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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060542 ID=TCONS_00060542|Name=TCONS_00060542|organism=Clytia hemisphaerica|type=transcript|length=940bp GGAGAAGACACTTCAAGTATTTTAAGTAAAGACCAAACAGATCCAGACAT TTGGTCAGGAAAAAAAGCATCATGtacacaaataaaaaaaaattatggca GTACTGCAGCGAGAGAATGGATTCACCCGTGGCGTGATTCGAGAAGAGTC AAAGTCAACTGTGCAGGTGATCAAATGTATATGGCACAAACTTCAAAACT GACAGAAGCCGGTATTCCTGTCATCACGGAAATCCCGGAGTTGTATGACG GACTGGAATTTCcagacaataatttcaaaatgggGCGCAAAGCAATTGAA CAATATTATAAATTAATCAGGTTTACCAAGTATCGATTTGGATGTTTCAA CGGATCTATATATTCAGATTTCATTTTTAGTCGACACAATTATCAAAAAT ATTTCACATTCATGTCGGACGTAAGGCCAGCTGCGTGTCAATGGTATGGT TGGGGGAGCGACGACTTTGATTGTACAGAACATGTTGATGGTAGATTTTC CTCACCGTACATTAACTCTGATGACCGGCTCTATGATCGTATTTATAACC GGACGAATGGGGAAACCTATTCATTTCACGGTGACCATTGGGCATGTTTC GGTCCCAGTAAACCTATCCTAGATCCTGATATCAGTTTTGATATTCGAGA GTTTTCATAGAACACCCGAAGAAATCTGAAACACCAAAAGGGATCACTAA Tagatttttaaataagagtgatatcgtttgattactcatcaattttaatt catttcACATTGttttgacacgaatgtggagcaagataaaaataaaaaca tattttgcttatatcagcacaatatgaCAATGGGCAGACACTGTACTGAT ATggaacatgtgtctgatatgaaacggggacACTTATGTAAAACTTTAAG TCCTTAGCCAGCCCTGCTACAAAATGATGCATTTATCTAG Run BLAST on NCBI protein sequence of TCONS_00060542-protein >TCONS_00060542-protein ID=TCONS_00060542-protein|Name=TCONS_00060542-protein|organism=Clytia hemisphaerica|type=polypeptide|length=219bp
GEDTSSILSKDQTDPDIWSGKKASCTQIKKNYGSTAAREWIHPWRDSRRV KVNCAGDQMYMAQTSKLTEAGIPVITEIPELYDGLEFPDNNFKMGRKAIE QYYKLIRFTKYRFGCFNGSIYSDFIFSRHNYQKYFTFMSDVRPAACQWYG WGSDDFDCTEHVDGRFSSPYINSDDRLYDRIYNRTNGETYSFHGDHWACF GPSKPILDPDISFDIREFS Run BLAST on NCBI transcript from alignment at scaffold_344:45384..50497- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060542 ID=TCONS_00060542|Name=TCONS_00060542|organism=Clytia hemisphaerica|type=transcript|length=5114bp|location=Sequence derived from alignment at scaffold_344:45384..50497- (Clytia hemisphaerica) GGTAAGAATCAACCAATTTCAATCATTTTATTTTTTATATTTTTTTGCAA
AGAAGAAATTATAAATATCTTAAATGACTTTTTAAACAATACACGGATTT
CGAATTAGATTTTTGCGTAGCTTTTGCTTTGAACTCATGTAAATTTGCAC
AAAAAAAAACAAAAAACAAGTAAACAAAACAGAAAGTGGCCGTGCAAGAA
GCAATTTTAGCTCATTTTTCCATTTTGACATACTCTATGGGTCACTGTAA
