TCONS_00060602 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060602
Unique NameTCONS_00060602
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length826

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060602 ID=TCONS_00060602|Name=TCONS_00060602|organism=Clytia hemisphaerica|type=transcript|length=826bp
AGGGTATAGCGCATCGAGCGCGAAGAGTCATAAAGCCTGATAAAGCGCCA
TATTTCTTTGGATCTCATTTGTCTGCTTGTGGACTTTTCACTGCAAGGCc
aagccaaaaaaaattaatcgattATAAGTCATGGATGGTCCTATGTCTcc
aaagaaagaaaagtctGATCCTTTATCACCTGCAGTATCAACAGAACCAA
AAAATGTGCAAGATCTCACTGTATTTgttGAAAACTTGCTGAGCACAATG
cAAGATAAATTTCAAGCAATGTCGGATCAAATATTGACAAGAATGGATGA
CATGGGTGGACGAATTGACGAACTGGAAAAGAACATAGGTGATCTTATGC
AACAAGCTGGCATCGAAGATGAACCtgctaaaaagTTGTTGTTTTTATCC
GAGGTTACTagctcttatttgattatttttggaTAAAAAGATTGTCCATA
AAATGGCAAAGTGCTTCTTCAGTGTTTTTATTGCAATTATTTTGCTCGTT
CAAGTTTTCCATCAAGCTGAGTCCAAAGaaatggaaattttggaaaagtt
tATGAAAGACATGGAAAACAAAATTACGAAAGAAAAAGTTCAAATGGAAA
AAGCTGCTGTTCCAATGACTTTGAAAATGtGTCTTCAAAATTATAAAGTG
TGTATCGAATCTCGAGGTGTGAACAAATGCAGTATTGATTTTAATGATTG
CTGCGAAAAGATCAAGAACTGATTGGTACATCCTGCCAATAAAGAATATC
ATATTAATTGAAGAAAACTTCTTACTTGTAAACAAAATGTTGGCATTTTA
TTTCAAAGAACttcctttccaaaaat
Run BLAST on NCBI

protein sequence of TCONS_00060602-protein

>TCONS_00060602-protein ID=TCONS_00060602-protein|Name=TCONS_00060602-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
MDGPMSPKKEKSDPLSPAVSTEPKNVQDLTVFVENLLSTMQDKFQAMSDQ
ILTRMDDMGGRIDELEKNIGDLMQQAGIEDEPAKKLLFLSEVTSSYLIIF
G
Run BLAST on NCBI

transcript from alignment at scaffold_345:191918..200880-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060602 ID=TCONS_00060602|Name=TCONS_00060602|organism=Clytia hemisphaerica|type=transcript|length=8963bp|location=Sequence derived from alignment at scaffold_345:191918..200880- (Clytia hemisphaerica)
AGGGTATAGCGCATCGAGCGCGAAGAGTCATAAAGCCTGATAAAGCGCCA
TATTTCTTTGGATCTCATTTGTCTGCTTGTGGACTTTTCACTGCAAGGCC
AAGCCAAAAAAAATTAATCGATTATAAGTCATGGATGGTCCTATGTCTCC
AAAGAAAGAAAAGTCTGATCCTTTATCACCTGCAGTATCAACAGAACCAA
AAAATGTGCAAGATCTCACTGTATTTGTAAGTTTATATACATGTTTTATT
GTGTGGCGAGGAGGTTGCAACTTAACTTTTCCATTTCTATCTTCTATTAT
TCACTTTGTTTATGTTTTTCTTTATCTTCCCACAAGCTCTAGAATTTCTA
AAGGGCTAATCAAAGCTTGCTTGAGATCTCTATGTTCAGACAGTGTCAAT
CAAACAACTTCGAACAAAAATCGCAATCGAACGTAAAATCGAACGGTTGT
GGCTTCTTCACAAAGACGAAAGACAGATCTGAACTATTTCGTACTTTCCA
GTCTGTTGTTCGTAGTTTTCTGACTTTCTGGTTCTTTGTGAGTTATTTTC
TATGTCTACTAACTCACCGTAGAGTTGTTTAATATCGACATATCTGTAGG
CTGGTCTTCGAAATAAAAAATCTAACATAAACAAATACATACCAAAGTTA
