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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060621 ID=TCONS_00060621|Name=TCONS_00060621|organism=Clytia hemisphaerica|type=transcript|length=3377bp
GCTCATAGTGTTCGAAGATTTTCGTAAAATGTTCTTTGAGTAATTTCATA
GTCCTTCGATTGACcatataaacaataaaaatcaTTACACCACGAAACGC
CCTCAACAAAATATACAGTAGCCCGAATACcgaattgaaaatttcttcat
tttctctcAAATGGTCACTTTTAATTTGAATCAGTCCAAATAATTCGGTT
ATTCCCAAAACGAGCATTAATTTGATCCCAATTTTCAGCAAATCGGTATC
CTTTTTCGTATCTTTNGATTTGAATCAATCCAAATAATTCGGTTATTCCC
AAAACGAGCATTAATTTGATCCCAATTTTCAGCAAATCGGTATCCTTTTT
CGTATCTTTGTTTAGAGTGCGCTCGACCTCTGATTTTCTTCTACGGATCG
ATGCCAAAACAATACAAAGACAAACAAAGCAAAGCACATAACCAATGATT
GCCGGGATGAAATAAAATCCAAGTGAAAGATAAAAATCTCCAAACCAACA
TCGATTTTCgaaatgaaaatcaaatgtGTTCGATTCTTCTAATCCAATGA
TCGCCAATAAAATGattaaagaaatgaaaactgTTATTCCCGATCTTTTA
CGCAAAATATAAATGGATTCGTGAAGAGATAATGGTCTTGAAAGTTTCTT
GGTAAATTGCAACGTGATATCAATTGCTACGATGACGctccaaaacaaaa
cattcaacATAGACCAGTAAAAGATCATACCAAACCATTTACAGGTTGTT
GTTTGTGTTTCAATGTAAGAAGTTACGAGAAATAAAATATCACTTGTCAT
CAGGAAAATCACCAAGATCATCACACAGTAGGCACCTCTATTTCGAATGG
CTGCAACTTTAGCAAAAACGACAAGAAAAATGACGTAACATATAAGACTT
AGTATTGTCCCGATGAGTGAAATATAAGATTTGGCATCATCGACAGGCTT
TACCCAAGAGTATTGTTGGAACTTGTAATCCTCCGACTTGTCAACTCGGC
ATATCTGGAATCCTCTCTCTAAAGGTGTATATTCACCAGCATTGTAGCTT
TGAAGGTTTTCCCGTTCAGAATTCCAAATATTAAGAGAACCATTACTTGA
AATGTTATAGTTTGAGGGATTAATGTTTTTCCGGCCACACGTTGAATACA
AATGAAACTGTTCACAAGAATAGATTTCCTCACGAATTTCACCTTTCTCA
AAGGTTATTATGATGTTAACAGAAGCGTTTCTCGATTCTTGCAAGCTGGC
AATAGCTTGATTACAGTCCTGTTCAGGTTTAATGGTAATTTTGTTATATT
TGGCACATAATTTGAACCGATCGAAAGTTCTGATCACATCGTAACCATAC
AGATGAGTGAAAAGATGATTCTTCTGACTGGTGACCACAGCTTTGGTGAT
GTTTGGATTAGATTGTGTTTCCTGAAGAAGCTTTTCCTTCCAGTTTGGAT
TATTCCTAAAATCTGTCGATTGAAGAACGAATAAGTCTTTCGGCAATATC
CATTTGAGTTTCAAGAGATTAAAAAATGCCGGAATACTCGAATTACTATT
TTCGTTCATGAAAACATACAGCGTTAGACGAGGAAGCTGCGTGATACATC
TCAATTCTGTAACGAAAGCTTGGAATCTGTTTGGAGCACATTTATTTTCT
TccaaatttgattgaaaaccAGGGTCACAAGTGCACACGTCTTTCGAGTC
CTTCCGACGCGAGCTTCCAGAGGGGCAATTACAATATCCATTATTCTTAT
GTCCCAATAAACAAGTACACGATGAGGGACGCTCAAGAGAATTGATTGTG
CCAGCGTTACAAACACAATTACCATTATTCCAATGACGCCACGGAGGACA
ATCACATTTCCCGTCCGGTAAAGTGAAAGTATGTTCCATACAAATACATT
TCCCATCCGATGTCCAAACTTTGGGAAAGGGGCAATCCAATATTTTACGA
CGAGTGACATTGAAACAAGTTCCATCCGGATGAGGAAGCAAGCCTTTTTT
GCAAACACATTCACCATTTCGGTCTCTCTCTCTATCAAAGGGACATTCGC
ATTTACCATCTGAGGTAGAGACCATTCCTGGCCTACAAATACATCCGTCT
CCTTCTGAATTTACATGATCTACCGAACACCAACAACTCCCATCAGATTG
CGGTTCCATCCCTTGGTGACAAATGCATTCTCCTTGGACAAGACGACGGT
