TCONS_00060539 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060539
Unique NameTCONS_00060539
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2448

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060539 ID=TCONS_00060539|Name=TCONS_00060539|organism=Clytia hemisphaerica|type=transcript|length=2448bp
TTATACGAGAAAGAATGAAAACATAAAGCGTgaaaccaaagaaaaaaaac
agttaTAACTAGTTGGCAGatttaaaatgattaaaattaCGAGCTCTTAA
CAGACCACTAAAACCTGCTCCAGAAGAAATAGGGgaataaaaaaaagcaa
cccATGTAACGGTTGGACAATGACAGCTTTGTTTAAAGCGAAAGACGTGT
TAAgcacaaattttcttttttggtcaATGACTCGAATCAAGTCAACCACT
TTCATTTCCAAATAGAAATACTGAGGTTAAATATCAGGttgataattttt
tcttaaagatattttaggaTAAGCACTTCGAAATAAATATACGTGATACA
ATGATCTTTATTTTAGCCTTTTAAGCTGCTTGTGCGCTTGTGTCTTGCAA
AACTTCACGTAGAGTAGATCAGATTTGTTACGTCATTACTAGTAATAGTA
TACTTTTAACATAGCTCAACTTACTTCTGTAATTGCATGGTCCATCCAGT
TTTCTAGCAGGAGGATCTGGCTCCTTTTTTCGTCATACAGTTGGCGAAGT
AGCCAAATAACACCTTTTACAGTCCTTTCATAATTTCATCAAATGAGACA
ATTAGTAATGTTACTGTATACATATCTTGAATAGGCCCCTCTTCTAAGCA
CGCCATCACACTGCAAAAAGTCTTTTATCTCGCCAACAATCACGCCTCAC
GCTTTTTGATTCACGTAATCACGCCATTGCACAAAGCACTAATAGgctct
ttaaaacaaaaaagtgtTTGGGCGATCATTACCAAAGGATACACACGCTG
GAAGATCTTGTGGGAATTAAAATTGACCATTCTAATCAAACATTTCAAAC
GATTTACATATTGAGTCAATCAATCTCTTGGGGCATCAAAGTAATATGGA
TATGATGAAAGTAAAACTATAAATtcgaaatgtttaaaaatgtcattcac
aaatacagACGCAATTGCGGAACAGTGGGACGTGTGGCAATTTCTAACTT
CTTGATCGAATAGTACAGTAAGATCTGTGGTGTGAAATACAAAAAGCAAA
ATCTGTGATCCAAGTTTTTTCTACGATGCATTCAAGGGAGATTATGTTTT
TGTGGTTGTCAATGATTTGTATCTCGTATTTGTCGATGGCCGTTCAAGCT
GAATCAAATACAACCAAAAAGGATTTCTGGATCGAATGTGACACTGAAAA
GATGACGATTTACATTCTGAAAGACGAAATTTCAATCCCTGAAAGTGATA
TTTCCAAATACAATATTTCATGGAATGATCCTACTTGTGGACCAAGTGAA
CAATCCAATGAAACATATTTGGTTTTGGAAGCTGGTTATTCGTCTTGTGG
TACCAAAGCTGTAGTTGAAGGCGATCATGTTATATTCAAGAATAAGGTAT
CCATCAACTTGAACAAAACAAACGGATACCAAAATGATTTATTGGAGAGG
ATCGATACCTTCGCCACATATTCCGTTGAATGCAACGTCCCACAAGGTGT
GAATGTAACACATGAACATGGAGCCAATATCACCAGAGATTCTGATTTGG
TGGAAGGTGTATCAAGTTCGACTGACGAATTCACTGTCTCGATGAATCTC
CATAAATCATCAAACTTCAATGAAAGTCTTGGATATCCCGCAGTTATTGA
TAGATTGGGACGTTTCAATTTGGAACTTGAAATTGACACTGTTGCAAATT
TGTATATCATTCCACGAGATTGTCATGGTACTTCTACTTCTGATCGAGAT
AATGTCATTCGGGAAGCTATTGTCACGGACGGATGTCCAAATGCTGACCA
CGTTTTCAAAAAAGAGTCTACCGCTGACAATGGAAAGAAATTCCGATTTT
CATTGAACGTATTCCGATTCAAAAACTCAAACGGCATGGTCTACATTCAT
