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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060620 ID=TCONS_00060620|Name=TCONS_00060620|organism=Clytia hemisphaerica|type=transcript|length=3868bp
ATACGGTTGCGTCGGAAGtactaaaatcaggctattcaGAGAAAAACAAG
GAGCAGGGATGATAGTTAAAATAATTTAAGATCGTCAACTTTTACACATT
TTTGGGGCAATTTTCATAAACTAGTGAAAAGGTGGGTCTTTatgatcaaa
aattaaaataataactagattttaaatgaataaaaagaaacaaaacccGA
TTTAATTTGAAACTGTTGAAGTTTCAGTTTTAACTGTTAGCTCATAGTGT
TCGAAGATTTTCGTAAAATGTTCTTTGAGTAATTTCATAGTCCTTCGATT
GACcatataaacaataaaaatcaTTACACCACGAAACGCCCTCAACAAAA
TATACAGTAGCCCGAATACcgaattgaaaatttcttcattttctctcAAA
TGGTCACTTTTAATTTGAATCAGTCCAAATAATTCGGTTATTCCCAAAAC
GAGCATTAATTTGATCCCAATTTTCAGCAAATCGGTATCCTTTTTCGTAT
CTTTNGATTTGAATCAATCCAAATAATTCGGTTATTCCCAAAACGAGCAT
TAATTTGATCCCAATTTTCAGCAAATCGGTATCCTTTTTCGTATCTTTGT
TTAGAGTGCGCTCGACCTCTGATTTTCTTCTACGGATCGATGCCAAAACA
ATACAAAGACAAACAAAGCAAAGCACATAACCAATGATTGCCGGGATGAA
ATAAAATCCAAGTGAAAGATAAAAATCTCCAAACCAACATCGATTTTCga
aatgaaaatcaaatgtGTTCGATTCTTCTAATCCAATGATCGCCAATAAA
ATGattaaagaaatgaaaactgTTATTCCCGATCTTTTACGCAAAATATA
AATGGATTCGTGAAGAGATAATGGTCTTGAAAGTTTCTTGGTAAATTGCA
ACGTGATATCAATTGCTACGATGACGctccaaaacaaaacattcaacATA
GACCAGTAAAAGATCATACCAAACCATTTACAGGTTGTTGTTTGTGTTTC
AATGTAAGAAGTTACGAGAAATAAAATATCACTTGTCATCAGGAAAATCA
CCAAGATCATCACACAGTAGGCACCTCTATTTCGAATGGCTGCAACTTTA
GCAAAAACGACAAGAAAAATGACGTAACATATAAGACTTAGTATTGTCCC
GATGAGTGAAATATAAGATTTGGCATCATCGACAGGCTTTACCCAAGAGT
ATTGTTGGAACTTGTAATCCTCCGACTTGTCAACTCGGCATATCTGGAAT
CCTCTCTCTAAAGGTGTATATTCACCAGCATTGTAGCTTTGAAGGTTTTC
CCGTTCAGAATTCCAAATATTAAGAGAACCATTACTTGAAATGTTATAGT
TTGAGGGATTAATGTTTTTCCGGCCACACGTTGAATACAAATGAAACTGT
TCACAAGAATAGATTTCCTCACGAATTTCACCTTTCTCAAAGGTTATTAT
GATGTTAACAGAAGCGTTTCTCGATTCTTGCAAGCTGGCAATAGCTTGAT
TACAGTCCTGTTCAGGTTTAATGGTAATTTTGTTATATTTGGCACATAAT
TTGAACCGATCGAAAGTTCTGATCACATCGTAACCATACAGATGAGTGAA
AAGATGATTCTTCTGACTGGTGACCACAGCTTTGGTGATGTTTGGATTAG
ATTGTGTTTCCTGAAGAAGCTTTTCCTTCCAGTTTGGATTATTCCTAAAA
TCTGTCGATTGAAGAACGAATAAGTCTTTCGGCAATATCCATTTGAGTTT
CAAGAGATTAAAAAATGCCGGAATACTCGAATTACTATTTTCGTTCATGA
AAACATACAGCGTTAGACGAGGAAGCTGCGTGATACATCTCAATTCTGTA
ACGAAAGCTTGGAATCTGTTTGGAGCACATTTATTTTCTTccaaatttga