ACATAAAAATAATAAAGCAATTGCAGAATCTTATTTCTTTCATCAATTTA
AAAATAGGAAAACATTTTTTGAATGAATAAAAAGTGATTTTTAAGGGNAA
TTTAAAAATAGGAAAACGTTTTTTGAATAAATAAAAAGTGATTTTTAAGG
GAACTTTTGGATTGTTATAGGTAAGTACGATATTTATCTAGGGTTAACAT
AGTAGACAGGACCCAAATAGTCCAAATGAAACTATTTTATAACTGAACCC
TTGTATTCTCAGGAGAAGACACTTCAAGTATTTTAAGTAAAGACCAAACA
GATCCAGGTAAATGGCTTTCCAAATCTTATCCATTTTAATACAAAGAGAC
TGAAGAAGAAATTCGACCTTTAAAAGTTTCTCACTCGTCTGTGTTGTAAA
CAGACCCGATATCCACAGAAAGTTTAACAATACACCTTTTTCCGGTTAGC
CGTTTCGTATAAAAAGTCACCAAAATTTCGAGTAAACAAACTGATTGGCT
AAAAAGGCAAAAACATAAACAAAAAAATGTACGAGGAAAATGTGCTTTCT
GTGCTCTTACTCTGGACATTTTTTTGTTTATGTTTTTGCTTTCTTTTAGC
CAATGAGATGGTTTGTTTACTCGAAATTTTGGTGACTTTTTATACGAAGC
AGCTAACCGTAAAAAGGTGTATTAATTTCCGTATTACGCAACGCTTTAAT
CGATTTTGATACGATTGCAGTGGTAAATTGAAAGCCCGCCCCCTAGTCAG
ACTTTTCCAAACAATTCGAACGATTTTTCACCCAAAATTCCCCTGTTCCC
CGAAAAATCTCTGTGTGAATGTGCGAGTCCAAGAAACATTTACGTGGCTG
CATGGATTTAAAATCCAAGTTGGCTAACCATGGATTAATAATAATAAAAA
AAACGAAAAGCTTCCGTTAAAAAAAATGATTTAAGTTAAGTCCGTCTCAA
TATAATTTACAGTGGAGACAATAAAAGCTATAACTTTTGATAAAATTCCA
ATTAGATATGTAGCGGTTTTGTGCTTGTACAGGAGTGGAATATTATGATA
AAAAAAAAATTCAAAAAAGATCGGAAAATGAAGATCGAAAACGAAAAAGA
ATAAATCAACTTCTTCAATAATTGTGCTATAATTATCATTTTCACACGAG
TGACTCTTTGATCTTAGAGCATAATGTGAAAACGTTTTTTCAAGAATTTA
TTCCATCGAAAAATATAGTCCACAGTTTATCATTGATTGACTTTAAAAAC
CATTAAAAAACAACAAAAAAAGAGCCCTTTTTAAGTCAACCAGGGCAAAG
TTTTAAGCTGTATTTTTTGACTGAATGAATATATTTCTTTTTTACATTTA
TGATGTTTTAAATTTTTTTGATTTCACGTTTTTAATTTCTGATATAAAAA
TGAAGATCATAGCATTATTCTACAAGAAGTTGATTTTCTTCTTCTTCATT
TTTCATCTTCGTTTTTCCATTTTTTTCCATTTTTTTCTTTTTTAAATGAT
ATTCCACTCCGGATTATCTTTTCGACGAGCACAAAACCGCTATCTAATTC
GAATTCTATCAAAAGTGACAACTTTTTTTGTCTCCGCTGCAAATTATATT
GAGACAGACGTTAGAAGAAATTAGTTTTAATTAAAATCTATTTCAAGTTT
AAATTTAATAATCTTTTGCTTGATGCTGTTTTGTCCGACATATCACACAA
TGAAATAGCAAAAATATTTGCTGAAATGTTTTTCGTTTTGGTAAGTTTTC
ATCTCATCGCATNAAAATATTTGCTGAAATGTTTTTCGTTTTGGCAAGTT
TCCATCTCATCGCATTTCAAATCGATTTCTTTTACTAGACATTTGGTCAG
GAAAAAAAGCATCATGTACACAAATAAAAAAAAATTATGGCAGTACTGCA
GCGAGAGAATGGATTCACCCGTGGCGTGATTCGAGAAGAGTCAAAGTCAA
CTGTGCAGGTATGTACATTTAAGATTTCACTACAAAGTCAACTGTGCAGG
TGTATACATTTTAGTCTTTACTACAAAGTCAACTGTGCAGGTATATACAT
TTTAACTTTAGACTTTACGACTTTTTGCGTGAACCTGTCAAATTTTTACA
