TCONS_00060599-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00060599-protein
Unique NameTCONS_00060599-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length814

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060599-protein ID=TCONS_00060599-protein|Name=TCONS_00060599-protein|organism=Clytia hemisphaerica|type=polypeptide|length=814bp
MGDVNFEDLLNRAEQLTADVDTGTELPRIQRNLPQLAEASQRLLSRTLGG
VGETSDVQASLLLSTKGIEVPKLSQRLESLNTTKTFEPIEPVIETDIHGF
LKNERENAILATIEETKRRTFEESEKLFMDSLEDEWEREKQKILNSLLGA
GKQAMSFPMDSSRFEEAAITKGRSSLTSIEMGYARQVFLCNESTLQGKKC
NYVESFKQVSQKFNDQNVKDTWGLIEHLVTNLPKPAGSTLKLRQSKDFQA
ALVKNAKIFLENRYRDFVENCVYSNLQQAKLGGIPGLYNLVQSFLKIKVV
SSSSGFEDGLVNGVPVWPLIYFCLRCGDKDATQRAAEGLPPQYGEFKTSL
KEYLTSPDNRLHPNNEAKIKLQYKRVIRSSPDPFKRIIFCIIGHCDANEA
HTEVAKKTEDYIWLKLNQIDFATEDEDIVTLPRFQKLLHEEYGESHFRAF
EQPYLYAQVLFLTGQFEAAIEFLSRQDHCRCHAIHIGIALHAENLLLVPN
AIHSSLLSADPNDPVPLKRLNYPRLITIYTRKFEVTDPREALEYFYLLRN
IDGANGDDLFASCVSELTLETREFETILGSVNHDGSKKPGCVSKFKLDVK
NIVSTIAKDAENKGSFEDAAMLYDLADNHEKVLELLSNLICQFVALANSP
KSSRERIQTMARGIAERYKTRGHDGSRSRSSTFYLLVDLMFFFDLYHQKQ
NEEALDVIQKIKLIPLSMEEVEQKVNSFKQYSDEIRQCMPDVLLKTMNIL
YEKFKQSRSTLRPSVLGIRKEKDETYTTDLKTKARALVTFAGLLPYRMPG
DTNARLVQLEVMMH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038113XLOC_038113Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060599TCONS_00060599Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
IPR007231Nucleoporin_int_Nup93/Nic96
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0005643nuclear pore
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
cellular_component GO:0005643 nuclear pore
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 242..759
e-value: 1.0E-4
score: 21.1
IPR007231Nucleoporin interacting component Nup93/Nic96PFAMPF04097Nic96coord: 214..799
e-value: 2.8E-173
score: 577.6

Blast
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BLAST of TCONS_00060599-protein vs. Swiss-Prot (Human)
Match: NUP93 (Nuclear pore complex protein Nup93 OS=Homo sapiens GN=NUP93 PE=1 SV=2)