TCAATCAATCACTAAATTGTTCTCTCTCTCTATCCACGTCACAGATTGTT
AATATAATATGAGAAATGTGAACNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNATAAGAATGATACCAAGAATTTCATTCAAGGTTTGTT
TTGATTATTTTACAGATCCGGTGTCGAGATTGCAAGACGTATGTCGAGAT
TAGACGACTCTACGGTACTGAATGACTTACCGACAGATCACCACCGGTGT
GATTTGAACCCACTAAATGCAAAGTTCTGATATTCTGAAACCCATTGTCT
TATCCACTGCGCCACGGATTCATGCCAGGATAGCGCTTCTGACGGCTATT
TATATTGTACAAACTGCAGACCAGACTGTATTAAGAGAAAGTCACAAAAG
AGTGCTTGTTTCGAGCTCTAACCCTAACCCTAAAACTGATAATAACCCAA
TTCCTAGCCAATCTGATACGTAACCACACCCAAACCACACCCATACCCAA
CCCTACCAGGTTGCTTGCAGGTCCTGACACTATTCCCGTATACCGGATCC
GAAAAATAGATACATGTCTTTCGTCTTTATGAAGAAGCTTTCACCTAATC
GAACGCGATCGAATAATTGCGATTCGATTGTCAAACGTAATCAAATCTCA
ATCAAACTGTTTGAGTAAGGTTAGATTGATAGTTGACTATGTTCAATTCT
GGTTCGATTGGTTTGATTGATTGTCAATTACCATGAGATTGGCTGGGTAA
CTTGCATCAGTGGAGGCTAACATGCATAGCCCTCAAATAAATGACCTGAC
TGGTCATTAAAATACAACTACGCAGCTCCGCTCGCAGCTCTACTCTACCA
TTTTTGTTTTGATTTAACTTGTATTTTAATGACCAGCTAGGTCATTTATT
TGAGGGCTATGCATGTTAGCCTCCACTGATGCAAGTTACCTAAGCTACCG
AAGTAAGTATCACCTTTTCACCTTTCCATCCGCAATCTTGAATTGTATGC
AAAAATAGAGGAAGGAAAAAGCTGTGGTTGGATTTAGTTGGAAAGTATGC
AAAACATATGCAAGTTTACACAAAGATTAAAAAGACAACAAAGCATCTTA
TAAAGAAATATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNATTTCTTAATCCAAAAAGAAATATTTACAGAACAAC
AAAAGCCTTTTAGAAATTTGTTCTTAAAGACATAGCATATTCTGTTTTCA
TGCCATTAAAAAAATTCCACAAAGGTAGAGTACACACATCAAACTTTCAA
AACACGCAAACTGAAAGCAGTAATTATGACATCACACATAATCAATGTTT
TGATTTGATCATTTGGTGACTCTATTCCCAGGAGAATAATTTGCCGTCAG
CCGAATAAGGATTGTTTTTTTACCCTTGCTAGTGATTTTTCAGCTTGAGT
TTAATGTCTAAAAGAGATGAGGGAATATAATTATTTTTAGCTTTTAAGAC
TTTTAAGAGAAGCAAATTTAATCTTTCTTCTACAATTCAAGATGGTGGAT
GGAAAGGCGAAAAGGTCTATTGATTTTTCTGGTGAAAATTTCTTTGCCAC
GAAAGAACGTCAACAAATTATCCCCCAACCCCCCCCCCCCCCCCCCTAAA
CGTCCATTTTCCACGGCAAGTCTGAGTTTGGAAGGTTCCCCTTACAGCCC
CTTGGATATGAAACAACCTAACCTAGGAAACACTTTGTGAAAGCTAAAAG
ATTTTGTGTCTGCACCAAAAAGTGCAAAACTTCAATTTCTATCCATTTAT
TTGCATAAGACTAAAAAGCTAAAATCAAAAATATTTAACAAAAACTTGTC
TATAAAAATAAAAAGTATATAAAAAAGGAAGTTAAGAATATTATACAATA
ATTAATAGTAATAAATAGTAAAAAAGTAGAAAATAGTAAAACATATTGAA
TAAATAGTTTATTAGTTGACTGACCCTCTGGACACGTGTTTTGACCCTGC
TAAAGCATCAAATTGAACCATAGGGCACTAAAATTTACACCTGCACATTT
CAATTTTATCCCACGGATATGAGCAGTTTTTCATGACTTTTCAAATAAAT
ACCCCTGGACAGTAAATATATCTTCCACCATGTATATACAGTCTTTTTCT
GGGGGTGAGCTTCCTTAAATGTCTATTACCTTCATGAGACTAATTTCGAG
GAGAAATAACTGAGTGTTTTAGCAGGCAAAATTTAAGGGTTATTTTAGGA
AATGATGGAAAAACTTAATAAGATGAGTAATAACTTATTTTGGCAAGGCA
GCATTTTTGTTATTTTTGGTAAGAAATAATTTTCAAATTCACCAAAATAG