TTAATTTGTTCATCTTCCGTCTTGGATCTTGTGACGTTTCAACCTTATTT
TGTCAAAGAAAGAAGCTTCATAAAGCCTGGCTAACAGCGTTGAGAAAAAG
CACGAACCTTAAACTTCCGGGGGTTTTTGCGGAAATTAGGTCGCAAAGGA
AATTTAGAAAGATATTATCAATCCGCGAAATATTCATAAATTTATTTCAA
TACTCAAGAAAATATGGCAATGACGAGACCTCATGGGAATTCTACGTTTC
AACCTCCTATTATCTTGGAACTAATTTTCGTGGGAACTAATTTTCGCGGT
CGAAAAAAAATATCTGAAAAATTGCATTTCGCGGGTTTTAATTTTCGCGG
TTTTTTTTCATTCTGGAATTTTCGCGGGCTTTAATTTTCGCGGTTTTGTC
CTTTTTTGGACAAATTTCGTTCATTTTCCTAGGGATTTTTCAAATTTTTC
GATAAAGTTGGAAAAAATTGTATTTCGCAGGAATCAATTTTCGCGGTTTT
TAGCTCTCAAAATTTTTCGCGGGCTAAAATTTTCGCTATTTTGACGAAAA
ACCGCGAAAAACACTAAAATTAATTCCCGTGAAAATTAGTTCCAATAAGG
TACTTGTCTCTATAGAACAGCTTTTGTGAACGTTTTTGAACCTTAATTCC
TTTGGGAAATCAAAATCGTTTTAAAACCAATGAATTTTTTAGAAACTTCA
CCATTAGCTACTGAACCGTTTATGTGTAACCTGAGATCAGATTGTGAATG
TTTTCTGCACACCACGCTGAAGCTCTAAAGGGATGTGTGAAAACAAACAA
TCTGACGAATATGCAATCTCGAAATCGTANNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNCTCAAGAATCTTGTTGTGCGCCGGAAAAATAAAAACTGATACGG
CGCCCTATTCATAAACACAATCGCGCAACTTTGTTGTCATTCCCAGCCCT
TTTAGACGAGCGCGATCCTTACGATTTCGAGATTGCATATTCGTCAGATT
GTTTGTTTTCACACATCCCTTTAGAGCTTCAGCGTGGTGTGAAGATAACA
TTCACAATCTGATCTCAGGTTACATTTGTGTGTCTCTCTCTTTTGTCCCT
GGGACAAATCATCGTGTCTTTTGGGTATTCCCCTCCCTTTCTGTCCCATG
AAAAAATAAAAGTAACCATGGGACACGCACTTTTTTTGTGTTGGTGGGAT
GGAGCATGTTGCATTGCACCAACGCGACTAAAACTTCTCATGTCCCCAAG
CCTTAACAATGTGTATTTCAACAACCAAAATGCATGATTTGACAGTAAAA
AGTCACAAATTCGTGAAAATACTGTCACCCAATAAGTGCCATCCGCCAAA
TTAAGTCGGTTGAGCTCAACTGCAAAATTTAATACCCTCGAAAATTAATC
CCATTAAAGTAGCTCCTAAATTCCATTAAATTCCAAATGATCCTACATTT
ACTTTAGGTGATCAAATGTATATGGCACAAACTTCAAAACTGACAGAAGC
CGGTATTCCTGTCATCACGGAAATCCCGGAGTTGTATGACGGACTGGAAT
TTCCAGACAATAATTTCAAAATGGGGCGCAAAGCAATTGAACAATATTAT
AAATTAATCAGGTTTACCAAGTATCGATTTGGATGTTTCAACGGATCTAT
ATATTCAGATTTCATTTTTAGTCGACACAATTATCAAAAGTAAGTATCAC
AGTCAAATTTATCAAACCGTTATATGAACAAATCTTCATCTAGAACTCTC
CATAACTCAGACAAATTTTAATTTCCCGTGTGTGTTCGAGTTATTGAGCA
GGCTCCACTCTATTCCCACACAATTTAATAAGCGACGGGGGATTATAAAT
TAGGGCGTAAGAGTAATTAATTATTCTTTTAAGTGAAACGTAAAGGCCTT
GTGATGTGCAACCAAATCAAAATAAAACATAAAACATTTTTCTTTAAACA
ATACATTTCATTATTCTTTTAGATATTTCACATTCATGTCGGACGTAAGG
CCAGCTGCGTGTCAATGGTATGGTTGGGGGAGCGACGACTTTGATTGTAC
AGAACATGTTGATGGTAGATTTTCCTCACCGTACATTAACTCTGATGACC
