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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060549 ID=TCONS_00060549|Name=TCONS_00060549|organism=Clytia hemisphaerica|type=transcript|length=3558bpRun BLAST on NCBI transcript from alignment at scaffold_344:117797..143321- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060549 ID=TCONS_00060549|Name=TCONS_00060549|organism=Clytia hemisphaerica|type=transcript|length=25525bp|location=Sequence derived from alignment at scaffold_344:117797..143321- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00060549 vs. Swiss-Prot (Human)
Match: PRP4B (Serine/threonine-protein kinase PRP4 homolog OS=Homo sapiens GN=PRPF4B PE=1 SV=3) HSP 1 Score: 528.094 bits (1359), Expect = 6.064e-168 Identity = 243/380 (63.95%), Postives = 315/380 (82.89%), Query Frame = 1
Query: 2116 DMFADEGSNMFSENFDSPA--SGGVKAXXXXXXXXXXXXXXXAEGYYKLRVGEMMDGRYNVYGYTGQGVFSNVVRARDTLKANMEVAIKIMRSNEIMSKQGKQEMKILQQLNEADPDDKYHCLRMHRHFDHKQHLCLVFESLSMNLREVLKKYGNNVGLHIKAVRSYTQQMLFALRLLKKCGIIHADIKPDNILVNESKSMLKLCDFGSASSLSDNDITPYLVSRFYRAPEIIIGRKYDTMIDLWSIACTVFEIYSGKILFSGKTNNEMLKLMFDVKGRMPNKVVKKAMFREKHFDESFNFMFIETDKITQKEKFSIINYGTTPSKDLLEMLIGRHNLTDEAKKKVIQLRDLIDKMLTLDPAKRISVSQALQHPFITEKI 3249
DMF E +MF+ FDS + G+ +++ N D+ DAEGYY++ +GE++D RYNVYGYTGQGVFSNVVRARD +AN EVA+KI+R+NE+M K G +E++ L++LN+ADPDDK+HCLR+ RHF HKQHLCLVFE LSMNLREVLKKYG +VGLHIKAVRSY+QQ+ AL+LLK+C I+HADIKPDNILVNESK++LKLCDFGSAS ++DNDITPYLVSRFYRAPEIIIG+ YD ID+WS+ CT++E+Y+GKILF GKTNN MLKL D+KG+MPNK+++K +F+++HFD++ NFM+IE DK+T++EK ++++ P+KDLL LIG L ++ +KKV QL+DL+D++L LDPAKRIS++QALQH FI EKI
Sbjct: 631 DMFT-ESDDMFAAYFDSARLRAAGI-GKDFKENPNLRDNWTDAEGYYRVNIGEVLDKRYNVYGYTGQGVFSNVVRARDNARANQEVAVKIIRNNELMQKTGLKELEFLKKLNDADPDDKFHCLRLFRHFYHKQHLCLVFEPLSMNLREVLKKYGKDVGLHIKAVRSYSQQLFLALKLLKRCNILHADIKPDNILVNESKTILKLCDFGSASHVADNDITPYLVSRFYRAPEIIIGKSYDYGIDMWSVGCTLYELYTGKILFPGKTNNHMLKLAMDLKGKMPNKMIRKGVFKDQHFDQNLNFMYIEVDKVTEREKVTVMST-INPTKDLLADLIGCQRLPEDQRKKVHQLKDLLDQILMLDPAKRISINQALQHAFIQEKI 1007 The following BLAST results are available for this feature:
BLAST of TCONS_00060549 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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