GCCAAAGGGTAATCAACATATCAAATATATATTATTTCTTTTTTAGGTTG
AAAACTTGCTGAGCACAATGGTAATTACACTTGCAAATTGATCAGCATCT
CTCTGCCATGCCTCCTTGCTACTGTTGGGAATCCATTGACTTAAAAAAAT
GTCTCAATTAAAGCCTAGAATTAGTGCAATTGAATATTTGGCATGAAATT
AAGGAAATAATGCAAATTATTCCTGGTTACTTACTCAATTACTTTTTTGC
TTTTTGGCCTTTGTGTATGGCGCGCCAAAAGAGTTTTTAATACCAACTTT
TTTTTTCGATAGCAACTTTTTTCTTGATGTCAACTTTTTTTTAGATATCA
ACTTTTTAATGTCTCTATTTACTCGCTTTCATTATTTTGCAATGTAGAGA
GAGGCTTATAATACGCATGCGCAAAAATACATTGCGCGCGTGTTTGATCT
AAAATTGTCAACAACATGCAGCTCTTGATGCTCTACGGATTCCATGCATG
CGCTTCCGCACCATCTCCTTCGTTCTTGTATTTTATTAAGGGTCCCTTTA
CACTAATGGTTCTCATCGAGGCAAAAGTTTGTATTGTACAACTTTGGTAT
TATAATAAAAATGTTGGTGTTAAAAAAAAGTTGGTATTAAAAAAAAAAGT
TGGTATTAAAAAAAAAGTTGGTATCGAAAATAAAAAGTTGGTATTGAAAA
AAAAAGTTGGTGTCGAAAGAAAAATTTGGTATTGAAAAAAAAGTTGTCAT
ATAAACCTTTTTGGCGCGCCATATTTGTGCAGCTTCTTTTTATACATTTC
TTTGCTCACAAATATTTTATGGATTATTTCTATTTTGTTTCATTTTAGCA
AGATAAATTTCAAGCAATGTCGGATCAAATATTGACAAGAAATATCCTTT
TCATCATTTTGCTTCTACTTACAACGTCGTAAAATCATGACTTCTTCTAG
AGTTTTAAAACATCTGGGGAAGAATGTCCCTGGTTATTCCCCAAAGCACA
CCCTTTTTAAAATTCCCTTTTTTGATGGCATATCTTTGACCAATTAAACA
CTTCCAGCAGATAAAGTATTTTTCTACTTTAAAGAAGTGGTCTGGCAACA
AACTTTTCTTCGACACCCTGTATTTGTGTTAAGATTAAGTTAGTGTTTTT
GCGGGGTCATAAATATATTTTGTCAAAATTGAAGAATGGTAGTTTCAAAA
GCTAAATAGAAGATCTAATCGGAATAGTGAATAAGAAGGAAAATATTGAA
ATATATGTTTATGTAAAACCAATCTAAAAGTCACATGTTTTCTTTAACTG
ATATGTTTACTGGATGACATGGGTGGACGAATTGACGAACTGGAAAAGAA
CATAGGTGATCTTATGCAACAAGCTGGCATCGAAGATGAACCTGCTAAAA
AGTAAACAAACAAAAACATTTAACTAAATGGGATGGCACCACGAAACTTT
ACATACAGTTTTTGTTGTTCATATTTTTATACCTAACTAAAAACGGGGAA
TCCTTCAATCGAAATCTCAAGCTTAATTTGATGTTGCTTCTTTGTTGATG
AGCCTTTAAATTCGAAACATAGTCAAATAGACATTGTCGATGGATTGGGA
TTTTTTCTTGCCAGTTGAAACTAATAGACCTTTTCATAAATTACGTCACG
AACATCACTTGCCTCGTTTTGAAATTATTGCCAAGGTGATTACCTCCCAG
TGGATTTTATTAGAACTACTTTCTATTTATAAAGAAATCATTTGATGTCT
CAAGGGACATAATCACCATGGTAATTGTTTGAATACGAGGCAAGTGATGT
TCGTGACGTAATTTATGAAAAGGTCTATTTTAGGTTGTTTGAATTAATTT
ATTGATCCTGTTGTTATTTTTTATATAAATATTATACATAATATGTAAGT
AACTGATCGAAACATTAAATAATAGTGCCACTCTTTGACTTTTATAACAG
ACCCCATTATTTGAACTTTCCGAACCACTTTTCTGCTTTGCACAATTTTT
CAAAAACATAAGGTTGAGTAAGTTCGAGTAATCTGCCGAATTTATTAACT
CGAACTTTGGATTCCAATGTATGTTAAAAGTTCAAGTAATGTTCGAGTAA
GTTGGGGTTCTAGTAATTTGTTAACTCAAACTTTACTAGAATTAAAATAT
AATCAAAAGGAAATTTCTTATATTTAAGTTTTTAAAGCTATCGGTTAGCA
AATTACAGAAACACTCAAAATATATTTAGCTATCTTTTCAATTGTTAATT
TGGCCAATTGTAACTATTTTCTTTAGATATGTTTTTATGATATCGAATGA
ATATCTAAATCGTACTTCAAATATTCACTTTCAGCTTAACTTTCCTATAT