GGCTCTATGATCGTATTTATAACCGGACGAATGGGGAAACCTATTCATTT
CACGGTGACCATTGGGCATGTTTCGGTCCCAGTAAACCTATCCTAGATCC
TGATATCAGTTTTGATATTCGAGAGTTTTCATAGAACACCCGAAGAAATC
TGAAACACCAAAAGGGATCACTAATAGATTTTTAAATAAGAGTGATATCG
TTTGATTACTCATCAATTTTAATTCATTTCACATTGTTTTGACACGAATG
TGGAGCAAGATAAAAATAAAAACATATTTTGCTTATATCAGCACAATATG
ACAATGGGCAGACACTGTACTGATATGGAACATGTGTCTGATATGAAACG
GGGACACTTATGTAAAACTTTAAGTCCTTAGCCAGCCCTGCTACAAAATG
ATGCATTTATCTAG Coding sequence (CDS) from alignment at scaffold_344:45384..50497- >TCONS_00060542 ID=TCONS_00060542|Name=TCONS_00060542|organism=Clytia hemisphaerica|type=CDS|length=3300bp|location=Sequence derived from alignment at scaffold_344:45384..50497- (Clytia hemisphaerica) ATATTTCACATTCATGTCGGACGTAAGGCCAGCTGCGTGTCAATGGTATG GTTGGGGGAGCGACGACTTTGATTGTACAGAACATGTTGATGGTAGATTT TCCTCACCGTACATTAACTCTGATGACCGGCTCTATGATCGTATTTATAA CCGGACGAATGGGGAAACCTATTCATTTCACGGTGACCATTGGGCATGTT TCGGTCCCAGTAAACCTATCCTAGATCCTGATATCAGTTTTGATATTCGA GAGTTTTCATAGGTGATCAAATGTATATGGCACAAACTTCAAAACTGACA GAAGCCGGTATTCCTGTCATCACGGAAATCCCGGAGTTGTATGACGGACT GGAATTTCCAGACAATAATTTCAAAATGGGGCGCAAAGCAATTGAACAAT ATTATAAATTAATCAGGTTTACCAAGTATCGATTTGGATGTTTCAACGGA TCTATATATTCAGATTTCATTTTTAGTCGACACAATTATCAAAAACATTT GGTCAGGAAAAAAAGCATCATGTACACAAATAAAAAAAAATTATGGCAGT ACTGCAGCGAGAGAATGGATTCACCCGTGGCGTGATTCGAGAAGAGTCAA AGTCAACTGTGCAGGAGAAGACACTTCAAGTATTTTAAGTAAAGACCAAA CAGATCCAGGATATTTCACATTCATGTCGGACGTAAGGCCAGCTGCGTGT CAATGGTATGGTTGGGGGAGCGACGACTTTGATTGTACAGAACATGTTGA TGGTAGATTTTCCTCACCGTACATTAACTCTGATGACCGGCTCTATGATC GTATTTATAACCGGACGAATGGGGAAACCTATTCATTTCACGGTGACCAT TGGGCATGTTTCGGTCCCAGTAAACCTATCCTAGATCCTGATATCAGTTT TGATATTCGAGAGTTTTCATAGGTGATCAAATGTATATGGCACAAACTTC AAAACTGACAGAAGCCGGTATTCCTGTCATCACGGAAATCCCGGAGTTGT ATGACGGACTGGAATTTCCAGACAATAATTTCAAAATGGGGCGCAAAGCA ATTGAACAATATTATAAATTAATCAGGTTTACCAAGTATCGATTTGGATG TTTCAACGGATCTATATATTCAGATTTCATTTTTAGTCGACACAATTATC AAAAACATTTGGTCAGGAAAAAAAGCATCATGTACACAAATAAAAAAAAA TTATGGCAGTACTGCAGCGAGAGAATGGATTCACCCGTGGCGTGATTCGA GAAGAGTCAAAGTCAACTGTGCAGGAGAAGACACTTCAAGTATTTTAAGT AAAGACCAAACAGATCCAGGATATTTCACATTCATGTCGGACGTAAGGCC AGCTGCGTGTCAATGGTATGGTTGGGGGAGCGACGACTTTGATTGTACAG AACATGTTGATGGTAGATTTTCCTCACCGTACATTAACTCTGATGACCGG