CAGGTGCACAAACGCAATCATCCCAGTTAGTAGGCCACCATCCTTCCTTA
CAAACACAATCACCGTTTTCGTTAGTCACAAAATCACATTTAcaaatatc
attttcatttcCATCGTTTCTTTGAAGTTTAGTACGTTCCTTACAAAAAC
CACATTTGCCATCGATTAACGCTTGACCTGTTCCACATAACTTTCGCTCA
CAATAACGATGTAAACCATGGCGTATTTCTTGATTAACACCGCATTCTTT
AAAGTCGTTTAAATCAATTACTCTATCCCAGCTTTGTCTTTCCCCTCCAG
GAGGTCCACCAGGCGAGCAACTTGTTACATCAACAGAGCTTGGTAGGCTA
TTCAAACATTTGGAGCAAAAAGGATTTTTAACGAGTTCGTTTTCTGATAG
TTGAAAGTTTGCAGCAACAAGCCGACATAAGGTGGCATCTAACTGGTTGC
ATGTTTTTTTATcacatttgaaaactgaatcCGATTTCACATTGTCTGAG
ACCATTGTGTAGCAATCGTTCAATTTCAAAAGTTCAATGGCAGTATACTT
GTAAATTTTGTACGCCGAATAACAAACTACATCAACAAAATCCCTGTCAT
AATTTGAAACATTGTTACAGTAAgcgcaaaacttgtttttatatAGGTAT
TTGTCATTCCCGAGAACTGGCATTTGATCAACTTGCTCATTGGAAGAACT
GTTTATACAATGTTCAATGTCAATTTCATTTGCACCAGGAAGACATGAAT
CCACCATGATGTAATATTCGAGAATCTCCTCTTCAAACGGGAATAACGGT
AAACAATGTTGCAATTTCGACGATTTAATCACTTTTTGTTGGtaatcatt
gacattttgaGCAATACTTTGATTATTGAATGCGAATTGGTTCCATAGAT
AGTCAATACAACAATCACCAGAGCTTTGGCAACCAGCATTGCATCGGCAT
TCACCTTTCTGTAACCAGCGTTGACATTGGAATCCAGTCCATTGTATTGC
AGAAGAGTTGATTCCACTTGCGTCTAAGAAATCCGATAATGGAAAAGGTT
TTTCATTGGGTGTAAGTGCGATTTCAGTGATATTCCATTTTTGGCAATCC
TCCTGCATCGACACTTCTTGCCAAACCAATAGCATCGAAATGACGATGAG
ATACAAGCTCATATTTTTCTATACCTc Run BLAST on NCBI transcript from alignment at scaffold_348:11453..15141+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060621 ID=TCONS_00060621|Name=TCONS_00060621|organism=Clytia hemisphaerica|type=transcript|length=3689bp|location=Sequence derived from alignment at scaffold_348:11453..15141+ (Clytia hemisphaerica)
GCTCATAGTGTTCGAAGATTTTCGTAAAATGTTCTTTGAGTAATTTCATA
GTCCTTCGATTGACcatataaacaataaaaatcaTTACACCACGAAACGC
CCTCAACAAAATATACAGTAGCCCGAATACcgaattgaaaatttcttcat
tttctctcAAATGGTCACTTTTAATTTGAATCAGTCCAAATAATTCGGTT
ATTCCCAAAACGAGCATTAATTTGATCCCAATTTTCAGCAAATCGGTATC
CTTTTTCGTATCTTTNGATTTGAATCAATCCAAATAATTCGGTTATTCCC
AAAACGAGCATTAATTTGATCCCAATTTTCAGCAAATCGGTATCCTTTTT
CGTATCTTTGTTTAGAGTGCGCTCGACCTCTGATTTTCTTCTACGGATCG
ATGCCAAAACAATACAAAGACAAACAAAGCAAAGCACATAACCAATGATT
GCCGGGATGAAATAAAATCCAAGTGAAAGATAAAAATCTCCAAACCAACA
TCGATTTTCgaaatgaaaatcaaatgtGTTCGATTCTTCTAATCCAATGA
TCGCCAATAAAATGattaaagaaatgaaaactgTTATTCCCGATCTTTTA
CGCAAAATATAAATGGATTCGTGAAGAGATAATGGTCTTGAAAGTTTCTT
GGTAAATTGCAACGTGATATCAATTGCTACGATGACGctccaaaacaaaa
cattcaacATAGACCAGTAAAAGATCATACCAAACCATTTACAGGTTGTT
GTTTGTGTTTCAATGTAAGAAGTTACGAGAAATAAAATATCACTTGTCAT
CAGGAAAATCACCAAGATCATCACACAGTAGGCACCTCTATTTCGAATGG
CTGCAACTTTAGCAAAAACGACAAGAAAAATGACGTAACATATAAGACTT
