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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060588 ID=TCONS_00060588|Name=TCONS_00060588|organism=Clytia hemisphaerica|type=transcript|length=2369bpRun BLAST on NCBI transcript from alignment at scaffold_345:233975..243224+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060588 ID=TCONS_00060588|Name=TCONS_00060588|organism=Clytia hemisphaerica|type=transcript|length=9250bp|location=Sequence derived from alignment at scaffold_345:233975..243224+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00060588 vs. Swiss-Prot (Human)
Match: CNO10 (CCR4-NOT transcription complex subunit 10 OS=Homo sapiens GN=CNOT10 PE=1 SV=1) HSP 1 Score: 392.119 bits (1006), Expect = 1.156e-123 Identity = 243/707 (34.37%), Postives = 378/707 (53.47%), Query Frame = 1
Query: 124 QENQTREIASAHKAITDQDRQIAGSASSCFKEKKYDQCSQHMKKLSEQRPHDPRVIVNKAVLDYYISNFSKTDYFMKQMQNAKKQFEFG-NSGDELDDIDRCYFFYNQAVLHFYLKQYKSSLNLLDRLYKVIEPLGDVLAAKVCFLFVEVCLLNNQHDQAFGMITYTESVI---------LAKPLDNN--------AKNVEFMKACQNKLRLSKARLYLVRGFYAQCKKELELAISGEHEPTEVLFLKSQVECLRCNYQKSISILHSTNKNTPSDPYKP---LQTMYQNNLGCIHFLTKKYNLAVSYFKKACVENAAIMKKLQ--SIDKNQPLSGRPLHTLTINKRAELFFNMGLSLLYAGRPSQAFECLLESHNVYQCNPRYWLRFAECCIAVHQETIEKEFSCVDRKNMNVYDAMGSGVNRKLVVAPTHFDQHXXXXXXXXXXXXXXXLSFGSMCLSNACTLLPSE--SVLEENMTKFLQNEKPVPGGGADDKESVKRSFI---GRIFVDAPPGHPIQTKEIYHLRASVVCCQAYISLTIGDYYKCVEHSRSLLRMTHISGPQKFLGHSYLAESLIKLDKIAEAIRELSTDNL-------------KAYQTFDQETLELN---TVDTFPKSLGSARMVMMLNLASVYAIRAEYDKCKQILHQIALVVDMHSPIKYHAILLSAYCELQLGKITSALSLIKKHEIFP 2112
Q + E ITDQ+++++ +A F YD C QH+ L + D ++I+N AV +++ SN + TD + + K Q D LDD++ +YNQAV+ ++L+QY ++++ ++LY+ IEP + A VCFL V++ +L Q ++A ++ E +I + +NN A++ ++A ++K+ K R Y+ CK+E++ ++ LFLKS E LR NY+K++ +L+S+N K L+ M+ NNLGCIHF K+NL + YFKKA EN + +L S D + SGRP+ TL NKR EL +N G+ LL+ GRP AFECL+E+ VY NPR WLR AECCIA ++ T E+E + K V +G G +RK+V+A Q++ S V ++ F ++CL NA LLP E +EN K N + G + S S G F+ APP P++ +E+ +L+ S++ C AY++L +GD + H+ LL+ +SG KFLGH Y AE+LI LD+I++AI L+ +N+ + + E +E + +P S+ SAR VM+ NL S Y +R+EYDK ++ LHQ A ++ + AILL+ Y ELQ G AL +IK++++ P
Sbjct: 9 QGAEKHEGTGQSSGITDQEKELSTNAFQAFTSGNYDACLQHLACLQDINKDDYKIILNTAVAEFFKSNQTTTDNLRQTLNQLKNQVHSAVEEMDGLDDVENSMLYYNQAVILYHLRQYTEAISVGEKLYQFIEPFEEKFAQAVCFLLVDLYILTYQAEKALHLLAVLEKMISQGNNNKNGKNETGNNNNKDGSNHKAESGALIEAAKSKIHQYKVRAYIQMKSLKACKREIKSVMNTAGNSAPSLFLKSNFEYLRGNYRKAVKLLNSSNIAEHPGFMKTGECLRCMFWNNLGCIHFAMSKHNLGIFYFKKALQENDNVCAQLSAGSTDPGKKFSGRPMCTLLTNKRYELLYNCGIQLLHIGRPLAAFECLIEAVQVYHANPRLWLRLAECCIAANKGTSEQETKGLPSKKGIVQSIVGQGYHRKIVLASQSI-QNTVYNDGQSSAIPVASMEFAAICLRNALLLLPEEQQDPKQENGAK---NSNQLGGNTESSESSETCSSKSHDGDKFIPAPPSSPLRKQELENLKCSILACSAYVALALGDNLMALNHADKLLQQPKLSGSLKFLGHLYAAEALISLDRISDAITHLNPENVTDVSLGISSNEQDQGSDKGENEAMESSGKRAPQCYPSSVNSARTVMLFNLGSAYCLRSEYDKARKCLHQAASMIHPKE-VPPEAILLAVYLELQNGNTQLALQIIKRNQLLP 710 The following BLAST results are available for this feature:
BLAST of TCONS_00060588 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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