CTCTATGATCGTATTTATAACCGGACGAATGGGGAAACCTATTCATTTCA CGGTGACCATTGGGCATGTTTCGGTCCCAGTAAACCTATCCTAGATCCTG ATATCAGTTTTGATATTCGAGAGTTTTCATAGGTGATCAAATGTATATGG CACAAACTTCAAAACTGACAGAAGCCGGTATTCCTGTCATCACGGAAATC CCGGAGTTGTATGACGGACTGGAATTTCCAGACAATAATTTCAAAATGGG GCGCAAAGCAATTGAACAATATTATAAATTAATCAGGTTTACCAAGTATC GATTTGGATGTTTCAACGGATCTATATATTCAGATTTCATTTTTAGTCGA CACAATTATCAAAAACATTTGGTCAGGAAAAAAAGCATCATGTACACAAA TAAAAAAAAATTATGGCAGTACTGCAGCGAGAGAATGGATTCACCCGTGG CGTGATTCGAGAAGAGTCAAAGTCAACTGTGCAGGAGAAGACACTTCAAG TATTTTAAGTAAAGACCAAACAGATCCAGGATATTTCACATTCATGTCGG ACGTAAGGCCAGCTGCGTGTCAATGGTATGGTTGGGGGAGCGACGACTTT GATTGTACAGAACATGTTGATGGTAGATTTTCCTCACCGTACATTAACTC TGATGACCGGCTCTATGATCGTATTTATAACCGGACGAATGGGGAAACCT ATTCATTTCACGGTGACCATTGGGCATGTTTCGGTCCCAGTAAACCTATC CTAGATCCTGATATCAGTTTTGATATTCGAGAGTTTTCATAGGTGATCAA ATGTATATGGCACAAACTTCAAAACTGACAGAAGCCGGTATTCCTGTCAT CACGGAAATCCCGGAGTTGTATGACGGACTGGAATTTCCAGACAATAATT TCAAAATGGGGCGCAAAGCAATTGAACAATATTATAAATTAATCAGGTTT ACCAAGTATCGATTTGGATGTTTCAACGGATCTATATATTCAGATTTCAT TTTTAGTCGACACAATTATCAAAAACATTTGGTCAGGAAAAAAAGCATCA TGTACACAAATAAAAAAAAATTATGGCAGTACTGCAGCGAGAGAATGGAT TCACCCGTGGCGTGATTCGAGAAGAGTCAAAGTCAACTGTGCAGGAGAAG ACACTTCAAGTATTTTAAGTAAAGACCAAACAGATCCAGGATATTTCACA TTCATGTCGGACGTAAGGCCAGCTGCGTGTCAATGGTATGGTTGGGGGAG CGACGACTTTGATTGTACAGAACATGTTGATGGTAGATTTTCCTCACCGT ACATTAACTCTGATGACCGGCTCTATGATCGTATTTATAACCGGACGAAT GGGGAAACCTATTCATTTCACGGTGACCATTGGGCATGTTTCGGTCCCAG TAAACCTATCCTAGATCCTGATATCAGTTTTGATATTCGAGAGTTTTCAT AGGTGATCAAATGTATATGGCACAAACTTCAAAACTGACAGAAGCCGGTA TTCCTGTCATCACGGAAATCCCGGAGTTGTATGACGGACTGGAATTTCCA GACAATAATTTCAAAATGGGGCGCAAAGCAATTGAACAATATTATAAATT AATCAGGTTTACCAAGTATCGATTTGGATGTTTCAACGGATCTATATATT CAGATTTCATTTTTAGTCGACACAATTATCAAAAACATTTGGTCAGGAAA AAAAGCATCATGTACACAAATAAAAAAAAATTATGGCAGTACTGCAGCGA GAGAATGGATTCACCCGTGGCGTGATTCGAGAAGAGTCAAAGTCAACTGT GCAGGAGAAGACACTTCAAGTATTTTAAGTAAAGACCAAACAGATCCAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00060542-exon-scaffold_344-1575043694:50497..50497 | TCONS_00060542-exon-scaffold_344-1575043694:50497..50497 | Clytia hemisphaerica | exon |
TCONS_00060542-exon-scaffold_344-1575043694:49941..49985 | TCONS_00060542-exon-scaffold_344-1575043694:49941..49985 | Clytia hemisphaerica | exon |
