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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060556 ID=TCONS_00060556|Name=TCONS_00060556|organism=Clytia hemisphaerica|type=transcript|length=1324bpRun BLAST on NCBI transcript from alignment at scaffold_344:309201..318633- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060556 ID=TCONS_00060556|Name=TCONS_00060556|organism=Clytia hemisphaerica|type=transcript|length=9433bp|location=Sequence derived from alignment at scaffold_344:309201..318633- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00060556 vs. Swiss-Prot (Human)
Match: GSHR (Glutathione reductase, mitochondrial OS=Homo sapiens GN=GSR PE=1 SV=2) HSP 1 Score: 382.874 bits (982), Expect = 2.470e-127 Identity = 213/377 (56.50%), Postives = 264/377 (70.03%), Query Frame = 1
Query: 214 VKKFDYLVVXXXXXXXXXXXXXTEFCKSDGSKLKVAVIEEKRLGGTCVNVGCVPKKVMFNTALHAEMLHDMKDYGFDVTYNGFDWSHVKTKRDAYVKRLNGMFATNLDKAEVEHIDGHAKFDSDG--VCHVGDLQLQGEHTMIATGGKPLVPN---VPGAEYGITSDGFFELEKLPKKTVVVGAGYIAVELAAILQTLGSEVHHFIRNDKVLRNFDSLISESITNEHENNVGVKLHKFVDSKSMKITKCDNTGLLSIETLAGPNKETLQ--INDAECLLWAVGRVPNTTDLGLEGLGIKMNEKQEIVVDEFQNTSKPNFYALGDVCGKALLTPVAIAAGRRLSHRLFNNELDSKLNYDNIPTVVFSHPTIGTIGLTE 1323
V +DYLV+GGGSGG+ASARRA E + AV+E +LGGTCVNVGCVPKKVM+NTA+H+E +HD DYGF F+W +K KRDAYV RLN ++ NL K+ +E I GHA F SD V + H +IATGG P P+ +PGA GITSDGFF+LE+LP ++V+VGAGYIAVE+A IL LGS+ IR+DKVLR+FDS+IS + T E EN GV++ KF K +K T +GL A P + + I D +CLLWA+GRVPNT DL L LGI+ ++K I+VDEFQNT+ YA+GDVCGKALLTPVAIAAGR+L+HRLF + DSKL+Y+NIPTVVFSHP IGT+GLTE
Sbjct: 62 VASYDYLVIGGGSGGLASARRAAEL------GARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHESQIPGASLGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELEN-AGVEVLKFSQVKEVKKTL---SGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGLTE 428 The following BLAST results are available for this feature:
BLAST of TCONS_00060556 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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