Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060624 ID=TCONS_00060624|Name=TCONS_00060624|organism=Clytia hemisphaerica|type=transcript|length=1495bpRun BLAST on NCBI transcript from alignment at scaffold_348:30162..34005+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060624 ID=TCONS_00060624|Name=TCONS_00060624|organism=Clytia hemisphaerica|type=transcript|length=3844bp|location=Sequence derived from alignment at scaffold_348:30162..34005+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00060624 vs. Swiss-Prot (Human)
Match: NOTC2 (Neurogenic locus notch homolog protein 2 OS=Homo sapiens GN=NOTCH2 PE=1 SV=3) HSP 1 Score: 178.718 bits (452), Expect = 3.836e-47 Identity = 131/321 (40.81%), Postives = 184/321 (57.32%), Query Frame = 1 Query: 175 CYRKPCVAANTDRCENKPYGRYQCICKEGFSGRRCETNDDDCRGVKCLNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDCRGVKCLNGGTCEDG--IDSFTXXXXXXXXXXXXXXXIDDCKGVKCLNGGTCEDGIASFTCQCKRGFNGKFCKNNIDDCRGVKCLNGGTCEDGIASFTCQCKRGFNGKFCKNNIDDCRGVKCLNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDCKRVRCLNGGTCKDGIASFTCQCKPGFSGKFC--QVPSCHPNPCQNGGKCLKHGNAIKCWCKQGYEGRFCETSVKECNYHCSRQRGWC 1125 C PC N C+N G Y+C CK+GF G C+ N D+C CLN GTC D I+ +TC C + GK C+ + C C N C++ +S+TC C G+ G+ C +ID+C C+N G C + S+ C+C GF+G C+ +IDDC C NGG+C DG+ +F+C C GF G C+ ++++C C NGGTC D + S+TCKC+ GF+G C+NNI++C C NGGTC DGI SF+C C GF+G FC ++ C +PC N G C+ +C C GY G+ C+T V C+ + +G C Sbjct: 761 CLSNPC--QNGGTCDNLVNG-YRCTCKKGFKGYNCQVNIDECASNPCLNQGTCFDDISGYTCHCVLPYTGKNCQTVLAPCSPNPCENAAVCKESPNFESYTCLCAPGWQGQRCTIDIDECISKPCMNHGLCHNTQGSYMCECPPGFSGMDCEEDIDDCLANPCQNGGSCMDGVNTFSCLCLPGFTGDKCQTDMNECLSEPCKNGGTCSDYVNSYTCKCQAGFDGVHCENNINECTESSCFNGGTCVDGINSFSCLCPVGFTGSFCLHEINECSSHPCLNEGTCVDGLGTYRCSCPLGYTGKNCQTLVNLCSRSPCKNKGTC 1078 HSP 2 Score: 162.155 bits (409), Expect = 1.000e-41 Identity = 125/318 (39.31%), Postives = 169/318 (53.14%), Query Frame = 1 Query: 175 CYRKPCVAANTDRCENKPYGRYQCICKEGFSGRRCETNDDDCRGVKCLNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDCRGVKCLNGGTCEDGIDSFTXXXXXXXXXXXXXXXIDDCKGVKCLNGGTCEDGIASFTCQCKRGFNGKFCKNNIDDCRGVKCLNGGTCEDGIASFTCQCKRGFNGKFCKNNIDDCRGVKCLNGGTCEDGIASF-----TXXXXXXXXXXXXXXXIDDCKR-----VRCLNGGTCKDGIASFTCQCKPGFSGKFC--QVPSCHPNPCQNGGKCLKHGNAIKCWCKQGYEGRFCETSVKEC 1092 C KPC+ N C N G Y C C GFSG CE + DDC C NGG+C DG+ +F+C C GF G C+ ++++C C NGGTC D ++S+TCKC+ GF+G C+NNI++C C NGGTC DGI SF+C C GF G FC + I++C CLN GTC DG+ ++ C C G+ GK C+ ++ C C N GTC A + + +I +R C + G C + + CQC G++G +C Q+ C NPCQ+G C +C C GY+G CE V EC Sbjct: 877 