TCONS_00060542-exon-scaffold_344-1575043694:48290..48409 | TCONS_00060542-exon-scaffold_344-1575043694:48290..48409 | Clytia hemisphaerica | exon |
TCONS_00060542-exon-scaffold_344-1575043694:46209..46440 | TCONS_00060542-exon-scaffold_344-1575043694:46209..46440 | Clytia hemisphaerica | exon |
TCONS_00060542-exon-scaffold_344-1575043694:45384..45925 | TCONS_00060542-exon-scaffold_344-1575043694:45384..45925 | Clytia hemisphaerica | exon |
TCONS_00060542-exon-scaffold_344-1510915933:50497..50497 | TCONS_00060542-exon-scaffold_344-1510915933:50497..50497 | Clytia hemisphaerica | exon |
TCONS_00060542-exon-scaffold_344-1510915933:49941..49985 | TCONS_00060542-exon-scaffold_344-1510915933:49941..49985 | Clytia hemisphaerica | exon |
TCONS_00060542-exon-scaffold_344-1510915933:48290..48409 | TCONS_00060542-exon-scaffold_344-1510915933:48290..48409 | Clytia hemisphaerica | exon |
TCONS_00060542-exon-scaffold_344-1510915933:46209..46440 | TCONS_00060542-exon-scaffold_344-1510915933:46209..46440 | Clytia hemisphaerica | exon |
TCONS_00060542-exon-scaffold_344-1510915933:45384..45925 | TCONS_00060542-exon-scaffold_344-1510915933:45384..45925 | Clytia hemisphaerica | exon |
TCONS_00060542-exon-scaffold_344-1491911889:50497..50497 | TCONS_00060542-exon-scaffold_344-1491911889:50497..50497 | Clytia hemisphaerica | exon |
TCONS_00060542-exon-scaffold_344-1491911889:49941..49985 | TCONS_00060542-exon-scaffold_344-1491911889:49941..49985 | Clytia hemisphaerica | exon |
TCONS_00060542-exon-scaffold_344-1491911889:48290..48409 | TCONS_00060542-exon-scaffold_344-1491911889:48290..48409 | Clytia hemisphaerica | exon |
TCONS_00060542-exon-scaffold_344-1491911889:46209..46440 | TCONS_00060542-exon-scaffold_344-1491911889:46209..46440 | Clytia hemisphaerica | exon |
TCONS_00060542-exon-scaffold_344-1491911889:45384..45925 | TCONS_00060542-exon-scaffold_344-1491911889:45384..45925 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_344 | supercontig | scaffold_344:45384..50497 - |
Blast
The following BLAST results are available for this feature:
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