TGCTCTGCACATGTCTGTTTGGAAGGAAGTAATACCACAGAATGTCAATT
CGGTTGTGATGTTAATAACAGAAGACGAAGACGTTCAGTGGAGGAGAATG
CTTTGACACTAAATGATGATTTATCCAAAGATTATGACATTCGAACTGGA
TTGATTATTGTAACAGAAAATTCTAAAAGTGACGACGACTCATTCCAACA
AGTCACCCAAGAATCATCCAACAATGCTAAATTCTTTCAAACCACGACCA
ATATCATTCTCATTGCAATCATTTTAGTGATGTTGACTTTTGTATGTTCT
CTCTTGGTTTTTATTGGTTTACGCCGCCGTCGAAGTGGTTCTAAAAGATA
TGGTGTCCCTGGATCTCCTTCGAAGATGGAAATGCATTAAATTGAAGTGA
CAGTATTTTATCATGCCGTTCAATATTTATTAAGTTGCTTCGCTTTGTAT
Tatgttacaaaaatatataaaaatggattttaaaaattgtaaattttttg
taaattcacaaatatgaaaaagattttaaacttcaaattgattatttt
Run BLAST on NCBI

protein sequence of TCONS_00060539-protein

>TCONS_00060539-protein ID=TCONS_00060539-protein|Name=TCONS_00060539-protein|organism=Clytia hemisphaerica|type=polypeptide|length=404bp
MHSREIMFLWLSMICISYLSMAVQAESNTTKKDFWIECDTEKMTIYILKD
EISIPESDISKYNISWNDPTCGPSEQSNETYLVLEAGYSSCGTKAVVEGD
HVIFKNKVSINLNKTNGYQNDLLERIDTFATYSVECNVPQGVNVTHEHGA
NITRDSDLVEGVSSSTDEFTVSMNLHKSSNFNESLGYPAVIDRLGRFNLE
LEIDTVANLYIIPRDCHGTSTSDRDNVIREAIVTDGCPNADHVFKKESTA
DNGKKFRFSLNVFRFKNSNGMVYIHCSAHVCLEGSNTTECQFGCDVNNRR
RRRSVEENALTLNDDLSKDYDIRTGLIIVTENSKSDDDSFQQVTQESSNN
AKFFQTTTNIILIAIILVMLTFVCSLLVFIGLRRRRSGSKRYGVPGSPSK
MEMH
Run BLAST on NCBI

transcript from alignment at scaffold_344:330291..335442+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060539 ID=TCONS_00060539|Name=TCONS_00060539|organism=Clytia hemisphaerica|type=transcript|length=5152bp|location=Sequence derived from alignment at scaffold_344:330291..335442+ (Clytia hemisphaerica)
TTATACGAGAAAGAATGAAAACATAAAGCGTgaaaccaaagaaaaaaaac
agttaTAACTAGTTGGCAGatttaaaatgattaaaattaCGAGCTCTTAA
CAGACCACTAAAACCTGCTCCAGAAGAAATAGGGgaataaaaaaaagcaa
cccATGTAACGGTTGGACAATGACAGCTTTGTTTAAAGCGAAAGACGTGT
TAAgcacaaattttcttttttggtcaATGACTCGAATCAAGTCAACCACT
TTCATTTCCAAATAGAAATACTGAGGTTAAATATCAGGttgataattttt
tcttaaagatattttaggaTAAGCACTTCGAAATAAATATACGTGATACA
ATGATCTTTATTTTAGCCTTTTAAGCTGCTTGTGCGCTTGTGTCTTGCAA
AACTTCACGTAGAGTAGATCAGATTTGTTACGTCATTACTAGTAATAGTA
TACTTTTAACATAGCTCAACTTACTTCTGTAATTGCATGGTCCATCCAGT
TTTCTAGCAGGAGGATCTGGCTCCTTTTTTCGTCATACAGTTGGCGAAGT
AGCCAAATAACACCTTTTACAGTCCTTTCATAATTTCATCAAATGAGACA
ATTAGTAATGTTACTGTATACATATCTTGAATAGGCCCCTCTTCTAAGCA
CGCCATCACACTGCAAAAAGTCTTTTATCTCGCCAACAATCACGCCTCAC
