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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060558 ID=TCONS_00060558|Name=TCONS_00060558|organism=Clytia hemisphaerica|type=transcript|length=800bp
TTGGATGTTTAGATGCGTAGACGCTTGAAGAGTTGCTCAAAGTCTTTATC
GTCACTTTCGTCATACTCGACATTGGACGCAGATTTTCTCTTTCGTCCTT
TTGCGACGTTTGATTTAGCATCGCTAAGTGTTTTAGTGACATAGTCGGTT
GGCGTGAATAGCTTGTTGACTTTGGTTTCTCCTGAGCGGACATCTGATGA
GATTGTCATTTTATTGGTGAGCTGGTCTGCTAAATCTTTGAAGACTTTGT
CATCTGTAGATTTGTAGACTGTTGATTCACCTATTTCGACACGAGGAAAT
GAACTTTGTTGAATGAGATCATTCACGTCTCGGCGTTTTGCTTTGATAAC
AACACGAGCCTCAGTAAAaggttttgatttgaaaacggCGTTCTTGTATG
AAACTTTCAGAACACGGTGAtacaatttcaaattgatttgagAACGCCCA
GTGTTCAACTTCTTTATGTTTGAATCCTCCAATGCAAATGCCATTGCACG
AGGATTTTTGGATTTTCCGATCTGATGAAATTCATCTCGggattcaattt
ttgaatgcaaATCGACAACAGATTTGCGTTTCGCggtgaaaacttttgca
cgAGTGATATCGACCTTTGTCTCAGAAGCAATCTTGAACAAAGATTTACT
CGAAGCATtcgaattttcaccaaagactttcattttactcaaaatacaca
tttttgcAAGACTTTCTGCGACTTGATTCGACagaagaaatatttgaaaa
taactttctgaattgaaagaaaacaattgacgtcaaatattttcacGATT Run BLAST on NCBI transcript from alignment at scaffold_344:369153..370595- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060558 ID=TCONS_00060558|Name=TCONS_00060558|organism=Clytia hemisphaerica|type=transcript|length=1443bp|location=Sequence derived from alignment at scaffold_344:369153..370595- (Clytia hemisphaerica)
TTGGATGTTTAGATGCGTAGACGCTTGAAGAGTTGCTCAAAGTCTTTATC
GTCACTTTCGTCATACTCGACATTGGACGCAGATTTTCTCTTTCGTCCTT
TTGCGACGTTTGATTTAGCATCGCTAAGTGTTTTAGTGACATAGTCGGTT
GGCGTGAATAGCTTGTTGACTTTGGTTTCTCCTGAGCGGACATCTGATGA
GATTGTCATTTTATTGGTGAGCTGGTCTGCTAAATCTTTGAAGACTTTGT
CTCCACGGGATTAAGGCGGGGTCAAAATGCTTGCAACGTTACAAATCATT
TTCAGAAGCTCATTTTGGGCTCAAACAAAGCGTATGACTAAGTAGAATAG
GATTCAGTCTAGGCAGATGTTTTATCATTTTGAAATTTTGCGTAATTCGC
AAAAATCCTCAATTTTGCGCTATTTTGATGACGTCATAAAAATTGAAATC
CCAATAACTTTTGATAAAATTATCAAAATAATTTCAAATTTTAACCAAAG
ATGCATATTATTAATGTTTTCAGAATTAAATAAAAAAATTTATAAAATTT
GATGACGCCATCACTTTTAAGGCAAAAAACTAAAATCCTTAAAAAATGCT
GACGTCATCAAGATTTTGAAAATTTTTGAACATTTTTTGAAAATTTGCAT
TGAAATGCATCTTTGGTGAAAGTTTGAAATTATTTTAATGATTCTATCAA
AAGTTATTTGAATTTCAATTTTTATGACGTCATCAAAATAGCGCAAAATT
GAGGATTTTTGCGAATTACGCAAAATTTCAAAATGAAAAAACATCTGCCT
CGACTGAATCTTATTCTATGAGCCCAAAACGAGCTTCTGAAAATGATTTG
TAACGTTGCAAGAATTTTGACCCCGCCTTAATCCCGTGGAGGTCATCTGT
AGATTTGTAGACTGTTGATTCACCTATTTCGACACGAGGAAATGAACTTT
GTTGAATGAGATCATTCACGTCTCGGCGTTTTGCTTTGATAACAACACGA
GCCTCAGTAAAAGGTTTTGATTTGAAAACGGCGTTCTTGTATGAAACTTT
CAGAACACGGTGATACAATTTCAAATTGATTTGAGAACGCCCAGTGTTCA
ACTTCTTTATGTTTGAATCCTCCAATGCAAATGCCATTGCACGAGGATTT
TTGGATTTTCCGATCTGATGAAATTCATCTCGGGATTCAATTTTTGAATG
CAAATCGACAACAGATTTGCGTTTCGCGGTGAAAACTTTTGCACGAGTGA
TATCGACCTTTGTCTCAGAAGCAATCTTGAACAAAGATTTACTCGAAGCA
TTCGAATTTTCACCAAAGACTTTCATTTTACTCAAAATACACATTTTTGC
AAGACTTTCTGCGACTTGATTCGACAGAAGAAATATTTGAAAATAACTTT
CTGAATTGAAAGAAAACAATTGACGTCAAATATTTTCACGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060558-exon-scaffold_344-1575043694:370348..370595 | TCONS_00060558-exon-scaffold_344-1575043694:370348..370595 | Clytia hemisphaerica | exon |
| TCONS_00060558-exon-scaffold_344-1575043694:369153..369704 | TCONS_00060558-exon-scaffold_344-1575043694:369153..369704 | Clytia hemisphaerica | exon |
| TCONS_00060558-exon-scaffold_344-1510915933:370348..370595 | TCONS_00060558-exon-scaffold_344-1510915933:370348..370595 | Clytia hemisphaerica | exon |
| TCONS_00060558-exon-scaffold_344-1510915933:369153..369704 | TCONS_00060558-exon-scaffold_344-1510915933:369153..369704 | Clytia hemisphaerica | exon |
| TCONS_00060558-exon-scaffold_344-1491911889:370348..370595 | TCONS_00060558-exon-scaffold_344-1491911889:370348..370595 | Clytia hemisphaerica | exon |
| TCONS_00060558-exon-scaffold_344-1491911889:369153..369704 | TCONS_00060558-exon-scaffold_344-1491911889:369153..369704 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_344 | supercontig | scaffold_344:369153..370595 - |
Blast
The following BLAST results are available for this feature:
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