TCONS_00060600-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00060600-protein
Unique NameTCONS_00060600-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length632

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060600-protein ID=TCONS_00060600-protein|Name=TCONS_00060600-protein|organism=Clytia hemisphaerica|type=polypeptide|length=632bp
MPFIFSERLPVPTLKSYCCLSLLIFATSIAYWRNIDQKGSFNDTFIDFID
AIISEPFTLWPLVNMAFCCLFLCGKLIQRMLLGKLRVVEEQHLQEKFWNF
IFYKVIFVFGVISAQSLHEVLCWATWFSLLGFLSIFLQLCKDRYEHVTST
PNMTQTNHIKLLVLIFGIIVLSFVLGVLAISYKESFGFNEFAFMLTECIL
MGLKSLHMFLKYIFQLKNTQHTGLWDNKKKLTYYTNLGLRLIILSADLGF
HFHMIIWSNVFVSMASLVLYWNIRSIFSEIKLLLKKHRLYKKILKSVNAR
IPMANEEELSEIEDHCAICWEGLETARKLPCGHFFHHNCLCSWLEQDISC
PTCRRPLSADIGLLPGVHGELAADQNTENEVDFEEVDADNQNNGGGGGAG
GGGLRNYFFYLDGQQIANWFPSLSIEVFHGRMGGEQQGDDEINEMAQQLF
TMFPNVGQEAIIGDLQRTHSVEATADNILEGLVAPPNTTNAIVREEAPPI
ALSPEERQVDTNVVMSPVLEPGTDTESDLIEDSSGAEDTASLRRFDGGPF
DGARRRAHVNPREVMRRRQVKRTNHTSSTSSEPSTENNPPITSLLSSRDN
TNQPITTFPQERDQRRSILLEAIERRYNPSST
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038114XLOC_038114Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060600TCONS_00060600Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR003892CUE
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 316..353
e-value: 1.0E-6
score: 38.3
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 315..354
e-value: 2.7E-10
score: 40.3
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 316..354
score: 12.637
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 316..357
e-value: 4.45416E-11
score: 57.8408
IPR003892Ubiquitin system component CueSMARTSM00546cue_7coord: 441..482
e-value: 9.3E-9
score: 45.1
IPR003892Ubiquitin system component CuePFAMPF02845CUEcoord: 443..481
e-value: 8.9E-8
score: 31.6
IPR003892Ubiquitin system component CuePROSITEPS51140CUEcoord: 441..483
score: 14.183
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 286..589
e-value: 8.3E-19
score: 67.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 518..614
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 300..364

Blast
[Close]
BLAST of TCONS_00060600-protein vs. Swiss-Prot (Human)
Match: AMFR (E3 ubiquitin-protein ligase AMFR OS=Homo sapiens GN=AMFR PE=1 SV=2)

HSP 1 Score: 363.614 bits (932), Expect = 2.378e-117
Identity = 230/672 (34.23%), Postives = 349/672 (51.93%), Query Frame = 0 
Query:    1 MPFIFSERLPVPTLKSYCCLS-LLIFATSIAYWRNIDQK------------------------GSFNDTFIDFIDAIISEPFTLWPLVNMAFCCLFLCGKLIQRMLLGKLRVVEEQHLQEKFWNFIFYKVIFVFGVISAQSLHEVLCWATWFSLLGFLSIFLQLCKDRYEHVTSTPNMTQTNHIKLLVLIFGIIVLSFVLGVLAISYKESFGFNEFAFMLTECILMGLKSLHMFLKYIFQLKNTQHTGLWDNKKKLTYYTNLGLRLIILSADLGFHFHMIIWSNVFVSMASLVLYWNIRSIFSEIKLLLKKHRLYKKILKSVNARIPMANEEELSEIEDHCAICWEGLETARKLPCGHFFHHNCLCSWLEQDISCPTCRRPLSADIGLLPGVHGELAADQNTENEVDFEEVDADNQNNGGGGGAGGGGLRNYFFYLDGQQIANWFPSLSIEVFHGR--MGGEQQGDDEINEMAQQLFTMFPNVGQEAIIGDLQRTHSVEATADNILEGLVAPPNTTNAIVREEAPPIALSPEER----------QVDTNVV---MSPVLEPGTDTESDLIEDSSGAEDTASLRRFDGGPFDGARRRAHVNPREVMRRRQVKRTNHTSSTSSEPSTENNPPITSLLSSRDNTNQPITTFPQERDQRRSILLEAIERRYNPSST 632
            MP +F ER P P+L++Y  LS L +  T I+ +R + Q                          +      D    ++S+   +W LVN A C L L  KLIQ ++ G LRV E QHL++KFWNFIFYK IF+FGV++ Q++ EV+ W  WF+ L FL + +QLCKDR+E+++ +P    ++H ++L L+  +++    L  +      + G +  AFM  E +L+ +++ H+ L+Y+  L +  H G W+ K    YYT+  + L +LS DL  H HM+++ N+++SMASLV++  +R +F E++  +++H+ Y +++ ++ AR  +A  EEL+   D CAICW+ ++ ARKLPCGH FH++CL SWLEQD SCPTCR  L+            +A +     E   E +D +        G       N+FF+ DG +IA+W PS S+EV H    +G  Q  + ++N MA Q+  MFP V    ++ DLQ T SVE T DNILEG +  P  T     +   P   SP ER             T  V   +SP LE   D     +E S   +  A   RF     +  R+R  V  ++ + ++  KR  + SS       E++    S L S   ++ P+T        RR +L  A ERR     T
Sbjct:    1 MPLLFLERFPWPSLRTYTGLSGLALLGTIISAYRALSQPEAGPGEPDQLTASLQPEPPAPARPSAGGPRARDVAQYLLSDSLFVWVLVNTACCVLMLVAKLIQCIVFGPLRVSERQHLKDKFWNFIFYKFIFIFGVLNVQTVEEVVMWCLWFAGLVFLHLMVQLCKDRFEYLSFSPTTPMSSHGRVLSLLVAMLLSCCGLAAVCSITGYTHGMHTLAFMAAESLLVTVRTAHVILRYVIHLWDLNHEGTWEGKGTYVYYTDFVMELTLLSLDLMHHIHMLLFGNIWLSMASLVIFMQLRYLFHEVQRRIRRHKNYLRVVGNMEARFAVATPEELAVNNDDCAICWDSMQAARKLPCGHLFHNSCLRSWLEQDTSCPTCRMSLN------------IADNNRVREEHQGENLDENLVPVAAAEGRPRLNQHNHFFHFDGSRIASWLPSFSVEVMHTTNILGITQASNSQLNAMAHQIQEMFPQVPYHLVLQDLQLTRSVEITTDNILEGRIQVPFPTQR--SDSIRPALNSPVERPSSDQEEGETSAQTERVPLDLSPRLEETLDFGEVEVEPSEVEDFEARGSRFSKSADE--RQRMLVQRKDELLQQARKRFLNKSS-------EDDAASESFLPSEGASSDPVTL-------RRRMLAAAAERRLQKQQT 642
The following BLAST results are available for this feature:
BLAST of TCONS_00060600-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AMFR2.378e-11734.23E3 ubiquitin-protein ligase AMFR OS=Homo sapiens G... [more]
back to top