GCTTTTTGATTCACGTAATCACGCCATTGCACAAAGCACTAATAGgctct
ttaaaacaaaaaagtgtTTGGGCGATCATTACCAAAGGATACACACGCTG
GAAGATCTTGTGGGAATTAAAATTGACCATTCTAATCAAACATTTCAAAC
GATTTACATATTGAGTCAATCAATCTCTTGGGGCATCAAAGTAATATGGA
TATGATGAAAGTAAAACTATAAATtcgaaatgtttaaaaatgtcattcac
aaatacagACGCAATTGCGGAACAGTGGGACGTGTGGCAATTTCTAACTT
CTTGATCGAATAGTACAGTAAGATCTGTGGTGTGAAATACAAAAAGCAAA
ATCTGTGATCCAAGTTTTTTCTACGATGCATTCAAGGTGAGTACTGtact
ttgagattttttttatataatttttcataattatcaagaaaatttagaaa
ttgcaATCTAATAGAACACCCTTGTGTcacatgtttaaaaattgcactcc
aataCCATCCCGACTGGATTTTTAACCCTTGAACAATGTAATtcttatcc
ccattgggatttttaTATCCGCTGGGGAACTGAGGAGAAAAGTTTTACCG
GGGAAGgctgtgagacaagggtgtAATAGAAGGTTCTGCAATAGACAAAA
CTTATAAAGCAGCAACAGTTTAATGTTTCATGGCTGATTGGCTGATTGAC
GGAAACCATACCGGAACTCTAGGGAAATTGCAAATCTGGATTGCTGAACT
TATCTTATCACTTAAGGGGTAAGATATTTTGTGCCTGTTTTTTTAGGGAG
ATTATGTTTTTGTGGTTGTCAATGATTTGTATCTCGTATTTGTCGATGGC
CGTTCAAGCTGAATCAAGTAAGAATTTTATTAAATAGTAACAGTTTTTAT
TTTAACGGTAAGATTTaagggaattttttttcttcgaaaattgtTGATAT
TTGTGAAAGGGTAGCCAAGGTTCTAAGCTAATAGTAtgattttgacttta
aaaagatCTGTATAATATTAGCTTAGTTGCAAACAAACTCGGTAAAAACT
TGCACACTTTTCCCAAAGACTTTTCATATTCCCAAGGCAATAAATATCTT
TGGgttatcaaaggcaaaaataataacatctaCATTATTCCCAAGAGCAA
TTAAAAACGAGAAACATTTTCTCTTTGTTTCGAACGCgttatttttatta
aaacaatCAGAAACGACAAATTTTCCTTTTGATTGAGGGAAAAATACTCG
GATGCgacatgaattttgaaattagccgtagatatcgggtctgtttacag
ctcacttcgctaaagccgtaagggccaatctacacggcgcggagcaattc
taaagcaaaaataggatagtcctccaattgctagtgaagatagggctttc
tgttacatgaaaacatgaaaaagaagaaaacagaggcaagttcattttcc
aagaaaacatggttggccatgataatgcatgcaaactctTTTATGggctt
tggtgtaatctttggatgttttaaatagttttagatcttgtaagactact
tttcattaatttctgttttgctgccctgggttggctagtaAACATGGGTT
TCCACTTTCTTTCtgtagggagaccaagctctataattttagaactttgt
atgttgaggtaaattttgttttttctaaaattttgagcttggatatccag
gctatagcGAATGGAGcttaattttaagtttttatagTGGGGTTTTGTTT
CGATGTGTCGTTCAGCTTTCtgaaattataatttttcactATTATAGATA
CAACCAAAAAGGATTTCTGGATCGAATGTGACACTGAAAAGATGACGATT
TACATTCTGAAAGACGAAATTTCAATCCCTGAAAGTGATATTTCCAAATA
CAATATTTCATGGAATGATCCTACTTGTGGACCAAGTGAACAATCCAATG
AAACATATTTGGTTTTGGAAGCTGGTTATTCGTCTTGTGGTACCAAAGCT
GTAGTTGAAGGCGATCATGTTATATTCAAGAATAAGGTAAAGCTTTGATT
TTATTACGTGAGTTCTTTTTTAATCCCACTGGAagaattggtcaaaatat
cgcccccagtggaaaattatactttaatttttgtctccgctgaaaataat
caaataaaccaatcgttatacacccctgtctcgcagtcCCGGTGAAAcct