ATTTTAAATCTATTTCGTGCGTAATGATTGATAAAATGTAAGGATTTAAA
GACATTTAACTTAAAAAGTTTTGAAAACAAAAATTTCGGCAGTTTCAGGG
AATTTCGTAGTCTACACAATAGACAGATCCAGGCTTTTAGGCCTTACTTA
CGAAGAGTAGGAGTTTTACGCTTGAAACGAAGGAAGATATGACGTAGCCT
AGTAATTTCGATGATTGATAAAATTATCACAAGAATAGAACAATTAATGA
ATCTACAGTTTGAATGTAAATTTTCGTACAGGTACCATTTTATTACAAAG
CATATTTTCTAAATACCGTTGCTATGATACTTAGACTAGAATCGACTGGT
CGAATGGGGTTGATTTTCAGTTAACCTTCAGATCAACACAATAAATCTAT
ATTCAACTTCATGAAGAAAATTTTTGCATTTTTAGGTTGTTGTTTTTATC
CGAGGTTACTAGCTCTTATTTGATTATTTTTGGATAAAAAGATTGTCCAT
AAAATGGCAAAGTGCTTCTTCAGTGTTTTTATTGCAATTATTTTGCTCGT
TCAAGTTTTCCATCAAGCTGAGTCCAAAGGTAAGAATTTCGACATTTTAT
TTTGTTTACCTTTTAAGGAAGCTAATTTTGGCGAACTGCAACCTTTTAAT
TTTTATTTGCAAGGATTAATTTTGGTGATAGTCTAGTGGGCGAAATAACC
TTTTTTGCTTCAACCGCCTTTACAAGTAGTATAATGTGGGCTTCCATTGG
GCTTGAAATATTGCTGACTTTCCAGCGTTTTCGGCCCTTTTCTGCTAAGC
CAGCAAAATTTCAGATTCAAATCTCTAAAGATCTAGCCGTGGAAACCCTA
AAACCTATACCTCTATTCGATAGTACTATCTTCGAAACAAATCTGTTGAA
AGTAATTTTTCGTCAAAAATCTTCTCAAAAACGCTGTCGTCCGCGTAAAA
TTTGCATTTTTGAGAACGTATCGTCCATTTCTCGTGTCATAATTTTTGCA
CTGAAAATATCTTCGTTTTTTTTTCAAAAGATTTTATCTTTTATATTATT
CTACTTCAAAATATCTTCCCAATTGTTTAAACTCTTACTATTATAAATGT
GAGTTGAGAAATTGTTTAAAAAGTAAAGCACAAATGTGAGCACATTGATT
GCATTAAATTCGCCAAAAAGCTTAAAATTAAGAAATTCTCAAAAAAAAGT
GTTTATATTAGATTAGATAGCATTTGCTGACTAAATCTTGAAGAGCTTGT
CCAAAGTTGTATCGATTGAGATNGCTCACATTGCATTAAATTCGCCAAAA
AGCTTAAAATTAAGAAATTCTCAAAAAAAAGTGTTTATATTAGATTAGAT
AGCATTTGCTGACTAAATCTTGAAGAGCTTGTCCAAAGTTGTATCGATTG
AGATGAAAACTGGATTTAATTTATTTTATCTAGAAATGGAAATTTTGGAA
AAGTTTATGAAAGACATGGAAAACAAAATTACGAAAGAAAAAGTTCAAAT
GGAAAAAGCTGCTGTTCCAATGACTTTGAAAATGGTAAATATGTTAATTC
GACTCCATTCCCCGTGTTATTCTTCTTCTCAGTTGCATCTTTGAATCTTA
AAGATATCTTTCGTTACGGTATATTTTGTACACTTTTTTCGTTTATAAGA
CCTAAGAGGCTAAAATCCAGAAAAAATAAAAACAGTTTAACAATGCTGAG
CCTGAAATTACTCAATTTCAAGCAATTTTGGGTTCAAAGTAGTAAAAACT
GGGTATGATAAGCCTAAAATACCTCAATTTCATCCTATACTCCCAGGCAC
TTCACAAACAAAGAGTTTGGAATAATATAAGCGGGATGGGTGTAAAAAAT
CTCAAAACTTAATAAGTGGGAAGGGGGTTGGAATGAAAATGTCCTGGATG
GAAATCTTTTGAAAGGGGCTAATACAGCAGAATTAGGGCAAAAGATGGAA
CCTTCAAAAACATTTTCCCAAAAATCGCCAAAAATCAATAAGCGGGGGTG
GGGGGGGGGGGGGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAATAAAAA
TGTCCCGGGTGGAAAATTTTCGAAAAAATAATTAGCGGGGGCGAGAGTAA
ATAAGAACAATTTGAGGCTCAAAGTGCCAAAAAAATAAGGGAACAGCCGA
GCCTCAGCAAAATTTTACTGGTTCATAAAAAAAGTGTAAGTATTAGAAAT
CTGAATCCTGCTGAAGATTTCTACAAATATGGCTTTGTAAGGCGAGACCA
ATTTGATTTGTTGTTCTACAGACAGATCGTTAGGAAAATATGGGTCGGTC
GGTCGGTAAAATAAGAATAAATTTTTCATTTATCAGGGTTGATAAGGTAC