ttgaaaaccAGGGTCACAAGTGCACACGTCTTTCGAGTCCTTCCGACGCG
AGCTTCCAGAGGGGCAATTACAATATCCATTATTCTTATGTCCCAATAAA
CAAGTACACGATGAGGGACGCTCAAGAGAATTGATTGTGCCAGCGTTACA
AACACAATTACCATTATTCCAATGACGCCACGGAGGACAATCACATTTCC
CGTCCGGTAAAGTGAAAGTATGTTCCATACAAATACATTTCCCATCCGAT
GTCCAAACTTTGGGAAAGGGGCAATCCAATATTTTACGACGAGTGACATT
GAAACAAGTTCCATCCGGATGAGGAAGCAAGCCTTTTTTGCAAACACATT
CACCATTTCGGTCTCTCTCTCTATCAAAGGGACATTCGCATTTACCATCT
GAAGTAGAGACCATTCCTGGCCTACAAATACATCCGTCTCCTTCTGAATT
TTCAAACTGATCTTCCAAACACCGACAACCCCCATCAGATTGCGGTTCCA
TCCCTTGGTGACAAATACATTCTCCTTGGACAAGACGACGGCCAGGTGCA
CAAACGCAATCATCCCAGTTAATAGGCCACCATCCTTCCTTGCAAACACA
ATCACCATTTCGGTCTCTCTCTCGATGAAAGGGACATTCGCATTTACCAT
CTGAGGTAGAGACCATTCCTGGCCTACAAATACATCCGTCTCCTTCTGAA
TTTACATGATCTACCGAACACCAACAACTCCCATCAGATTGCGGTTCCAT
CCCTTGGTGACAAATGCATTCTCCTTGGACAAGACGACGGTCAGGTGCAC
AAACGCAATCATCCCAGTTAGTAGGCCACCATCCTTCCTTACAAACACAA
TCACCGTTTTCGTTAGTCACAAAATCACATTTAcaaatatcattttcatt
tcCATCGTTTCTTTGAAGTTTAGTACGTTCCTTACAAAAACCACATTTGC
CATCGATTAACGCTTGACCTGTTCCACATAACTTTCGCTCACAATAACGA
TGTAAACCATGGCGTATTTCTTGATTAACACCGCATTCTTTAAAGTCGTT
TAAATCAATTACTCTATCCCAGCTTTGTCTTTCCCCTCCAGGAGGTCCAC
CAGGCGAGCAACTTGTTACATCAACAGAGCTTGGTAGGCTATTCAAACAT
TTGGAGCAAAAAGGATTTTTAACGAGTTCGTTTTCTGATAGTTGAAAGTT
TGCAGCAACAAGCCGACATAAGGTGGCATCTAACTGGTTGCATGTTTTTT
TATcacatttgaaaactgaatcCGATTTCACATTGTCTGAGACCATTGTG
TAGCAATCGTTCAATTTCAAAAGTTCAATGGCAGTATACTTGTAAATTTT
GTACGCCGAATAACAAACTACATCAACAAAATCCCTGTCATAATTTGAAA
CATTGTTACAGTAAgcgcaaaacttgtttttatatAGGTATTTGTCATTC
CCGAGAACTGGCATTTGATCAACTTGCTCATTGGAAGAACTGTTTATACA
ATGTTCAATGTCAATTTCATTTGCACCAGGAAGACATGAATCCACCATGA
TGTAATATTCGAGAATCTCCTCTTCAAACGGGAATAACGGTAAACAATGT
TGCAATTTCGACGATTTAATCACTTTTTGTTGGtaatcattgacattttg
aGCAATACTTTGATTATTGAATGCGAATTGGTTCCATAGATAGTCAATAC
AACAATCACCAGAGCTTTGGCAACCAGCATTGCATCGGCATTCACCTTTC
TGTAACCAGCGTTGACATTGGAATCCAGTCCATTGTATTGCAGAAGAGTT
GATTCCACTTGCGTCTAAGAAATCCGATAATGGAAAAGGTTTTTCATTGG
GTGTAAGTGCGATTTCAGTGATATTCCATTTTTGGCAATCCTCCTGCATC
GACACTTCTTGCCAAACCAATAGCATCGAAATGACGATGAGATACAAGCT
