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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060564 ID=TCONS_00060564|Name=TCONS_00060564|organism=Clytia hemisphaerica|type=transcript|length=1954bp
tataaataaatttatagGAAACTGAAAAAGAAGCAAGAAATTAACAGCCA
AGAAATATTCTATCCTCTTAGAATTGGCATCTCTGTGGCTTAAAATTGTT
TGCCACTGGGCTATAATTGTAACAGGAGAAACAGTGTGTTAAAACTTGAG
AGGCAATGATAAACGATTCAATCAGCTAAAAGCAATATACGGTGCGCTTG
TTTTAGTTGTTAGGGCGTGGCTCTAAGTTGACTGTTATTATAAGGTTGAt
atgtttagaaaaaattatgtaCAACTTTTTAATATTATATAATTGACATG
TATGTCGAGGTCTTCTAAATTTGTAAGATTTTACCACATAAACTATAAGA
GTCAATCCCGCTAATACAAAATATTCTATTGAATATATATGCGCTACCAG
CGGTAGCTAGAAATTGGATATTTTTTCCTACTGACTAGAATAAAGCAGTA
AGATGTAAGGGTGGTATCATTACACACAGTCACTTTTTAGTGTGCTGTTA
GTTCATAAAGTCTTAAAGTTCTTTGAGGCTCGTTCAATCTTTGTCGGTCA
GAATGCAACATATCAGAAATTTCTAAGCGCTTTGacaattttgaatcttt
tttcattcattgaattttcttttgttatttttcttacCATTTGTAGTCTA
TTTGCAATTCATTGAACAAATTCCCTTTTAGTTGGGACGTCTACTTTGGA
CGTTACCTTCAAGCGCAATACTCCAGTCAAAAGATACGCGAGACTTAAGG
TAACCACACGAAATAAAGATGGTAGCTTCTAAATCTCACTTCGTTCATCA
TGTATATCGGTTGTGACTGTGTTACTACTGCGTGTGTCAAGGAGCGCGTT
GTTAGTGTCCGAACGTGTTCGCGTGATACTGTGACGGCGTGAACGTGATT
CGTAGTAAACCTTAACGAAGTAGATGAACGGGTTGATGAGAGAGTTCAAT
GTGATGAGGAGATTCGATGAATGGTGGTAAAGGTCGGCGTCCAGGTAGCC
GACAGTGATCGGGAGGATGCAAGCGACGAAAGAAATCCCGATGAATAAGC
ATAAGATTGTGAGACGTCGCAAACGACGGTCTTGTGATTCATTGCTGAAG
GTCTGCTTGTTTTTGCGACGTTGTTGGAGTAGAAGGTACGCGATATAGAC
ATACGTGACGAATACTAAAATTGCAGATCCGGCAAATACAACACCGCGAA
TAAAGGTACCGATTTCTTCTTGAGTTGATAAAATGTTGAGGGCTGAAAAT
AGGACGGTCAATGTTAATGAGAGACACCAGATTAAGGAGATGGTACCACA
TTTCATTTTGAAGGTTGTAAAGATATAATATTTGCGCGGGAACTTGATTG
CCCATAAGCGTTCAACAGCAACAGAAATGACGTGAAAGATGGATGCGAAG
ATGGAAAATACGAAGACAGAATCAAAACACATGTCGACGATTTTGCTGAA
AGCCGTTTGTTCTTGGTTCATCATACCGGTGAGGTGTTCATGCATGATGT
AAGAGTCGGTGAGAAGCATGACCAACCCACTGATGAGATCTGATATGGAG
AGACTGAGCAACAGGTGATCAATACGGTCAATGGATGACCATTTACGGAA
GATGATGAGTTGCTGAGCAAAATTGGCAATAATGACCATCACATCTAAAA
CGATGGCCGGGATGAACCATTCTAAAACCATTATTGTTGTGCTCTTGTTT
TCTTTGTATGATCTAGAAGTTGCTGTTAGATTGATTGAAACTCCTATTTG
AATGCGAGTCTGACTTCTTGTTGAGCTTGTAACTTACCAAATTTCCAAAT
GATGAAGTTTCGAAACAGTTTTATTTGCTGATCGAATTATTTAACTTGAC
TTGATTCCAAGCggatttgatttaattttgtttgCACTAAACGAGAAAAA
TGCCAAAAGATTCATTAAGAATATGCAAACATGGTATAATTTGATTGTTA