AGTATTGTCCCGATGAGTGAAATATAAGATTTGGCATCATCGACAGGCTT
TACCCAAGAGTATTGTTGGAACTTGTAATCCTCCGACTTGTCAACTCGGC
ATATCTGGAATCCTCTCTCTAAAGGTGTATATTCACCAGCATTGTAGCTT
TGAAGGTTTTCCCGTTCAGAATTCCAAATATTAAGAGAACCATTACTTGA
AATGTTATAGTTTGAGGGATTAATGTTTTTCCGGCCACACGTTGAATACA
AATGAAACTGTTCACAAGAATAGATTTCCTCACGAATTTCACCTTTCTCA
AAGGTTATTATGATGTTAACAGAAGCGTTTCTCGATTCTTGCAAGCTGGC
AATAGCTTGATTACAGTCCTGTTCAGGTTTAATGGTAATTTTGTTATATT
TGGCACATAATTTGAACCGATCGAAAGTTCTGATCACATCGTAACCATAC
AGATGAGTGAAAAGATGATTCTTCTGACTGGTGACCACAGCTTTGGTGAT
GTTTGGATTAGATTGTGTTTCCTGAAGAAGCTTTTCCTTCCAGTTTGGAT
TATTCCTAAAATCTGTCGATTGAAGAACGAATAAGTCTTTCGGCAATATC
CATTTGAGTTTCAAGAGATTAAAAAATGCCGGAATACTCGAATTACTATT
TTCGTTCATGAAAACATACAGCGTTAGACGAGGAAGCTGCGTGATACATC
TCAATTCTGTAACGAAAGCTTGGAATCTGTTTGGAGCACATTTATTTTCT
TccaaatttgattgaaaaccAGGGTCACAAGTGCACACGTCTTTCGAGTC
CTTCCGACGCGAGCTTCCAGAGGGGCAATTACAATATCCATTATTCTTAT
GTCCCAATAAACAAGTACACGATGAGGGACGCTCAAGAGAATTGATTGTG
CCAGCGTTACAAACACAATTACCATTATTCCAATGACGCCACGGAGGACA
ATCACATTTCCCGTCCGGTAAAGTGAAAGTATGTTCCATACAAATACATT
TCCCATCCGATGTCCAAACTTTGGGAAAGGGGCAATCCAATATTTTACGA
CGAGTGACATTGAAACAAGTTCCATCCGGATGAGGAAGCAAGCCTTTTTT
GCAAACACATTCACCATTTCGGTCTCTCTCTCTATCAAAGGGACATTCGC
ATTTACCATCTGAAGTAGAGACCATTCCTGGCCTACAAATACATCCGTCT
CCTTCTGAATTTTCAAACTGATCTTCCAAACACCGACAACCCCCATCAGA
TTGCGGTTCCATCCCTTGGTGACAAATACATTCTCCTTGGACAAGACGAC
GGCCAGGTGCACAAACGCAATCATCCCAGTTAATAGGCCACCATCCTTCC
TTGCAAACACAATCACCATTTCGGTCTCTCTCTCGATGAAAGGGACATTC
GCATTTACCATCTGAGGTAGAGACCATTCCTGGCCTACAAATACATCCGT
CTCCTTCTGAATTTACATGATCTACCGAACACCAACAACTCCCATCAGAT
TGCGGTTCCATCCCTTGGTGACAAATGCATTCTCCTTGGACAAGACGACG
GTCAGGTGCACAAACGCAATCATCCCAGTTAGTAGGCCACCATCCTTCCT
TACAAACACAATCACCGTTTTCGTTAGTCACAAAATCACATTTAcaaata
tcattttcatttcCATCGTTTCTTTGAAGTTTAGTACGTTCCTTACAAAA
ACCACATTTGCCATCGATTAACGCTTGACCTGTTCCACATAACTTTCGCT
CACAATAACGATGTAAACCATGGCGTATTTCTTGATTAACACCGCATTCT
TTAAAGTCGTTTAAATCAATTACTCTATCCCAGCTTTGTCCTTGCCCTCC
AGGAGTTCCACCAGGCGAGCAACTTGTTACATCAACAGAGCTTGGNGGTC
TTTCCCCTCCAGGAGGTCCACCAGGCGAGCAACTTGTTACATCAACAGAG
CTTGGTAGGCTATTCAAACATTTGGAGCAAAAAGGATTTTTAACGAGTTC
GTTTTCTGATAGTTGAAAGTTTGCAGCAACAAGCCGACATAAGGTGGCAT
CTAACTGGTTGCATGTTTTTTTATcacatttgaaaactgaatcCGATTTC
ACATTGTCTGAGACCATTGTGTAGCAATCGTTCAATTTCAAAAGTTCAAT
GGCAGTATACTTGTAAATTTTGTACGCCGAATAACAAACTACATCAACAA
AATCCCTGTCATAATTTGAAACATTGTTACAGTAAgcgcaaaacttgttt
ttatatAGGTATTTGTCATTCCCGAGAACTGGCATTTGATCAACTTGCTC
ATTGGAAGAACTGTTTATACAATGTTCAATGTCAATTTCATTTGCACCAG
GAAGACATGAATCCACCATGATGTAATATTCGAGAATCTCCTCTTCAAAC