CATATTTTTCTATACCTc Run BLAST on NCBI transcript from alignment at scaffold_348:11214..15141+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060620 ID=TCONS_00060620|Name=TCONS_00060620|organism=Clytia hemisphaerica|type=transcript|length=3928bp|location=Sequence derived from alignment at scaffold_348:11214..15141+ (Clytia hemisphaerica)
ATACGGTTGCGTCGGAAGtactaaaatcaggctattcaGAGAAAAACAAG
GAGCAGGGATGATAGTTAAAATAATTTAAGATCGTCAACTTTTACACATT
TTTGGGGCAATTTTCATAAACTAGTGAAAAGGTGGGTCTTTatgatcaaa
aattaaaataataactagattttaaatgaataaaaagaaacaaaacccGA
TTTAATTTGAAACTGTTGAAGTTTCAGTTTTAACTGTTAGCTCATAGTGT
TCGAAGATTTTCGTAAAATGTTCTTTGAGTAATTTCATAGTCCTTCGATT
GACcatataaacaataaaaatcaTTACACCACGAAACGCCCTCAACAAAA
TATACAGTAGCCCGAATACcgaattgaaaatttcttcattttctctcAAA
TGGTCACTTTTAATTTGAATCAGTCCAAATAATTCGGTTATTCCCAAAAC
GAGCATTAATTTGATCCCAATTTTCAGCAAATCGGTATCCTTTTTCGTAT
CTTTNGATTTGAATCAATCCAAATAATTCGGTTATTCCCAAAACGAGCAT
TAATTTGATCCCAATTTTCAGCAAATCGGTATCCTTTTTCGTATCTTTGT
TTAGAGTGCGCTCGACCTCTGATTTTCTTCTACGGATCGATGCCAAAACA
ATACAAAGACAAACAAAGCAAAGCACATAACCAATGATTGCCGGGATGAA
ATAAAATCCAAGTGAAAGATAAAAATCTCCAAACCAACATCGATTTTCga
aatgaaaatcaaatgtGTTCGATTCTTCTAATCCAATGATCGCCAATAAA
ATGattaaagaaatgaaaactgTTATTCCCGATCTTTTACGCAAAATATA
AATGGATTCGTGAAGAGATAATGGTCTTGAAAGTTTCTTGGTAAATTGCA
ACGTGATATCAATTGCTACGATGACGctccaaaacaaaacattcaacATA
GACCAGTAAAAGATCATACCAAACCATTTACAGGTTGTTGTTTGTGTTTC
AATGTAAGAAGTTACGAGAAATAAAATATCACTTGTCATCAGGAAAATCA
CCAAGATCATCACACAGTAGGCACCTCTATTTCGAATGGCTGCAACTTTA
GCAAAAACGACAAGAAAAATGACGTAACATATAAGACTTAGTATTGTCCC
GATGAGTGAAATATAAGATTTGGCATCATCGACAGGCTTTACCCAAGAGT
ATTGTTGGAACTTGTAATCCTCCGACTTGTCAACTCGGCATATCTGGAAT
CCTCTCTCTAAAGGTGTATATTCACCAGCATTGTAGCTTTGAAGGTTTTC
CCGTTCAGAATTCCAAATATTAAGAGAACCATTACTTGAAATGTTATAGT
TTGAGGGATTAATGTTTTTCCGGCCACACGTTGAATACAAATGAAACTGT
TCACAAGAATAGATTTCCTCACGAATTTCACCTTTCTCAAAGGTTATTAT
GATGTTAACAGAAGCGTTTCTCGATTCTTGCAAGCTGGCAATAGCTTGAT
TACAGTCCTGTTCAGGTTTAATGGTAATTTTGTTATATTTGGCACATAAT
TTGAACCGATCGAAAGTTCTGATCACATCGTAACCATACAGATGAGTGAA
AAGATGATTCTTCTGACTGGTGACCACAGCTTTGGTGATGTTTGGATTAG
ATTGTGTTTCCTGAAGAAGCTTTTCCTTCCAGTTTGGATTATTCCTAAAA
TCTGTCGATTGAAGAACGAATAAGTCTTTCGGCAATATCCATTTGAGTTT
CAAGAGATTAAAAAATGCCGGAATACTCGAATTACTATTTTCGTTCATGA
AAACATACAGCGTTAGACGAGGAAGCTGCGTGATACATCTCAATTCTGTA
ACGAAAGCTTGGAATCTGTTTGGAGCACATTTATTTTCTTccaaatttga
ttgaaaaccAGGGTCACAAGTGCACACGTCTTTCGAGTCCTTCCGACGCG