ATCA Run BLAST on NCBI protein sequence of TCONS_00060564-protein >TCONS_00060564-protein ID=TCONS_00060564-protein|Name=TCONS_00060564-protein|organism=Clytia hemisphaerica|type=polypeptide|length=300bp
MVLEWFIPAIVLDVMVIIANFAQQLIIFRKWSSIDRIDHLLLSLSISDLI
SGLVMLLTDSYIMHEHLTGMMNQEQTAFSKIVDMCFDSVFVFSIFASIFH
VISVAVERLWAIKFPRKYYIFTTFKMKCGTISLIWCLSLTLTVLFSALNI
LSTQEEIGTFIRGVVFAGSAILVFVTYVYIAYLLLQQRRKNKQTFSNESQ
DRRLRRLTILCLFIGISFVACILPITVGYLDADLYHHSSNLLITLNSLIN
PFIYFVKVYYESRSRRHSITRTRSDTNNALLDTRSSNTVTTDIHDERSEI Run BLAST on NCBI transcript from alignment at scaffold_344:212723..214676 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060564 ID=TCONS_00060564|Name=TCONS_00060564|organism=Clytia hemisphaerica|type=transcript|length=1954bp|location=Sequence derived from alignment at scaffold_344:212723..214676 (Clytia hemisphaerica)
TGATTAACAATCAAATTATACCATGTTTGCATATTCTTAATGAATCTTTT
GGCATTTTTCTCGTTTAGTGcaaacaaaattaaatcaaatccGCTTGGAA
TCAAGTCAAGTTAAATAATTCGATCAGCAAATAAAACTGTTTCGAAACTT
CATCATTTGGAAATTTGGTAAGTTACAAGCTCAACAAGAAGTCAGACTCG
CATTCAAATAGGAGTTTCAATCAATCTAACAGCAACTTCTAGATCATACA
AAGAAAACAAGAGCACAACAATAATGGTTTTAGAATGGTTCATCCCGGCC
ATCGTTTTAGATGTGATGGTCATTATTGCCAATTTTGCTCAGCAACTCAT
CATCTTCCGTAAATGGTCATCCATTGACCGTATTGATCACCTGTTGCTCA
GTCTCTCCATATCAGATCTCATCAGTGGGTTGGTCATGCTTCTCACCGAC
TCTTACATCATGCATGAACACCTCACCGGTATGATGAACCAAGAACAAAC
GGCTTTCAGCAAAATCGTCGACATGTGTTTTGATTCTGTCTTCGTATTTT
CCATCTTCGCATCCATCTTTCACGTCATTTCTGTTGCTGTTGAACGCTTA
TGGGCAATCAAGTTCCCGCGCAAATATTATATCTTTACAACCTTCAAAAT
GAAATGTGGTACCATCTCCTTAATCTGGTGTCTCTCATTAACATTGACCG
TCCTATTTTCAGCCCTCAACATTTTATCAACTCAAGAAGAAATCGGTACC
TTTATTCGCGGTGTTGTATTTGCCGGATCTGCAATTTTAGTATTCGTCAC
GTATGTCTATATCGCGTACCTTCTACTCCAACAACGTCGCAAAAACAAGC
AGACCTTCAGCAATGAATCACAAGACCGTCGTTTGCGACGTCTCACAATC
TTATGCTTATTCATCGGGATTTCTTTCGTCGCTTGCATCCTCCCGATCAC
TGTCGGCTACCTGGACGCCGACCTTTACCACCATTCATCGAATCTCCTCA
TCACATTGAACTCTCTCATCAACCCGTTCATCTACTTCGTTAAGGTTTAC
TACGAATCACGTTCACGCCGTCACAGTATCACGCGAACACGTTCGGACAC
TAACAACGCGCTCCTTGACACACGCAGTAGTAACACAGTCACAACCGATA
TACATGATGAACGAAGTGAGATTTAGAAGCTACCATCTTTATTTCGTGTG
GTTACCTTAAGTCTCGCGTATCTTTTGACTGGAGTATTGCGCTTGAAGGT
AACGTCCAAAGTAGACGTCCCAACTAAAAGGGAATTTGTTCAATGAATTG
CAAATAGACTACAAATGgtaagaaaaataacaaaagaaaattcaatgaat
gaaaaaagattcaaaattgtCAAAGCGCTTAGAAATTTCTGATATGTTGC
ATTCTGACCGACAAAGATTGAACGAGCCTCAAAGAACTTTAAGACTTTAT
GAACTAACAGCACACTAAAAAGTGACTGTGTGTAATGATACCACCCTTAC
ATCTTACTGCTTTATTCTAGTCAGTAGGAAAAAATATCCAATTTCTAGCT
