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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060600 ID=TCONS_00060600|Name=TCONS_00060600|organism=Clytia hemisphaerica|type=transcript|length=4928bpRun BLAST on NCBI protein sequence of TCONS_00060600-protein >TCONS_00060600-protein ID=TCONS_00060600-protein|Name=TCONS_00060600-protein|organism=Clytia hemisphaerica|type=polypeptide|length=632bp MPFIFSERLPVPTLKSYCCLSLLIFATSIAYWRNIDQKGSFNDTFIDFIDRun BLAST on NCBI transcript from alignment at scaffold_345:156991..173832- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060600 ID=TCONS_00060600|Name=TCONS_00060600|organism=Clytia hemisphaerica|type=transcript|length=16842bp|location=Sequence derived from alignment at scaffold_345:156991..173832- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_345:156991..173832- >TCONS_00060600 ID=TCONS_00060600|Name=TCONS_00060600|organism=Clytia hemisphaerica|type=CDS|length=24687bp|location=Sequence derived from alignment at scaffold_345:156991..173832- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00060600 vs. Swiss-Prot (Human)
Match: AMFR (E3 ubiquitin-protein ligase AMFR OS=Homo sapiens GN=AMFR PE=1 SV=2) HSP 1 Score: 341.658 bits (875), Expect = 2.051e-101 Identity = 203/553 (36.71%), Postives = 308/553 (55.70%), Query Frame = 1
Query: 238 MPFIFSERLPVPTLKSYCCLS-LLIFATSIAYWRNIDQK------------------------GSFNDTFIDFIDAIISEPFTLWPLVNMAFCCLFLCGKLIQRMLLGKLRVVEEQHLQEKFWNFIFYKVIFVFGVISAQSLHEVLCWATWFSLLGFLSIFLQLCKDRYEHVTSTPNMTQTNHIKLLVLIFGIIVLSFVLGVLAISYKESFGFNEFAFMLTECILMGLKSLHMFLKYIFQLKNTQHTGLWDNKKKLTYYTNLGLRLIILSADLGFHFHMIIWSNVFVSMASLVLYWNIRSIFSEIXXXXXXXXXXXXXXXSVNARIPMANEEELSEIEDHCAICWEGLETARKLPCGHFFHHNCLCSWLEQDISCPTCRRPLSADIGLLPGVHGELAADQNTENEVDFEEVDADNQNNXXXXXXXXXXLRNYFFYLDGQQIANWFPSLSIEVFHGR--MGGEQQGDDEINEMAQQLFTMFPNVGQEAIIGDLQRTHSVEATADNILEGLVAPPNTTNAIVREEAPPIALSPEERQVDTNVVMSPVLEPGTDTE 1815
MP +F ER P P+L++Y LS L + T I+ +R + Q + D ++S+ +W LVN A C L L KLIQ ++ G LRV E QHL++KFWNFIFYK IF+FGV++ Q++ EV+ W WF+ L FL + +QLCKDR+E+++ +P ++H ++L L+ +++ L + + G + AFM E +L+ +++ H+ L+Y+ L + H G W+ K YYT+ + L +LS DL H HM+++ N+++SMASLV++ +R +F E++ +++H+ Y +++ ++ AR +A EEL+ D CAICW+ ++ ARKLPCGH FH++CL SWLEQD SCPTCR +S +I V E + EN V + + N N+FF+ DG +IA+W PS S+EV H +G Q + ++N MA Q+ MFP V ++ DLQ T SVE T DNILEG + P T R ++ AL+ SPV P +D E
Sbjct: 1 MPLLFLERFPWPSLRTYTGLSGLALLGTIISAYRALSQPEAGPGEPDQLTASLQPEPPAPARPSAGGPRARDVAQYLLSDSLFVWVLVNTACCVLMLVAKLIQCIVFGPLRVSERQHLKDKFWNFIFYKFIFIFGVLNVQTVEEVVMWCLWFAGLVFLHLMVQLCKDRFEYLSFSPTTPMSSHGRVLSLLVAMLLSCCGLAAVCSITGYTHGMHTLAFMAAESLLVTVRTAHVILRYVIHLWDLNHEGTWEGKGTYVYYTDFVMELTLLSLDLMHHIHMLLFGNIWLSMASLVIFMQLRYLFHEVQRRIRRHKNYLRVVGNMEARFAVATPEELAVNNDDCAICWDSMQAARKLPCGHLFHNSCLRSWLEQDTSCPTCR--MSLNIADNNRVREEHQGENLDENLVPVAAAEGRPRLNQ----------HNHFFHFDGSRIASWLPSFSVEVMHTTNILGITQASNSQLNAMAHQIQEMFPQVPYHLVLQDLQLTRSVEITTDNILEGRIQVPFPTQ---RSDSIRPALN------------SPVERPSSDQE 526 The following BLAST results are available for this feature:
BLAST of TCONS_00060600 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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