAGCATCTTCATCTGCTTCAAATCAAC
AACAATCTTCAACCCAACTCCAAGAATCACAGTCTGAAAATCTTCAACAA
ACGTACAATCCATCAGCAAGTGAAATTATGATGCAATACCCTAACCTTTT
ACCACAACCTGATCAATTCTTAACTGCTGGACGCGATGCCATGATGGCGA
CAACCTCCGCACAACGTCTCTCTCCCGCTTCTTCCGTCAAACGAAACCTG
CAAGCAATCGACTGGGGAAATATCTCAAACATAAATAACTCCTCGACAAG
CACAACAAACGAAGATGTGTCACCGAGATTCGACTGTCAGATCAACCAGT
TACAATCTCCATCAACGAACCGACAAGTGTCTCTTCGAGAGAAAACCACC
CATCTCACAACACCGCCCTGTTTGCCGCCCGCTGCTGAGCAATCCCTACT
TGATTCAAGCATGTCAAAAGAGAATTTGAACCCTTTAGCTGATTTCTGTG
CTTCTTTGTTTTACCCAAACAAAGAAAACGAGCTGGGCTGtgatgactga
ATGGCTGATAAAGAATGCGAAGAGACAGCTATCAGCTTCAGCAACCCAAT
CTCGcTATACGTTCCGATCACCGATGGGAGTGCAATTCAACAACAAAAAC
TTATCCCTCCAAATTCTTCCGTCTATGAACCTGCTTTCAATgcaTTCAAT
TTAGGCGTGGAATTACCTCAGCATATACAACCAGCAAGCCATCACCAAAA
GACTTTACAACAACATAACACACAACCCTATCATCAACAAGCGTGGCCTA
ACCAGACACTCCAGGCTCAACACCCTACATTCATAGAAGCTCCTTCCACA
GCTAACAAAGTTCTCCCCATTTTCGAAGGTCAAAGTTTCCCGTTTCGATT
ATGGTATTTGGTCAATCATGAATTTTATGATGACGTAATCAAGTGGAGTG
ATGATGGGAATTACGTCATTATTACGTCAGAGGGGCGATTTGAAGATAAG
GTTTTGATCGAACCTCGAGATCGTATCTTTAAAACGACCAGCATGAAGTC
TTTCATTCGCCAGTTGAACTTGTATGGTTTTCACAAAGTCCAGTTGGACA
AGGATAAAAACTTTTCGCATTTGAACGTCAAAGATAAAGCGAGTTGGCCA
GAAACCGTCTTTGCGCATTCATCTTTCAAAAGATCACGTCAAGAACTTTT
AGAGCAAGTGAGACGACGTTGTAAAGTCAAGCaacacaaacaaacaaaag
cTCAAGGTTTTCCCGTCGAATCTTACCCGTCAACGTCGTCCGTCAGTAAC
CCAAAGAAACGGcgaaatatgtttttagaaTATTCAAACATGGTAGCATC
TTCATCTGCTTCAAATCAACAACAATCTTCAACCCAACTCCAAGAATCAC
AGTCTGAAAATCTTCAACAAACGTACAATCCATCAGCAAGTGAAATTATG
ATGCAATACCCTAACCTTTTACCACAACCTGATCAATTCTTAACTGCTGG
ACGCGATGCCATGATGGCGACAACCTCCGCACAACGTCTCTCTCCCGCTT
CTTCCGTCAAACGAAACCTGCAAGCAATCGACTGGGGAAATATCTCAAAC
ATAAATAACTCCTCGACAAGCACAACAAACGAAGATGTGTCACCGAGATT
CGACTGTCAGATCAACCAGTTACAATCTCCATCAACGAACCGACAAGTGT
CTCTTCGAGAGAAAACCACCCATCTCACAACACCGCCCTGTTTGCCGCCC
GCTGCTGAGCAATCCCTACTTGATTCAAGCATGTCAAAAGAGAATTTGAA
CCCTTTAGCTGATTTCTGTGCTTCTTTGTTTTACCCAAACAAAGAAAACG
AGCTGGGCTGtgatgactgaATGGCTGATAAAGAATGCGAAGAGACAGCT
ATCAGCTTCAGCAACCCAATCTCGcTATACGTTCCGATCACCGATGGGAG
TGCAATTCAACAACAAAAACTTATCCCTCCAAATTCTTCCGTCTATGAAC
CTGCTTTCAATgcaTTCAATTTAGGCGTGGAATTACCTCAGCATATACAA
CCAGCAAGCCATCACCAAAAGACTTTACAACAACATAACACACAACCCTA
TCATCAACAAGCGTGGCCTAACCAGACACTCCAGGCTCAACACCCTACAT
TCATAGAAGCTCCTTCCACAGCTAACAAAGTTCTCCCCATTTTCGAAGGT
CAAAGTTTCCCGTTTCGATTATGGTATTTGGTCAATCATGAATTTTATGA
TGACGTAATCAAGTGGAGTGATGATGGGAATTACGTCATTATTACGTCAG
AGGGGCGATTTGAAGATAAGGTTTTGATCGAACCTCGAGATCGTATCTTT
AAAACGACCAGCATGAAGTCTTTCATTCGCCAGTTGAACTTGTATGGTTT
TCACAAAGTCCAGTTGGACAAGGATAAAAACTTTTCGCATTTGAACGTCA