AGCTTCCAGAGGGGCAATTACAATATCCATTATTCTTATGTCCCAATAAA
CAAGTACACGATGAGGGACGCTCAAGAGAATTGATTGTGCCAGCGTTACA
AACACAATTACCATTATTCCAATGACGCCACGGAGGACAATCACATTTCC
CGTCCGGTAAAGTGAAAGTATGTTCCATACAAATACATTTCCCATCCGAT
GTCCAAACTTTGGGAAAGGGGCAATCCAATATTTTACGACGAGTGACATT
GAAACAAGTTCCATCCGGATGAGGAAGCAAGCCTTTTTTGCAAACACATT
CACCATTTCGGTCTCTCTCTCTATCAAAGGGACATTCGCATTTACCATCT
GAAGTAGAGACCATTCCTGGCCTACAAATACATCCGTCTCCTTCTGAATT
TTCAAACTGATCTTCCAAACACCGACAACCCCCATCAGATTGCGGTTCCA
TCCCTTGGTGACAAATACATTCTCCTTGGACAAGACGACGGCCAGGTGCA
CAAACGCAATCATCCCAGTTAATAGGCCACCATCCTTCCTTGCAAACACA
ATCACCATTTCGGTCTCTCTCTCGATGAAAGGGACATTCGCATTTACCAT
CTGAGGTAGAGACCATTCCTGGCCTACAAATACATCCGTCTCCTTCTGAA
TTTACATGATCTACCGAACACCAACAACTCCCATCAGATTGCGGTTCCAT
CCCTTGGTGACAAATGCATTCTCCTTGGACAAGACGACGGTCAGGTGCAC
AAACGCAATCATCCCAGTTAGTAGGCCACCATCCTTCCTTACAAACACAA
TCACCGTTTTCGTTAGTCACAAAATCACATTTAcaaatatcattttcatt
tcCATCGTTTCTTTGAAGTTTAGTACGTTCCTTACAAAAACCACATTTGC
CATCGATTAACGCTTGACCTGTTCCACATAACTTTCGCTCACAATAACGA
TGTAAACCATGGCGTATTTCTTGATTAACACCGCATTCTTTAAAGTCGTT
TAAATCAATTACTCTATCCCAGCTTTGTCCTTGCCCTCCAGGAGTTCCAC
CAGGCGAGCAACTTGTTACATCAACAGAGCTTGGNGGTCTTTCCCCTCCA
GGAGGTCCACCAGGCGAGCAACTTGTTACATCAACAGAGCTTGGTAGGCT
ATTCAAACATTTGGAGCAAAAAGGATTTTTAACGAGTTCGTTTTCTGATA
GTTGAAAGTTTGCAGCAACAAGCCGACATAAGGTGGCATCTAACTGGTTG
CATGTTTTTTTATcacatttgaaaactgaatcCGATTTCACATTGTCTGA
GACCATTGTGTAGCAATCGTTCAATTTCAAAAGTTCAATGGCAGTATACT
TGTAAATTTTGTACGCCGAATAACAAACTACATCAACAAAATCCCTGTCA
TAATTTGAAACATTGTTACAGTAAgcgcaaaacttgtttttatatAGGTA
TTTGTCATTCCCGAGAACTGGCATTTGATCAACTTGCTCATTGGAAGAAC
TGTTTATACAATGTTCAATGTCAATTTCATTTGCACCAGGAAGACATGAA
TCCACCATGATGTAATATTCGAGAATCTCCTCTTCAAACGGGAATAACGG
TAAACAATGTTGCAATTTCGACGATTTAATCACTTTTTGTTGGtaatcat
tgacattttgaGCAATACTTTGATTATTGAATGCGAATTGGTTCCATAGA
TAGTCAATACAACAATCACCAGAGCTTTGGCAACCAGCATTGCATCGGCA
TTCACCTTTCTGTAACCAGCGTTGACATTGGAATCCAGTCCATTGTATTG
CAGAAGAGTTGATTCCACTTGCGTCTAAGAAATCCGATAATGGAAAAGGT
TTTTCATTGGGTGTAAGTGCGATTTCAGTGATATTCCATTTTTGGCAATC
CTCCTGCATCGACACTTCTTGCCAAACCAATAGCATCGAAATGACGATGA
GATACAAGCTCATATTTTTCTATACCTc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060620-exon-scaffold_348-1491911889:11214..14189 | TCONS_00060620-exon-scaffold_348-1491911889:11214..14189 | Clytia hemisphaerica | exon |