CGAGAAAATTTTCCAAAAAGTATCTGCAATCATGGTTGTAATATTTGAGA
AAAAAGGGAAATCCACCGGGAAGTTTTGAAACCACAGTCGATTTGTAAGT
GCTCTAGAGTAGGTTGGAAGGGTAGAGTTTTAACATGACACTTAAGATCT
GAGGATCCAAATGTTCAAAAATAGTCCAATAAGGCTCATAATATAGCCTG
GATGTCTATAAACCCGAGCCAAATTGAAACATCCGATTAAATTTGAGAGA
TGGCCCAAAATCGACTTTCTCGCCCGAACTTCAAATTTCGAAAACGAGGA
AATAAGCTTAATTCTCAATAGATTTCGACCATGGTTGTGGATCAAAAATT
CACTTTGTTTTTTATCTTCGATGAAGATCATAACAAAATTTTAGTGTATG
GAATGCTTTTTATGATTTTTCAATTTCTTGAATTAATTTTCAGGTTTATT
TAAGTTTAATTCTTACAAATAACTAGTGTGTAAAATATATTGTAGTGGAA
ATTCGATATTATTATTTTTTGATTTTAGCAAAAATAGGGTCCGGGCCCGT
AGAACAACAAATTAAATTGGTTTCGCCTAATCCATAATTGAAAAATCGAC
AATCCATGAAAAATCATGCTTTTGCCGCAGACTAAAAATAATTATGTATC
TTCTTTCTTCTTTCAGTGTCTTCAAAATTATAAAGTGTGTATCGAATCTC
GAGGTGTGAACAAATGCAGTATTGATTTTAATGATTGCTGCGAAAAGATC
AAGAACTGATTGGTACATCCTGCCAATAAAGAATATCATATTAATTGAAG
AAAACTTCTTACTTGTAAACAAAATGTTGGCATTTTATTTCAAAGAACTT
CCTTTCCAAAAAT

Coding sequence (CDS) from alignment at scaffold_345:191918..200880-

>TCONS_00060602 ID=TCONS_00060602|Name=TCONS_00060602|organism=Clytia hemisphaerica|type=CDS|length=1530bp|location=Sequence derived from alignment at scaffold_345:191918..200880- (Clytia hemisphaerica)
GTTGTTGTTTTTATCCGAGGTTACTAGCTCTTATTTGATTATTTTTGGAT
AATGGATGACATGGGTGGACGAATTGACGAACTGGAAAAGAACATAGGTG
ATCTTATGCAACAAGCTGGCATCGAAGATGAACCTGCTAAAAACAAGATA
AATTTCAAGCAATGTCGGATCAAATATTGACAAGAAGTTGAAAACTTGCT
GAGCACAATGATGGATGGTCCTATGTCTCCAAAGAAAGAAAAGTCTGATC
CTTTATCACCTGCAGTATCAACAGAACCAAAAAATGTGCAAGATCTCACT
GTATTTGTTGTTGTTTTTATCCGAGGTTACTAGCTCTTATTTGATTATTT
TTGGATAATGGATGACATGGGTGGACGAATTGACGAACTGGAAAAGAACA
TAGGTGATCTTATGCAACAAGCTGGCATCGAAGATGAACCTGCTAAAAAC
AAGATAAATTTCAAGCAATGTCGGATCAAATATTGACAAGAAGTTGAAAA
CTTGCTGAGCACAATGATGGATGGTCCTATGTCTCCAAAGAAAGAAAAGT
CTGATCCTTTATCACCTGCAGTATCAACAGAACCAAAAAATGTGCAAGAT
CTCACTGTATTTGTTGTTGTTTTTATCCGAGGTTACTAGCTCTTATTTGA
TTATTTTTGGATAATGGATGACATGGGTGGACGAATTGACGAACTGGAAA
AGAACATAGGTGATCTTATGCAACAAGCTGGCATCGAAGATGAACCTGCT
AAAAACAAGATAAATTTCAAGCAATGTCGGATCAAATATTGACAAGAAGT
TGAAAACTTGCTGAGCACAATGATGGATGGTCCTATGTCTCCAAAGAAAG
AAAAGTCTGATCCTTTATCACCTGCAGTATCAACAGAACCAAAAAATGTG
CAAGATCTCACTGTATTTGTTGTTGTTTTTATCCGAGGTTACTAGCTCTT
ATTTGATTATTTTTGGATAATGGATGACATGGGTGGACGAATTGACGAAC
TGGAAAAGAACATAGGTGATCTTATGCAACAAGCTGGCATCGAAGATGAA
CCTGCTAAAAACAAGATAAATTTCAAGCAATGTCGGATCAAATATTGACA
AGAAGTTGAAAACTTGCTGAGCACAATGATGGATGGTCCTATGTCTCCAA
AGAAAGAAAAGTCTGATCCTTTATCACCTGCAGTATCAACAGAACCAAAA
AATGTGCAAGATCTCACTGTATTTGTTGTTGTTTTTATCCGAGGTTACTA