AAGATAAAGCGAGTTGGCCAGAAACCGTCTTTGCGCATTCATCTTTCAAA
AGATCACGTCAAGAACTTTTAGAGCAAGTGAGACGACGTTGTAAAGTCAA
GCaacacaaacaaacaaaagcTCAAGGTTTTCCCGTCGAATCTTACCCGT
CAACGTCGTCCGTCAGTAACCCAAAGAAACGGcgaaatatgtttttagaa
TATTCAAACATGGTAGCATCTTCATCTGCTTCAAATCAACAACAATCTTC
AACCCAACTCCAAGAATCACAGTCTGAAAATCTTCAACAAACGTACAATC
CATCAGCAAGTGAAATTATGATGCAATACCCTAACCTTTTACCACAACCT
GATCAATTCTTAACTGCTGGACGCGATGCCATGATGGCGACAACCTCCGC
ACAACGTCTCTCTCCCGCTTCTTCCGTCAAACGAAACCTGCAAGCAATCG
ACTGGGGAAATATCTCAAACATAAATAACTCCTCGACAAGCACAACAAAC
GAAGATGTGTCACCGAGATTCGACTGTCAGATCAACCAGTTACAATCTCC
ATCAACGAACCGACAAGTGTCTCTTCGAGAGAAAACCACCCATCTCACAA
CACCGCCCTGTTTGCCGCCCGCTGCTGAGCAATCCCTACTTGATTCAAGC
ATGTCAAAAGAGAATTTGAACCCTTTAGCTGATTTCTGTGCTTCTTTGTT
TTACCCAAACAAAGAAAACGAGCTGGGCTGtgatgactga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038135XLOC_038135Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060637-proteinTCONS_00060637-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060637-exon-scaffold_348-1491911889:170398..170539TCONS_00060637-exon-scaffold_348-1491911889:170398..170539Clytia hemisphaericaexon
TCONS_00060637-exon-scaffold_348-1510915933:170398..170539TCONS_00060637-exon-scaffold_348-1510915933:170398..170539Clytia hemisphaericaexon
TCONS_00060637-exon-scaffold_348-1575043694:170398..170539TCONS_00060637-exon-scaffold_348-1575043694:170398..170539Clytia hemisphaericaexon
TCONS_00060637-exon-scaffold_348-1491911889:170904..170959TCONS_00060637-exon-scaffold_348-1491911889:170904..170959Clytia hemisphaericaexon
TCONS_00060637-exon-scaffold_348-1510915933:170904..170959TCONS_00060637-exon-scaffold_348-1510915933:170904..170959Clytia hemisphaericaexon
TCONS_00060637-exon-scaffold_348-1575043694:170904..170959TCONS_00060637-exon-scaffold_348-1575043694:170904..170959Clytia hemisphaericaexon
TCONS_00060637-exon-scaffold_348-1491911889:173128..173217TCONS_00060637-exon-scaffold_348-1491911889:173128..173217Clytia hemisphaericaexon
TCONS_00060637-exon-scaffold_348-1510915933:173128..173217TCONS_00060637-exon-scaffold_348-1510915933:173128..173217Clytia hemisphaericaexon
TCONS_00060637-exon-scaffold_348-1575043694:173128..173217TCONS_00060637-exon-scaffold_348-1575043694:173128..173217Clytia hemisphaericaexon
TCONS_00060637-exon-scaffold_348-1491911889:175185..175692TCONS_00060637-exon-scaffold_348-1491911889:175185..175692Clytia hemisphaericaexon
TCONS_00060637-exon-scaffold_348-1510915933:175185..175692TCONS_00060637-exon-scaffold_348-1510915933:175185..175692Clytia hemisphaericaexon
