TCONS_00060602-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00060602-protein
Unique NameTCONS_00060602-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length101

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060602-protein ID=TCONS_00060602-protein|Name=TCONS_00060602-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
MDGPMSPKKEKSDPLSPAVSTEPKNVQDLTVFVENLLSTMQDKFQAMSDQ
ILTRMDDMGGRIDELEKNIGDLMQQAGIEDEPAKKLLFLSEVTSSYLIIF
G
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038115XLOC_038115Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060602TCONS_00060602Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009643HS1-bd
Vocabulary: Molecular Function
TermDefinition
GO:0003714transcription corepressor activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003714 transcription corepressor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 55..75
NoneNo IPR availableGENE3D3.90.20.10coord: 24..87
e-value: 2.6E-4
score: 20.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
IPR009643Heat shock factor binding 1PFAMPF06825HSBP1coord: 27..77
e-value: 1.2E-26
score: 92.3

Blast
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BLAST of TCONS_00060602-protein vs. Swiss-Prot (Human)
Match: HSBP1 (Heat shock factor-binding protein 1 OS=Homo sapiens GN=HSBP1 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.529e-24
Identity = 41/60 (68.33%), Postives = 48/60 (80.00%), Query Frame = 0 
Query:   21 TEPKNVQDLTVFVENLLSTMQDKFQAMSDQILTRMDDMGGRIDELEKNIGDLMQQAGIED 80
            T+PK VQDLT  V+ LL  MQDKFQ MSDQI+ R+DDM  RID+LEKNI DLM QAG+E+
Sbjct:    4 TDPKTVQDLTSVVQTLLQQMQDKFQTMSDQIIGRIDDMSSRIDDLEKNIADLMTQAGVEE 63
The following BLAST results are available for this feature:
BLAST of TCONS_00060602-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HSBP13.529e-2468.33Heat shock factor-binding protein 1 OS=Homo sapien... [more]
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