HSP 1 Score: 775.393 bits (2001), Expect = 0.000e+0
Identity = 390/829 (47.04%), Postives = 568/829 (68.52%), Query Frame = 0 
Query:    1 MGDVNFEDLLNRAEQLTADVDTGTELPRIQRNLPQLAEASQRLLSRTLGGVG-ETSDVQASLLLSTKGIEVPKLSQRLESLNTTKTFEPIEPVIETDIHGFLKNERENAILATIEETKRRTFEESEKLFMDSLEDEWEREKQKILNSLLGAGKQAMSFPMDSSRFEEAAITK----GRSSLTSIEMGYARQVFLCNESTLQGK-KCNYVESFKQVSQKFNDQNVKDTWGLIEHLVTNLPKPAGSTLKLRQSKDFQAALVKNAKIFLENRYRDFVENCVYSNLQQAKLGGIPGLYNLVQSFLKIKVVSSSSGFEDGLVNGVPVWPLIYFCLRCGDKDATQRAAEGLPPQYGEFKTSLKEYLTSPDNRLHPNNEAKIKLQYKRVIRSSPDPFKRIIFCIIGHCDANEAHTEVAKKTEDYIWLKLNQI----DFATEDEDIVTLPRFQKLLHEEYGESHFRAFEQPYLYAQVLFLTGQFEAAIEFLSRQDHCRCHAIHIGIALHAENLLLVPNAIHSSLLSADPNDPVPLKRLNYPRLITIYTRKFEVTDPREALEYFYLLRNIDGANGDDLFASCVSELTLETREFETILGSVNHDGSKKPGCVSKFKLDVKNIVSTIAKDAENKGSFEDAAMLYDLADNHEKVLELLSNLICQFVALANSPKSSRERIQTMARGIAERYKTRGHDGSRSRSSTFYLLVDLMFFFDLYHQKQNEEALDVIQKIKLIPLSMEEVEQKVNSFKQYSDEIRQCMPDVLLKTMNILYEKFKQSRST-----LRPSVLGIRKEKDETYTTDLKTKARALVTFAGLLPYRMPGDTNARLVQLEVMMH 814
            M    F +LL +AEQL A+ +  +ELP ++RNL ++ +A +RL SRTL     ET+DV+AS+LL ++G+++  +SQRLESL+   TFEP+EPV +TDI GFLKNE++NA+L+ IEE+++RTF  +E+   +S+  EWE+ KQ+IL++LL +G+ A+ F  +S   E + I+     GRSSL +IEM YARQ+++ NE  + G  + N V+    V++  +D+++ D W +++ +   L  PA   LK R S + +   V+ A  +LE  Y+++    V+ NL QA+LGG+PG Y LV+SFL IK+ +   G +DG V G PVW LIY+C+RCGD  A  +       Q GEFKT  +EY+ S D RL P  E K++L Y+R +R++ DP+KR ++CIIG CD  +  +EVA KTEDY+WLKLNQ+    D  +  +D +TL +FQK L E+YGESHF   +QP+LY QVLFLT QFEAA+ FL R +  RCHA+H+ + L    LLL  +   + LLS +P DP  L+RLN+ RL+ +YTRKFE TDPREAL+YFY LR+   + G+++F  CVSEL +E+REF+ ILG + +DGS+KPG + KF  D K I++ +A  AENKG FE+AA LYDLA N +KVLEL++ L+   V   ++P+S++ER++ MA  IAERY+ +G   ++   STFYLL+DL+ FFD YH    + A D+I+++KL+PL+ E VE++V +F+ +SDEIR  + +VLL TMNIL+ +FK+ + T      RP    + +++D    + L+++AR L+TFAG++PYR  GDTNARLVQ+EV+M+
Sbjct:    1 MDTEGFGELLQQAEQLAAETEGISELPHVERNLQEIQQAGERLRSRTLTRTSQETADVKASVLLGSRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNEKDNALLSAIEESRKRTFGMAEEYHRESMLVEWEQVKQRILHTLLASGEDALDFTQES---EPSYISDVGPPGRSSLDNIEMAYARQIYIYNEKIVNGHLQPNLVDLCASVAE-LDDKSISDMWTMVKQMTDVLLTPATDALKNRSSVEVRMEFVRQALAYLEQSYKNYTLVTVFGNLHQAQLGGVPGTYQLVRSFLNIKLPAPLPGLQDGEVEGHPVWALIYYCMRCGDLLAASQVVNRAQHQLGEFKTWFQEYMNSKDRRLSPATENKLRLHYRRALRNNTDPYKRAVYCIIGRCDVTDNQSEVADKTEDYLWLKLNQVCFDDDGTSSPQDRLTLSQFQKQLLEDYGESHFTVNQQPFLYFQVLFLTAQFEAAVAFLFRMERLRCHAVHVALVLFELKLLLKSSGQSAQLLSHEPGDPPCLRRLNFVRLLMLYTRKFESTDPREALQYFYFLRDEKDSQGENMFLRCVSELVIESREFDMILGKLENDGSRKPGVIDKFTSDTKPIINKVASVAENKGLFEEAAKLYDLAKNADKVLELMNKLLSPVVPQISAPQSNKERLKNMALSIAERYRAQGISANKFVDSTFYLLLDLITFFDEYHSGHIDRAFDIIERLKLVPLNQESVEERVAAFRNFSDEIRHNLSEVLLATMNILFTQFKRLKGTSPSSSSRPQ--RVIEDRD----SQLRSQARTLITFAGMIPYRTSGDTNARLVQMEVLMN 819
The following BLAST results are available for this feature:
BLAST of TCONS_00060599-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NUP930.000e+047.04Nuclear pore complex protein Nup93 OS=Homo sapiens... [more]
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