TCONS_00060637-exon-scaffold_348-1575043694:175185..175692TCONS_00060637-exon-scaffold_348-1575043694:175185..175692Clytia hemisphaericaexon
TCONS_00060637-exon-scaffold_348-1491911889:175926..176145TCONS_00060637-exon-scaffold_348-1491911889:175926..176145Clytia hemisphaericaexon
TCONS_00060637-exon-scaffold_348-1510915933:175926..176145TCONS_00060637-exon-scaffold_348-1510915933:175926..176145Clytia hemisphaericaexon
TCONS_00060637-exon-scaffold_348-1575043694:175926..176145TCONS_00060637-exon-scaffold_348-1575043694:175926..176145Clytia hemisphaericaexon
TCONS_00060637-exon-scaffold_348-1491911889:176717..176802TCONS_00060637-exon-scaffold_348-1491911889:176717..176802Clytia hemisphaericaexon
TCONS_00060637-exon-scaffold_348-1510915933:176717..176802TCONS_00060637-exon-scaffold_348-1510915933:176717..176802Clytia hemisphaericaexon
TCONS_00060637-exon-scaffold_348-1575043694:176717..176802TCONS_00060637-exon-scaffold_348-1575043694:176717..176802Clytia hemisphaericaexon
TCONS_00060637-exon-scaffold_348-1491911889:177696..177787TCONS_00060637-exon-scaffold_348-1491911889:177696..177787Clytia hemisphaericaexon
TCONS_00060637-exon-scaffold_348-1510915933:177696..177787TCONS_00060637-exon-scaffold_348-1510915933:177696..177787Clytia hemisphaericaexon
TCONS_00060637-exon-scaffold_348-1575043694:177696..177787TCONS_00060637-exon-scaffold_348-1575043694:177696..177787Clytia hemisphaericaexon
TCONS_00060637-exon-scaffold_348-1491911889:177919..178330TCONS_00060637-exon-scaffold_348-1491911889:177919..178330Clytia hemisphaericaexon
TCONS_00060637-exon-scaffold_348-1510915933:177919..178330TCONS_00060637-exon-scaffold_348-1510915933:177919..178330Clytia hemisphaericaexon
TCONS_00060637-exon-scaffold_348-1575043694:177919..178330TCONS_00060637-exon-scaffold_348-1575043694:177919..178330Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_348supercontigscaffold_348:170398..178330 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.101255	0.371152	0	0.196921	2.31087e-05	0.270279	9.46189e-09	0.519633	0.214004	0.185555	0.566043	0.152002	0.101339	0.122782	0.129784	0	0.323357	0.174351	0.242965	0	9.39495e-07	0	0.552869	0.0783932	20.1702	13.0895	0.00204632	0.111491	0.53483	0.458381
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000232HSF_DNA-bd
IPR011991WHTH_DNA-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060637 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top