GGGAATAACGGTAAACAATGTTGCAATTTCGACGATTTAATCACTTTTTG
TTGGtaatcattgacattttgaGCAATACTTTGATTATTGAATGCGAATT
GGTTCCATAGATAGTCAATACAACAATCACCAGAGCTTTGGCAACCAGCA
TTGCATCGGCATTCACCTTTCTGTAACCAGCGTTGACATTGGAATCCAGT
CCATTGTATTGCAGAAGAGTTGATTCCACTTGCGTCTAAGAAATCCGATA
ATGGAAAAGGTTTTTCATTGGGTGTAAGTGCGATTTCAGTGATATTCCAT
TTTTGGCAATCCTCCTGCATCGACACTTCTTGCCAAACCAATAGCATCGA
AATGACGATGAGATACAAGCTCATATTTTTCTATACCTc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060621-exon-scaffold_348-1491911889:11453..13496 | TCONS_00060621-exon-scaffold_348-1491911889:11453..13496 | Clytia hemisphaerica | exon |
| TCONS_00060621-exon-scaffold_348-1510915933:11453..13496 | TCONS_00060621-exon-scaffold_348-1510915933:11453..13496 | Clytia hemisphaerica | exon |
| TCONS_00060621-exon-scaffold_348-1575043694:11453..13496 | TCONS_00060621-exon-scaffold_348-1575043694:11453..13496 | Clytia hemisphaerica | exon |
| TCONS_00060621-exon-scaffold_348-1491911889:13749..14189 | TCONS_00060621-exon-scaffold_348-1491911889:13749..14189 | Clytia hemisphaerica | exon |
| TCONS_00060621-exon-scaffold_348-1510915933:13749..14189 | TCONS_00060621-exon-scaffold_348-1510915933:13749..14189 | Clytia hemisphaerica | exon |
| TCONS_00060621-exon-scaffold_348-1575043694:13749..14189 | TCONS_00060621-exon-scaffold_348-1575043694:13749..14189 | Clytia hemisphaerica | exon |
| TCONS_00060621-exon-scaffold_348-1491911889:14250..15141 | TCONS_00060621-exon-scaffold_348-1491911889:14250..15141 | Clytia hemisphaerica | exon |
| TCONS_00060621-exon-scaffold_348-1510915933:14250..15141 | TCONS_00060621-exon-scaffold_348-1510915933:14250..15141 | Clytia hemisphaerica | exon |
| TCONS_00060621-exon-scaffold_348-1575043694:14250..15141 | TCONS_00060621-exon-scaffold_348-1575043694:14250..15141 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_348 | supercontig | scaffold_348:11453..15141 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
| GO:0004888 | transmembrane signaling receptor activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
| GO:0007166 | cell surface receptor signaling pathway |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007166 |
cell surface receptor signaling pathway |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
| molecular_function |
GO:0004888 |
transmembrane signaling receptor activity |
Blast
The following BLAST results are available for this feature:
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