CISKPCM--NHGLCHNT-QGSYMCECPPGFSGMDCEEDIDDCLANPCQNGGSCMDGVNTFSCLCLPGFTGDKCQTDMNECLSEPCKNGGTCSDYVNSYTCKCQAGFDGVHCENNINECTESSCFNGGTCVDGINSFSCLCPVGFTGSFCLHEINECSSHPCLNEGTCVDGLGTYRCSCPLGYTGKNCQTLVNLCSRSPCKNKGTCVQKKAESQCLCPSGWAGAYCDVPNVSCDIAASRRGVLVEHLCQHSGVCINAGNTHYCQCPLGYTGSYCEEQLDECASNPCQHGATCSDFIGGYRCECVPGYQGVNCEYEVDEC 1191 HSP 3 Score: 154.066 bits (388), Expect = 3.691e-39 Identity = 108/290 (37.24%), Postives = 158/290 (54.48%), Query Frame = 1 Query: 235 RYQCICKEGFSGRRCETNDDDCRGVKCLNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDCRGVKCLNGGTCEDGIDSFTXXXXXXXXXXXXXXXIDDCKGVKCLNGGTCEDGIASFTCQCKRGFNGKFCKNNIDDCRGVKCLNGGTCEDGIASFTCQCKRGFNGKFCKNNIDDCRGVKCLNGGTCEDG--IASFTXXXXXXXXXXXXXXXIDDCKRVRCLNGGTCKDGIASFTCQCKPGFSGKFCQ--VPSCHPNPCQNGGKCLKHGNAIKCWCKQGYEGRFCETSVKEC 1092 RY C+C GF+G+RC + D+C C G TC +G+ F C C G + C + +++C C++G C G+ + C C G+ G C+ + ++C C NGGTC++ + + C CK+GF G C+ NID+C CLN GTC D I+ +TC C + GK C+ + C C N C++ S+TC C G+ G+ C +ID+C C+N G C + S+ C+C PGFSG C+ + C NPCQNGG C+ N C C G+ G C+T + EC Sbjct: 665 RYSCVCSPGFTGQRCNIDIDECASNPCRKGATCINGVNGFRCICPEGPHHPSCYSQVNECLSNPCIHG-NCTGGLSGYKCLCDAGWVGINCEVDKNECLSNPCQNGGTCDNLVNGYRCTCKKGFKGYNCQVNIDECASNPCLNQGTCFDDISGYTCHCVLPYTGKNCQTVLAPCSPNPCENAAVCKESPNFESYTCLCAPGWQGQRCTIDIDECISKPCMNHGLCHNTQGSYMCECPPGFSGMDCEEDIDDCLANPCQNGGSCMDGVNTFSCLCLPGFTGDKCQTDMNEC 953 HSP 4 Score: 144.821 bits (364), Expect = 3.549e-36 Identity = 119/317 (37.54%), Postives = 164/317 (51.74%), Query Frame = 1 Query: 214 CENKPY-GRYQCICKEGFSGRRCETNDDDCRGV---KCLNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDCRGVKCLNGGTCEDGIDSFTXXXXXXXXXXXXXXXIDDCKGVKCLNGGTCEDGIASFTCQCKRGFNGKFCKNNIDDCRGVKCLNGGTCEDGIASFTCQCKRGFNGKFCKNNIDDCRGVKCLNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDCKRVRCLNGGTCKDGIASFTCQCKPGFSGKFCQV--PSCHPNPCQNGGKCLKHGNAIKCWCKQGYEGRFCETSVKECNYHCSRQRGWCRIMGTDG 1146 C+ P G+Y C C +G+ G C + D+C C + G C + +F C+C G+ G C+ +I++C C N TC D I FTC C GF G C+ I++C+ C+N G C D + F C C GF G C+ +IDDC CLNG C D + CQC GF G C+ NID+C C + G C+DGI S+TC C G+ G C + ID+C CLN G C D + + C C+PG SG C++ C NPC + G C+ N C C G+ G+ C + EC + R+ C I G +G Sbjct: 390 CDTNPLNGQYICTCPQGYKGADCTEDVDECAMANSNPCEHAGKCVNTDGAFHCECLKGYAGPRCEMDINECHSDPCQNDATCLDKIGGFTCLCMPGFKGVHCELEINECQSNPCVNNGQCVDKVNRFQCLCPPGFTGPVCQIDIDDCSSTPCLNGAKCIDHPNGYECQCATGFTGVLCEENIDNCDPDPC-HHGQCQDGIDSYTCICNPGYMGAICSDQIDECYSSPCLNDGRCIDLVNGYQCNCQPGTSGVNCEINFDDCASNPCIH-GICMDGINRYSCVCSPGFTGQRCNIDIDECASNPCRKGATC-INGVNG 703 HSP 5 Score: 132.88 bits (333), Expect = 1.782e-32 Identity = 119/342 (34.80%), Postives = 170/342 (49.71%), Query Frame = 1 