|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060579 ID=TCONS_00060579|Name=TCONS_00060579|organism=Clytia hemisphaerica|type=transcript|length=3254bpRun BLAST on NCBI protein sequence of TCONS_00060579-protein >TCONS_00060579-protein ID=TCONS_00060579-protein|Name=TCONS_00060579-protein|organism=Clytia hemisphaerica|type=polypeptide|length=434bp MFLQRITRTQTSKEVLNSFKKSLLPVNNDGVQTGRSRFRTPWAQRIRSLVRun BLAST on NCBI transcript from alignment at scaffold_345:145929..158937+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060579 ID=TCONS_00060579|Name=TCONS_00060579|organism=Clytia hemisphaerica|type=transcript|length=13009bp|location=Sequence derived from alignment at scaffold_345:145929..158937+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_345:145929..158937+ >TCONS_00060579 ID=TCONS_00060579|Name=TCONS_00060579|organism=Clytia hemisphaerica|type=CDS|length=14355bp|location=Sequence derived from alignment at scaffold_345:145929..158937+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00060579 vs. Swiss-Prot (Human)
Match: TMLH (Trimethyllysine dioxygenase, mitochondrial OS=Homo sapiens GN=TMLHE PE=1 SV=1) HSP 1 Score: 221.861 bits (564), Expect = 5.870e-63 Identity = 132/415 (31.81%), Postives = 204/415 (49.16%), Query Frame = 1
Query: 178 KSLLPVNNDGVQTGRSRFRTPWAQRIRSLVTITSVEKISDEGVKIRFDNHAQEHKFSNIWLRDHCRCSECYFKETTQRRSETHSIPLDLKMTDVRVDNDQVKFSFSDGHVTSFDADWLFENQYGKKLYEAFTFESEKRKFWDKG-QENDMVPDISFGEVISNKEALYELLKNIAIYGHAFVSDTPSDVHKGVAEIGKAIGLLRATPYGTVWSIRGEEQLEGADYKDSSYWDISLPGHTDGTYNIDAPGLQFFNIPSHVGLGGESLLVDAIHCAHILRQKNKEAFEFLSTTSIPSLYYD----GDNIFKGYGPVIKLYPGTDTIYQVRINDLDRDTLSCLEYEDVKMFYRSIHLFTEILRHESNEVWFKLRHDQTMITDNWRVLHGRKQFTGVRYLQGGYLNREDYLSKLNVLHMK 1407
KSLLP+ T W Q ++ ++++ N +F +WLRDHCR + CY +T QR +T S+ L +K +R+D + F++ DGHVT +D +WL +N Y + + + R W+ + VP + + E L + L+N +YG AFV + P + ++ + I L+R T YG +W + D++Y ++L HTD TY + G+Q F+ H G GG +LLVD + A + QK E FE LS + Y + N G GPV+ +YP +Y +R N+ DR ++ + Y+ V +Y + T LR NE W KL+ + + DNWRVLHGR+ FTG R L G YL R+D L+ +L ++
Sbjct: 32 KSLLPLAVHWHHTASKSLTCAWQQH--------------EDHFELKYANTVM--RFDYVWLRDHCRSASCYNSKTHQRSLDTASVDLCIKPKTIRLDETTLFFTWPDGHVTKYDLNWLVKNSYEGQKQKVI----QPRILWNAEIYQQAQVPSVDCQSFLETNEGLKKFLQNFLLYGIAFVENVPP-TQEHTEKLAERISLIRETIYGRMWYFTSD-----FSRGDTAYTKLALDRHTDTTYFQEPCGIQVFHCLKHEGTGGRTLLVDGFYAAEQVLQKAPEEFELLSKVPLKHEYIEDVGECHNHMIGIGPVLNIYPWNKELYLIRYNNYDRAVINTVPYDVVHRWYTAHRTLTIELRRPENEFWVKLKPGRVLFIDNWRVLHGRECFTGYRQLCGCYLTRDDVLNTARLLGLQ 420 The following BLAST results are available for this feature:
BLAST of TCONS_00060579 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.