GCTCTTATTTGATTATTTTTGGATAATGGATGACATGGGTGGACGAATTG
ACGAACTGGAAAAGAACATAGGTGATCTTATGCAACAAGCTGGCATCGAA
GATGAACCTGCTAAAAACAAGATAAATTTCAAGCAATGTCGGATCAAATA
TTGACAAGAAGTTGAAAACTTGCTGAGCACAATGATGGATGGTCCTATGT
CTCCAAAGAAAGAAAAGTCTGATCCTTTATCACCTGCAGTATCAACAGAA
CCAAAAAATGTGCAAGATCTCACTGTATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038115XLOC_038115Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060602-exon-scaffold_345-1575043694:200655..200880TCONS_00060602-exon-scaffold_345-1575043694:200655..200880Clytia hemisphaericaexon
TCONS_00060602-exon-scaffold_345-1575043694:197461..197484TCONS_00060602-exon-scaffold_345-1575043694:197461..197484Clytia hemisphaericaexon
TCONS_00060602-exon-scaffold_345-1575043694:196640..196682TCONS_00060602-exon-scaffold_345-1575043694:196640..196682Clytia hemisphaericaexon
TCONS_00060602-exon-scaffold_345-1575043694:196130..196220TCONS_00060602-exon-scaffold_345-1575043694:196130..196220Clytia hemisphaericaexon
TCONS_00060602-exon-scaffold_345-1575043694:194602..194745TCONS_00060602-exon-scaffold_345-1575043694:194602..194745Clytia hemisphaericaexon
TCONS_00060602-exon-scaffold_345-1575043694:193647..193747TCONS_00060602-exon-scaffold_345-1575043694:193647..193747Clytia hemisphaericaexon
TCONS_00060602-exon-scaffold_345-1575043694:191918..192114TCONS_00060602-exon-scaffold_345-1575043694:191918..192114Clytia hemisphaericaexon
TCONS_00060602-exon-scaffold_345-1510915933:200655..200880TCONS_00060602-exon-scaffold_345-1510915933:200655..200880Clytia hemisphaericaexon
TCONS_00060602-exon-scaffold_345-1510915933:197461..197484TCONS_00060602-exon-scaffold_345-1510915933:197461..197484Clytia hemisphaericaexon
TCONS_00060602-exon-scaffold_345-1510915933:196640..196682TCONS_00060602-exon-scaffold_345-1510915933:196640..196682Clytia hemisphaericaexon
TCONS_00060602-exon-scaffold_345-1510915933:196130..196220TCONS_00060602-exon-scaffold_345-1510915933:196130..196220Clytia hemisphaericaexon
TCONS_00060602-exon-scaffold_345-1510915933:194602..194745TCONS_00060602-exon-scaffold_345-1510915933:194602..194745Clytia hemisphaericaexon
TCONS_00060602-exon-scaffold_345-1510915933:193647..193747TCONS_00060602-exon-scaffold_345-1510915933:193647..193747Clytia hemisphaericaexon
TCONS_00060602-exon-scaffold_345-1510915933:191918..192114TCONS_00060602-exon-scaffold_345-1510915933:191918..192114Clytia hemisphaericaexon
TCONS_00060602-exon-scaffold_345-1491911889:200655..200880TCONS_00060602-exon-scaffold_345-1491911889:200655..200880Clytia hemisphaericaexon