tcctcagtggggatggttttgaagtacaatttttaaacattgaatatcGA
ATGGGGATAaagtttaaagtcaatttcccaccGAGGATGAAATTTTCGCC
GAACTTTCTAGTGGGGCTCGGATCTCAGCGGGTCCGTGACACAAGGGTGT
CTTTATTGAAGAGAATTTCTCTTCCAGGTATCCATCAACTTGAACAAAAC
AAACGGATACCAAAATGATTTATTGGAGAGGATCGATACCTTCGCCACAT
ATTCCGTTGAATGCAACGTCCCACAAGGTGTGAATGTAACACATGAACAT
GGAGCCAATATCACCAGAGATTCTGATTTGGTGGAAGGTGTATCAAGTGA
GTAAGATTTATGAGGAGATGTcagtaattaaaaaatttttaaagaacaac
TACTTCGCAGCTTGCCACAAATCCTTTTAGAGGagaaatcttataagaac
aggaTCATTTTCCTGAGAACTTGAGACCAAATTGAGATTAGTTCCAGACT
CTACAATCAGAAATAGCCAAAGAATGTTAAAGGCATTTACGCCAGTAAAT
TCATAAACTACAAACGTTTTCGAAATAAAGGTTTTTGTTCTTGAAAGTTA
AGATTGGTCGAATTCTCCATAATTCTGTTTACAGGCTGACGCGACGGGCT
TTGAAATTACCAACATCTATTCATCTTTCTAGGTTCGACTGACGAATTCA
CTGTCTCGATGAATCTCCATAAATCATCAAACTTCAATGAAAGTCTTGGA
TATCCCGCAGTTATTGATAGATTGGGACGTTTCAATTTGGAACTTGAAAT
TGACACTGTTGCAAATTTGTATATCATTCCACGAGATTGTCATGGTACTT
CTACTTCTGATCGAGATAATGTCATTCGGGAAGCTATTGTCACGGACGGg
taattctttttgatttcattttcaagcttTAAATCCTGCTCTATTGAATA
ATGCAGGTTCCATATGATTTGAccatatttaaaatttcatcaaaacttGT
CATTTTTGCCCTATTAATCGATATGTAGTGAAAAATTAGGTAGCGAAATT
TCAGCAAATAGCTAGAATCTTTACCCCGTAAAattaatacaattttttgc
CATTTCTTACATTCTAAACAAATTTAACAATTTCTAACTTTTTAGATGTC
CAAATGCTGACCACGTTTTCAAAAAAGAGTCTACCGCTGACAATGGAAAG
AAATTCCGATTTTCATTGAACGTATTCCGATTCAAAAACTCAAACGGCAT
GGTCTACATTCATTGCTCTGCACATGTCTGTTTGGAAGGAAGTAATACCA
CAGAATGTCAATTCGGTTGTGATGTTAATAACAGAAGACGAAGACGTTCA
GTGGAGGAGAATGCTTTGACACTAAATGATGATTTATCCAAAGATTATGA
CATTCGAACTGGATTGATTATTGTAACAGAAAATTCTAAAAGTGAGTTGA
AATTTATTATTCTTGACaagaaaatactaaaatacAGTAACTCTATCAAA
AATGTAACTCATCGACAGTTCATCCGAGGAATTCATAGTCCCTCTCTTAT
ggcacccctgtgtcacagactcgccaggaccccagccccacagagaaatt
tggcagaaatttcATCCCCTTTGGAAAAATACCCTTTGATTTCATCGCCA
CTTGAAATTGAATGTTAAAAATTtccactccaaaaccatccatCCCTGCc
ggattttttttaactttggaacaaTCAAATTGctattcccattgggattt
caaaaataagttttatCCCCACTTaggaaaagttccaccgggactCTAAA
TCGAGCAGAGAGAGTCGTGCGGACGTTTTCCTTTTTGTACTGCACAGGGA
GCTTATAATCATCCAATCTTCAATATTCCTAGGTGACGACGACTCATTCC
AACAAGTCACCCAAGAATCATCCAACAATGCTAAATTCTTTCAAACCACG
ACCAATATCATTCTCATTGCAATCATTTTAGTGATGTTGACTTTTGTATG
TTCTCTCTTGGTTTTTATTGGTTTACGCCGCCGTCGAAGTGGTTCTAAAA
GATATGGTGTCCCTGGATCTCCTTCGAAGATGGAAATGCATTAAATTGAA
GTGACAGTATTTTATCATGCCGTTCAATATTTATTAAGTTGCTTCGCTTT
GTATTatgttacaaaaatatataaaaatggattttaaaaattgtaaattt