| TCONS_00060620-exon-scaffold_348-1510915933:11214..14189 | TCONS_00060620-exon-scaffold_348-1510915933:11214..14189 | Clytia hemisphaerica | exon |
| TCONS_00060620-exon-scaffold_348-1575043694:11214..14189 | TCONS_00060620-exon-scaffold_348-1575043694:11214..14189 | Clytia hemisphaerica | exon |
| TCONS_00060620-exon-scaffold_348-1491911889:14250..15141 | TCONS_00060620-exon-scaffold_348-1491911889:14250..15141 | Clytia hemisphaerica | exon |
| TCONS_00060620-exon-scaffold_348-1510915933:14250..15141 | TCONS_00060620-exon-scaffold_348-1510915933:14250..15141 | Clytia hemisphaerica | exon |
| TCONS_00060620-exon-scaffold_348-1575043694:14250..15141 | TCONS_00060620-exon-scaffold_348-1575043694:14250..15141 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_348 | supercontig | scaffold_348:11214..15141 + |
Blast
BLAST of TCONS_00060620 vs. Swiss-Prot (Human)
Match: TENX (Tenascin-X OS=Homo sapiens GN=TNXB PE=1 SV=4) HSP 1 Score: 89.7373 bits (221), Expect = 1.055e-17 Identity = 101/333 (30.33%), Postives = 124/333 (37.24%), Query Frame = -1
Query: 1904 GDCVCKEGW------WPTNWDDCVCAPDRRLVQGECICHQGMEPQ--SDGSC--WCSVDHVNSEGDGCICRPGMVSTSDGKCECP---FHRERDRNGDCVCKEGWWPINWDDC-------VCAPGRRLVQGECICHQGMEPQSDGGCRCLEDQFENSEG-DG-CICRPGMVSTSDGKCECPFD---RERDRNGECVCKKGLLPHPDGTCFNVTRRKILDCPFPKVWTSDGKCICME-HTFTLPDGKC---DCPPWRHWNNGNCVCNAG------TINSLE---------RPSSCTCLLGH--KNNGYCNCPS---GSSRRKDSKDVCTCDPGF 2755
G CVC G+ WP+ DC R VQG C+C G S SC CS EG C+C PG G CP R R NG CVC G+ +DC C+ R G C+C G + G C D E DG C+C PG CP D R R +GEC+C G G R DC + DG+C+C +T T + DC NG CVCNAG + S C C G+ ++ G CP G R D + C C+PGF
Sbjct: 200 GRCVCFPGYTGPSCGWPSCPGDC--QGRGRCVQGVCVCRAGFSGPDCSQRSCPRGCS-QRGRCEGGRCVCDPGYTGDDCGMRSCPRGCSQRGRCENGRCVCNPGY---TGEDCGVRSCPRGCSQRGRCKDGRCVCDPGYTGEDCGTRSCPWDCGEGGRCVDGRCVCWPGYTGEDCSTRTCPRDCRGRGRCEDGECICDTGYSGDDCG-----VRSCPGDCN-QRGRCEDGRCVCWPGYTGTDCGSRACPRDCRGRGRCENGVCVCNAGYSGEDCGVRSCPGDCRGRGRCESGRCMCWPGYTGRDCGTRACPGDCRGRGRCVDGR--CVCNPGF 518
The following BLAST results are available for this feature:
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