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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060599 ID=TCONS_00060599|Name=TCONS_00060599|organism=Clytia hemisphaerica|type=transcript|length=4504bpRun BLAST on NCBI protein sequence of TCONS_00060599-protein >TCONS_00060599-protein ID=TCONS_00060599-protein|Name=TCONS_00060599-protein|organism=Clytia hemisphaerica|type=polypeptide|length=814bp MGDVNFEDLLNRAEQLTADVDTGTELPRIQRNLPQLAEASQRLLSRTLGGRun BLAST on NCBI transcript from alignment at scaffold_345:122467..139948- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060599 ID=TCONS_00060599|Name=TCONS_00060599|organism=Clytia hemisphaerica|type=transcript|length=17482bp|location=Sequence derived from alignment at scaffold_345:122467..139948- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_345:122467..139948- >TCONS_00060599 ID=TCONS_00060599|Name=TCONS_00060599|organism=Clytia hemisphaerica|type=CDS|length=36675bp|location=Sequence derived from alignment at scaffold_345:122467..139948- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00060599 vs. Swiss-Prot (Human)
Match: NUP93 (Nuclear pore complex protein Nup93 OS=Homo sapiens GN=NUP93 PE=1 SV=2) HSP 1 Score: 775.393 bits (2001), Expect = 0.000e+0 Identity = 390/829 (47.04%), Postives = 568/829 (68.52%), Query Frame = 2
Query: 1559 MGDVNFEDLLNRAEQLTADVDTGTELPRIQRNLPQLAEASQRLLSRTLGGVG-ETSDVQASLLLSTKGIEVPKLSQRLESLNTTKTFEPIEPVIETDIHGFLKNERENAILATIEETKRRTFEESEKLFMDSLEDEWEREKQKILNSLLGAGKQAMSFPMDSSRFEEAAITK----GRSSLTSIEMGYARQVFLCNESTLQGK-KCNYVESFKQVSQKFNDQNVKDTWGLIEHLVTNLPKPAGSTLKLRQSKDFQAALVKNAKIFLENRYRDFVENCVYSNLQQAKLGGIPGLYNLVQSFLKIKVVSSSSGFEDGLVNGVPVWPLIYFCLRCGDKDATQRAAEGLPPQYGEFKTSLKEYLTSPDNRLHPNNEAKIKLQYKRVIRSSPDPFKRIIFCIIGHCDANEAHTEVAKKTEDYIWLKLNQI----DFATEDEDIVTLPRFQKLLHEEYGESHFRAFEQPYLYAQVLFLTGQFEAAIEFLSRQDHCRCHAIHIGIALHAENLLLVPNAIHSSLLSADPNDPVPLKRLNYPRLITIYTRKFEVTDPREALEYFYLLRNIDGANGDDLFASCVSELTLETREFETILGSVNHDGSKKPGCVSKFKLDVKNIVSTIAKDAENKGSFEDAAMLYDLADNHEKVLELLSNLICQFVALANSPKSSRERIQTMARGIAERYKTRGHDGSRSRSSTFYLLVDLMFFFDLYHQKQNEEALDVIQKIKLIPLSMEEVEQKVNSFKQYSDEIRQCMPDVLLKTMNILYEKFKQSRST-----LRPSVLGIRKEKDETYTTDLKTKARALVTFAGLLPYRMPGDTNARLVQLEVMMH 4000
M F +LL +AEQL A+ + +ELP ++RNL ++ +A +RL SRTL ET+DV+AS+LL ++G+++ +SQRLESL+ TFEP+EPV +TDI GFLKNE++NA+L+ IEE+++RTF +E+ +S+ EWE+ KQ+IL++LL +G+ A+ F +S E + I+ GRSSL +IEM YARQ+++ NE + G + N V+ V++ +D+++ D W +++ + L PA LK R S + + V+ A +LE Y+++ V+ NL QA+LGG+PG Y LV+SFL IK+ + G +DG V G PVW LIY+C+RCGD A + Q GEFKT +EY+ S D RL P E K++L Y+R +R++ DP+KR ++CIIG CD + +EVA KTEDY+WLKLNQ+ D + +D +TL +FQK L E+YGESHF +QP+LY QVLFLT QFEAA+ FL R + RCHA+H+ + L LLL + + LLS +P DP L+RLN+ RL+ +YTRKFE TDPREAL+YFY LR+ + G+++F CVSEL +E+REF+ ILG + +DGS+KPG + KF D K I++ +A AENKG FE+AA LYDLA N +KVLEL++ L+ V ++P+S++ER++ MA IAERY+ +G ++ STFYLL+DL+ FFD YH + A D+I+++KL+PL+ E VE++V +F+ +SDEIR + +VLL TMNIL+ +FK+ + T RP + +++D + L+++AR L+TFAG++PYR GDTNARLVQ+EV+M+
Sbjct: 1 MDTEGFGELLQQAEQLAAETEGISELPHVERNLQEIQQAGERLRSRTLTRTSQETADVKASVLLGSRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNEKDNALLSAIEESRKRTFGMAEEYHRESMLVEWEQVKQRILHTLLASGEDALDFTQES---EPSYISDVGPPGRSSLDNIEMAYARQIYIYNEKIVNGHLQPNLVDLCASVAE-LDDKSISDMWTMVKQMTDVLLTPATDALKNRSSVEVRMEFVRQALAYLEQSYKNYTLVTVFGNLHQAQLGGVPGTYQLVRSFLNIKLPAPLPGLQDGEVEGHPVWALIYYCMRCGDLLAASQVVNRAQHQLGEFKTWFQEYMNSKDRRLSPATENKLRLHYRRALRNNTDPYKRAVYCIIGRCDVTDNQSEVADKTEDYLWLKLNQVCFDDDGTSSPQDRLTLSQFQKQLLEDYGESHFTVNQQPFLYFQVLFLTAQFEAAVAFLFRMERLRCHAVHVALVLFELKLLLKSSGQSAQLLSHEPGDPPCLRRLNFVRLLMLYTRKFESTDPREALQYFYFLRDEKDSQGENMFLRCVSELVIESREFDMILGKLENDGSRKPGVIDKFTSDTKPIINKVASVAENKGLFEEAAKLYDLAKNADKVLELMNKLLSPVVPQISAPQSNKERLKNMALSIAERYRAQGISANKFVDSTFYLLLDLITFFDEYHSGHIDRAFDIIERLKLVPLNQESVEERVAAFRNFSDEIRHNLSEVLLATMNILFTQFKRLKGTSPSSSSRPQ--RVIEDRD----SQLRSQARTLITFAGMIPYRTSGDTNARLVQMEVLMN 819 The following BLAST results are available for this feature:
BLAST of TCONS_00060599 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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