TCONS_00060558 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060558
Unique NameTCONS_00060558
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length800

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060558 ID=TCONS_00060558|Name=TCONS_00060558|organism=Clytia hemisphaerica|type=transcript|length=800bp
TTGGATGTTTAGATGCGTAGACGCTTGAAGAGTTGCTCAAAGTCTTTATC
GTCACTTTCGTCATACTCGACATTGGACGCAGATTTTCTCTTTCGTCCTT
TTGCGACGTTTGATTTAGCATCGCTAAGTGTTTTAGTGACATAGTCGGTT
GGCGTGAATAGCTTGTTGACTTTGGTTTCTCCTGAGCGGACATCTGATGA
GATTGTCATTTTATTGGTGAGCTGGTCTGCTAAATCTTTGAAGACTTTGT
CATCTGTAGATTTGTAGACTGTTGATTCACCTATTTCGACACGAGGAAAT
GAACTTTGTTGAATGAGATCATTCACGTCTCGGCGTTTTGCTTTGATAAC
AACACGAGCCTCAGTAAAaggttttgatttgaaaacggCGTTCTTGTATG
AAACTTTCAGAACACGGTGAtacaatttcaaattgatttgagAACGCCCA
GTGTTCAACTTCTTTATGTTTGAATCCTCCAATGCAAATGCCATTGCACG
AGGATTTTTGGATTTTCCGATCTGATGAAATTCATCTCGggattcaattt
ttgaatgcaaATCGACAACAGATTTGCGTTTCGCggtgaaaacttttgca
cgAGTGATATCGACCTTTGTCTCAGAAGCAATCTTGAACAAAGATTTACT
CGAAGCATtcgaattttcaccaaagactttcattttactcaaaatacaca
tttttgcAAGACTTTCTGCGACTTGATTCGACagaagaaatatttgaaaa
taactttctgaattgaaagaaaacaattgacgtcaaatattttcacGATT
Run BLAST on NCBI

transcript from alignment at scaffold_344:369153..370595-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060558 ID=TCONS_00060558|Name=TCONS_00060558|organism=Clytia hemisphaerica|type=transcript|length=1443bp|location=Sequence derived from alignment at scaffold_344:369153..370595- (Clytia hemisphaerica)
TTGGATGTTTAGATGCGTAGACGCTTGAAGAGTTGCTCAAAGTCTTTATC
GTCACTTTCGTCATACTCGACATTGGACGCAGATTTTCTCTTTCGTCCTT
TTGCGACGTTTGATTTAGCATCGCTAAGTGTTTTAGTGACATAGTCGGTT
GGCGTGAATAGCTTGTTGACTTTGGTTTCTCCTGAGCGGACATCTGATGA
GATTGTCATTTTATTGGTGAGCTGGTCTGCTAAATCTTTGAAGACTTTGT
CTCCACGGGATTAAGGCGGGGTCAAAATGCTTGCAACGTTACAAATCATT
TTCAGAAGCTCATTTTGGGCTCAAACAAAGCGTATGACTAAGTAGAATAG
GATTCAGTCTAGGCAGATGTTTTATCATTTTGAAATTTTGCGTAATTCGC
AAAAATCCTCAATTTTGCGCTATTTTGATGACGTCATAAAAATTGAAATC
CCAATAACTTTTGATAAAATTATCAAAATAATTTCAAATTTTAACCAAAG
ATGCATATTATTAATGTTTTCAGAATTAAATAAAAAAATTTATAAAATTT
GATGACGCCATCACTTTTAAGGCAAAAAACTAAAATCCTTAAAAAATGCT
GACGTCATCAAGATTTTGAAAATTTTTGAACATTTTTTGAAAATTTGCAT
TGAAATGCATCTTTGGTGAAAGTTTGAAATTATTTTAATGATTCTATCAA
AAGTTATTTGAATTTCAATTTTTATGACGTCATCAAAATAGCGCAAAATT
GAGGATTTTTGCGAATTACGCAAAATTTCAAAATGAAAAAACATCTGCCT
CGACTGAATCTTATTCTATGAGCCCAAAACGAGCTTCTGAAAATGATTTG
TAACGTTGCAAGAATTTTGACCCCGCCTTAATCCCGTGGAGGTCATCTGT
AGATTTGTAGACTGTTGATTCACCTATTTCGACACGAGGAAATGAACTTT
GTTGAATGAGATCATTCACGTCTCGGCGTTTTGCTTTGATAACAACACGA
GCCTCAGTAAAAGGTTTTGATTTGAAAACGGCGTTCTTGTATGAAACTTT
CAGAACACGGTGATACAATTTCAAATTGATTTGAGAACGCCCAGTGTTCA
ACTTCTTTATGTTTGAATCCTCCAATGCAAATGCCATTGCACGAGGATTT
TTGGATTTTCCGATCTGATGAAATTCATCTCGGGATTCAATTTTTGAATG
CAAATCGACAACAGATTTGCGTTTCGCGGTGAAAACTTTTGCACGAGTGA
TATCGACCTTTGTCTCAGAAGCAATCTTGAACAAAGATTTACTCGAAGCA
TTCGAATTTTCACCAAAGACTTTCATTTTACTCAAAATACACATTTTTGC
AAGACTTTCTGCGACTTGATTCGACAGAAGAAATATTTGAAAATAACTTT
CTGAATTGAAAGAAAACAATTGACGTCAAATATTTTCACGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038089XLOC_038089Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060558-exon-scaffold_344-1575043694:370348..370595TCONS_00060558-exon-scaffold_344-1575043694:370348..370595Clytia hemisphaericaexon
TCONS_00060558-exon-scaffold_344-1575043694:369153..369704TCONS_00060558-exon-scaffold_344-1575043694:369153..369704Clytia hemisphaericaexon
TCONS_00060558-exon-scaffold_344-1510915933:370348..370595TCONS_00060558-exon-scaffold_344-1510915933:370348..370595Clytia hemisphaericaexon
TCONS_00060558-exon-scaffold_344-1510915933:369153..369704TCONS_00060558-exon-scaffold_344-1510915933:369153..369704Clytia hemisphaericaexon
TCONS_00060558-exon-scaffold_344-1491911889:370348..370595TCONS_00060558-exon-scaffold_344-1491911889:370348..370595Clytia hemisphaericaexon
TCONS_00060558-exon-scaffold_344-1491911889:369153..369704TCONS_00060558-exon-scaffold_344-1491911889:369153..369704Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_344supercontigscaffold_344:369153..370595 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0708523	0	0.0664971	0	0	0	0.0722532	0	0.187977	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.218039	0	0.0878467	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060558 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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