Query: 238 YQCICKEGFSGRRCETNDDDCRGVKCLNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDCRGVKCLNGGTCEDGIDSFTXXXXXXXXXXXXXXXIDDC------KGVK----CLNGGTCEDGIASFTCQCKRGFNGKFCKNNIDDCRGVKCLNGGTCEDGIASFTCQCKRGFNGKFCKNNIDDCRGVKCLNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDCKR-VRCLNGGTCKDGIASFTCQCKPGFSGKFCQ--VPSCHPNPCQNGGK--CLKHGNAIKCWCKQGYEGRFCETSVKECNYHCSRQRGWCRIMG--TDGRIYDNYCQFERAQCKNKSLQIK 1212 + C+C GF+G C ++C CLN GTC DG+ ++ C C G+ GK C+ ++ C C N GTC C C +G+ G +C C +GV C + G C + + CQC G+ G +C+ +D+C C +G TC D I + C+C G+ G C+ +D+C+ C NGGTC D + F C C G G C+ NIDDC R CLNGG C D I ++C+C PGF+G+ C+ + C NPC + G C++ N C C+ + GR CET V C G C + DG I F A+C++ Q+K Sbjct: 1009 FSCLCPVGFTGSFCLHEINECSSHPCLNEGTCVDGLGTYRCSCPLGYTGKNCQTLVNLCSRSPCKNKGTCVQKKAESQCLCPSGWAGAYCDVPNVSCDIAASRRGVLVEHLCQHSGVCINAGNTHYCQCPLGYTGSYCEEQLDECASNPCQHGATCSDFIGGYRCECVPGYQGVNCEYEVDECQNQPCQNGGTCIDLVNHFKCSCPPGTRGLLCEENIDDCARGPHCLNGGQCMDRIGGYSCRCLPGFAGERCEGDINECLSNPCSSEGSLDCIQLTNDYLCVCRSAFTGRHCETFVDVCPQMPCLNGGTCAVASNMPDGFICRCPPGFSGARCQSSCGQVK 1350 HSP 6 Score: 132.494 bits (332), Expect = 2.821e-32 Identity = 123/321 (38.32%), Postives = 172/321 (53.58%), Query Frame = 1 Query: 157 YAGYLGCY-RKPCVAANTDRCENKPYGRYQCICKEGFSGRRCETNDDDCRGVKCLNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDCRGV-KCLNGGTCEDGIDSFTXXXXXXXXXXXXXXXIDDCKGVKCLNGGTC-EDGIASFTCQCKRGFNGKFCKNNIDDCRGVKCLNGGTCEDGIASFTCQCKRGFNGKFCKNNIDDC--RGVKCLNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDCKRVRCLNGGTCKDGIASFTCQCKPGFSGKFCQV-PSCHPNPCQNGGKC---LKHGNAIKCWCKQGYEGRFCETSVKEC 1092 Y+ C+ +PC+ T C Y+C C+ GF+G+ C+ D C C NG TC F+CKC GF G+ C+ ++++C C +GGTC + S+ C+C GF G++C + C C+NGGTC + G +F C C GF G C+ NIDDC +C NGG C DG+ ++ C+C + G+FC ++D+C + C NGGTC + + C C NG++G C NIDDC C G TC D +ASF+C C G +G C + +C NPC G C +G I C C QGY+G C V EC Sbjct: 103 YSTSHPCFVSRPCLNGGT--CHMLSRDTYECTCQVGFTGKECQWTDA-CLSHPCANGSTCTTVANQFSCKCLTGFTGQKCETDVNECDIPGHCQHGGTCLNLPGSYQCQCPQGFTGQYCDSLYVPCAPSPCVNGGTCRQTGDFTFECNCLPGFEGSTCERNIDDCPNHRCQNGGVCVDGVNTYNCRCPPQWTGQFCTEDVDECLLQPNACQNGGTCANRNGGYGCVCVNGWSGDDCSENIDDCAFASCTPGSTCIDRVASFSCMCPEGKAGLLCHLDDACISNPCHKGALCDTNPLNGQYI-CTCPQGYKGADCTEDVDEC 419 HSP 7 Score: 110.923 bits (276), Expect = 1.989e-25 Identity = 106/302 (35.10%), Postives = 153/302 (50.66%), Query Frame = 1 Query: 229 YGRYQCICKEGFSGRRCETNDDDCRGVKCLNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDC------RGVK----CLNGGTCEDGIDSFTXXXXXXXXXXXXXXXIDDCKGVKCLNGGTCEDGIASFTCQCKRGFNGKFCKNNIDDCRGVKCLNGGTCEDGIASFTCQCKRGFNGKFCKNNIDDC-RGVKCLNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDCKRVRCLNGGT--CKDGIASFTCQCKPGFSGKFCQ--VPSCHPNPCQNGGKCLKHGNA---IKCWCKQGYEGRFCETS 