ACCGCTGGTAGCGCATATATATTCAATAGAATATTTTGTATTAGCGGGAT
TGACTCTTATAGTTTATGTGGTAAAATCTTACAAATTTAGAAGACCTCGA
CATACATGTCAATTATATAATATTAAAAAGTTGtacataattttttctaa
acataTCAACCTTATAATAACAGTCAACTTAGAGCCACGCCCTAACAACT
AAAACAAGCGCACCGTATATTGCTTTTAGCTGATTGAATCGTTTATCATT
GCCTCTCAAGTTTTAACACACTGTTTCTCCTGTTACAATTATAGCCCAGT
GGCAAACAATTTTAAGCCACAGAGATGCCAATTCTAAGAGGATAGAATAT
TTCTTGGCTGTTAATTTCTTGCTTCTTTTTCAGTTTCctataaatttatt
tata Coding sequence (CDS) from alignment at scaffold_344:212723..214676 >TCONS_00060564 ID=TCONS_00060564|Name=TCONS_00060564|organism=Clytia hemisphaerica|type=CDS|length=903bp|location=Sequence derived from alignment at scaffold_344:212723..214676 (Clytia hemisphaerica)
ATGGTTTTAGAATGGTTCATCCCGGCCATCGTTTTAGATGTGATGGTCAT
TATTGCCAATTTTGCTCAGCAACTCATCATCTTCCGTAAATGGTCATCCA
TTGACCGTATTGATCACCTGTTGCTCAGTCTCTCCATATCAGATCTCATC
AGTGGGTTGGTCATGCTTCTCACCGACTCTTACATCATGCATGAACACCT
CACCGGTATGATGAACCAAGAACAAACGGCTTTCAGCAAAATCGTCGACA
TGTGTTTTGATTCTGTCTTCGTATTTTCCATCTTCGCATCCATCTTTCAC
GTCATTTCTGTTGCTGTTGAACGCTTATGGGCAATCAAGTTCCCGCGCAA
ATATTATATCTTTACAACCTTCAAAATGAAATGTGGTACCATCTCCTTAA
TCTGGTGTCTCTCATTAACATTGACCGTCCTATTTTCAGCCCTCAACATT
TTATCAACTCAAGAAGAAATCGGTACCTTTATTCGCGGTGTTGTATTTGC
CGGATCTGCAATTTTAGTATTCGTCACGTATGTCTATATCGCGTACCTTC
TACTCCAACAACGTCGCAAAAACAAGCAGACCTTCAGCAATGAATCACAA
GACCGTCGTTTGCGACGTCTCACAATCTTATGCTTATTCATCGGGATTTC
TTTCGTCGCTTGCATCCTCCCGATCACTGTCGGCTACCTGGACGCCGACC
TTTACCACCATTCATCGAATCTCCTCATCACATTGAACTCTCTCATCAAC
CCGTTCATCTACTTCGTTAAGGTTTACTACGAATCACGTTCACGCCGTCA
CAGTATCACGCGAACACGTTCGGACACTAACAACGCGCTCCTTGACACAC
GCAGTAGTAACACAGTCACAACCGATATACATGATGAACGAAGTGAGATT
TAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060564-exon-scaffold_344-1491911889:212723..214676 | TCONS_00060564-exon-scaffold_344-1491911889:212723..214676 | Clytia hemisphaerica | exon |
| TCONS_00060564-exon-scaffold_344-1510915933:212723..214676 | TCONS_00060564-exon-scaffold_344-1510915933:212723..214676 | Clytia hemisphaerica | exon |
| TCONS_00060564-exon-scaffold_344-1575043694:212723..214676 | TCONS_00060564-exon-scaffold_344-1575043694:212723..214676 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_344 | supercontig | scaffold_344:212723..214676 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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