TCONS_00060602-exon-scaffold_345-1491911889:197461..197484TCONS_00060602-exon-scaffold_345-1491911889:197461..197484Clytia hemisphaericaexon
TCONS_00060602-exon-scaffold_345-1491911889:196640..196682TCONS_00060602-exon-scaffold_345-1491911889:196640..196682Clytia hemisphaericaexon
TCONS_00060602-exon-scaffold_345-1491911889:196130..196220TCONS_00060602-exon-scaffold_345-1491911889:196130..196220Clytia hemisphaericaexon
TCONS_00060602-exon-scaffold_345-1491911889:194602..194745TCONS_00060602-exon-scaffold_345-1491911889:194602..194745Clytia hemisphaericaexon
TCONS_00060602-exon-scaffold_345-1491911889:193647..193747TCONS_00060602-exon-scaffold_345-1491911889:193647..193747Clytia hemisphaericaexon
TCONS_00060602-exon-scaffold_345-1491911889:191918..192114TCONS_00060602-exon-scaffold_345-1491911889:191918..192114Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060602-proteinTCONS_00060602-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_345supercontigscaffold_345:191918..200880 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.831461	0.219273	0.965153	1.27965	0.488058	0.467515	0.641516	0.439845	1.15872	2.66492	0.64915	1.20553	18.1982	14.4979	0.776295	1.33036	16.3912	16.8475	58.1918	40.4768	72.6423	70.4686	28.2458	33.4921	6.31195	20.3458	0.950149	0	0.171377	0.540058
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR009643HS1-bd
Vocabulary: Molecular Function
TermDefinition
GO:0003714transcription corepressor activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003714 transcription corepressor activity
Blast
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BLAST of TCONS_00060602 vs. Swiss-Prot (Human)
Match: HSBP1 (Heat shock factor-binding protein 1 OS=Homo sapiens GN=HSBP1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 3.459e-21
Identity = 41/60 (68.33%), Postives = 48/60 (80.00%), Query Frame = 2 
Query:  191 TEPKNVQDLTVFVENLLSTMQDKFQAMSDQILTRMDDMGGRIDELEKNIGDLMQQAGIED 370
            T+PK VQDLT  V+ LL  MQDKFQ MSDQI+ R+DDM  RID+LEKNI DLM QAG+E+
Sbjct:    4 TDPKTVQDLTSVVQTLLQQMQDKFQTMSDQIIGRIDDMSSRIDDLEKNIADLMTQAGVEE 63
The following BLAST results are available for this feature:
BLAST of TCONS_00060602 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HSBP13.459e-2168.33Heat shock factor-binding protein 1 OS=Homo sapien... [more]
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