1080 G Y+C C G++G+ C+T + C C N GTC A C C +G+ G +C C RGV C + G C + ++ C+C G+ G +C+ +D+C C +G TC D I + C+C G+ G C+ +D+C+ C NGGTC D + F C C G G C+ NIDDC RG CLNGG C D I ++C+C GF G+ C+ +I++C C + G+ C + C C+ F+G+ C+ V C PC NGG C N C C G+ G C++S Sbjct: 1044 LGTYRCSCPLGYTGKNCQTLVNLCSRSPCKNKGTCVQKKAESQCLCPSGWAGAYCDVPNVSCDIAASRRGVLVEHLCQHSGVCINAGNTHYCQCPLGYTGSYCEEQLDECASNPCQHGATCSDFIGGYRCECVPGYQGVNCEYEVDECQNQPCQNGGTCIDLVNHFKCSCPPGTRGLLCEENIDDCARGPHCLNGGQCMDRIGGYSCRCLPGFAGERCEGDINECLSNPCSSEGSLDCIQLTNDYLCVCRSAFTGRHCETFVDVCPQMPCLNGGTCAVASNMPDGFICRCPPGFSGARCQSS 1345 HSP 8 Score: 94.7449 bits (234), Expect = 3.279e-20 Identity = 92/262 (35.11%), Postives = 130/262 (49.62%), Query Frame = 1 Query: 232 GRYQCICKEGFSGRRCETNDDDCRGVKCLNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDC-RGVKCLNGGTCEDGIDSFTXXXXXXXXXXXXXXXIDDCKGVKCLNGGT--CEDGIASFTCQCKRGFNGKFCKNNIDDCRGVKCLNGGTCEDGIAS-----FTCQCKRGFNGKFCKNNIDDCRGVKCLNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDCKRVRCLNGGTCKDG--IASFTCQCKPGFSGKFCQVPSCHPN 987 G Y+C C G+ G CE D+C+ C NGGTC D + F C C G G C+ NIDDC RG CLNGG C D I ++C+C GF G+ C+ +I++C C + G+ C + C C+ F G+ C+ +D C + CLNGGTC +AS F C+C GF+G C+++ C VKC G C ++ C C +GG+C ++CQC P FSG C++ + P+ Sbjct: 1169 GGYRCECVPGYQGVNCEYEVDECQNQPCQNGGTCIDLVNHFKCSCPPGTRGLLCEENIDDCARGPHCLNGGQCMDRIGGYSCRCLPGFAGERCEGDINECLSNPCSSEGSLDCIQLTNDYLCVCRSAFTGRHCETFVDVCPQMPCLNGGTC--AVASNMPDGFICRCPPGFSGARCQSS---CGQVKCRKGEQC------VHTASGPRCFCPSPRDCESGCASSPCQHGGSCHPQRQPPYYSCQCAPPFSGSRCELYTAPPS 1419 HSP 9 Score: 93.9745 bits (232), Expect = 5.063e-20 Identity = 79/204 (38.73%), Postives = 112/204 (54.90%), Query Frame = 1 Query: 520 DDCKGVKCLNGGTC--EDGIASFTCQCKRGFNGKFCKNNIDDCRGV--KCLNGGTCED-GIASFTCQCKRGFNGKFCKNNIDDCRGVKCLNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDCKRV-RCLNGGTCKDGIASFTCQCKPGFSGKFCQ---VPSCHPNPCQNGGKCLKHGN-AIKCWCKQGYEGRFCETSVKECNYH 1101 D C+ +C NGGTC + + TC+C GF G+ C+ + V CLNGGTC ++ C C+ GF GK C+ D C C NG TC F+CKC GF G+ C+ ++++C C +GGTC + S+ CQC GF+G++C VP C P+PC NGG C + G+ +C C G+EG CE ++ +C H Sbjct: 66 DPCEKNRCQNGGTCVAQAMLGKATCRCASGFTGEDCQYSTSHPCFVSRPCLNGGTCHMLSRDTYECTCQVGFTGKECQWT-DACLSHPCANGSTCTTVANQFSCKCLTGFTGQKCETDVNECDIPGHCQHGGTCLNLPGSYQCQCPQGFTGQYCDSLYVP-CAPSPCVNGGTCRQTGDFTFECNCLPGFEGSTCERNIDDCPNH 267 The following BLAST results are available for this feature:
BLAST of TCONS_00060624 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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