tttgtaaattcacaaatatgaaaaagattttaaacttcaaattgattatt
tt

Coding sequence (CDS) from alignment at scaffold_344:330291..335442+

>TCONS_00060539 ID=TCONS_00060539|Name=TCONS_00060539|organism=Clytia hemisphaerica|type=CDS|length=8505bp|location=Sequence derived from alignment at scaffold_344:330291..335442+ (Clytia hemisphaerica)
ATGCATTCAAGGGAGATTATGTTTTTGTGGTTGTCAATGATTTGTATCTC
GTATTTGTCGATGGCCGTTCAAGCTGAATCAAATACAACCAAAAAGGATT
TCTGGATCGAATGTGACACTGAAAAGATGACGATTTACATTCTGAAAGAC
GAAATTTCAATCCCTGAAAGTGATATTTCCAAATACAATATTTCATGGAA
TGATCCTACTTGTGGACCAAGTGAACAATCCAATGAAACATATTTGGTTT
TGGAAGCTGGTTATTCGTCTTGTGGTACCAAAGCTGTAGTTGAAGGCGAT
CATGTTATATTCAAGAATAAGGTATCCATCAACTTGAACAAAACAAACGG
ATACCAAAATGATTTATTGGAGAGGATCGATACCTTCGCCACATATTCCG
TTGAATGCAACGTCCCACAAGGTGTGAATGTAACACATGAACATGGAGCC
AATATCACCAGAGATTCTGATTTGGTGGAAGGTGTATCAAGTTCGACTGA
CGAATTCACTGTCTCGATGAATCTCCATAAATCATCAAACTTCAATGAAA
GTCTTGGATATCCCGCAGTTATTGATAGATTGGGACGTTTCAATTTGGAA
CTTGAAATTGACACTGTTGCAAATTTGTATATCATTCCACGAGATTGTCA
TGGTACTTCTACTTCTGATCGAGATAATGTCATTCGGGAAGCTATTGTCA
CGGACGGATGTCCAAATGCTGACCACGTTTTCAAAAAAGAGTCTACCGCT
GACAATGGAAAGAAATTCCGATTTTCATTGAACGTATTCCGATTCAAAAA
CTCAAACGGCATGGTCTACATTCATTGCTCTGCACATGTCTGTTTGGAAG
GAAGTAATACCACAGAATGTCAATTCGGTTGTGATGTTAATAACAGAAGA
CGAAGACGTTCAGTGGAGGAGAATGCTTTGACACTAAATGATGATTTATC
CAAAGATTATGACATTCGAACTGGATTGATTATTGTAACAGAAAATTCTA
AAAGTGACGACGACTCATTCCAACAAGTCACCCAAGAATCATCCAACAAT
GCTAAATTCTTTCAAACCACGACCAATATCATTCTCATTGCAATCATTTT
AGTGATGTTGACTTTTGTATGTTCTCTCTTGGTTTTTATTGGTTTACGCC
GCCGTCGAAGTGGTTCTAAAAGATATGGTGTCCCTGGATCTCCTTCGAAG
ATGGAAATGCATTAAATGCATTCAAGGGAGATTATGTTTTTGTGGTTGTC
AATGATTTGTATCTCGTATTTGTCGATGGCCGTTCAAGCTGAATCAAATA
CAACCAAAAAGGATTTCTGGATCGAATGTGACACTGAAAAGATGACGATT
TACATTCTGAAAGACGAAATTTCAATCCCTGAAAGTGATATTTCCAAATA
CAATATTTCATGGAATGATCCTACTTGTGGACCAAGTGAACAATCCAATG
AAACATATTTGGTTTTGGAAGCTGGTTATTCGTCTTGTGGTACCAAAGCT
GTAGTTGAAGGCGATCATGTTATATTCAAGAATAAGGTATCCATCAACTT
GAACAAAACAAACGGATACCAAAATGATTTATTGGAGAGGATCGATACCT
TCGCCACATATTCCGTTGAATGCAACGTCCCACAAGGTGTGAATGTAACA
CATGAACATGGAGCCAATATCACCAGAGATTCTGATTTGGTGGAAGGTGT
ATCAAGTTCGACTGACGAATTCACTGTCTCGATGAATCTCCATAAATCAT
CAAACTTCAATGAAAGTCTTGGATATCCCGCAGTTATTGATAGATTGGGA
CGTTTCAATTTGGAACTTGAAATTGACACTGTTGCAAATTTGTATATCAT
TCCACGAGATTGTCATGGTACTTCTACTTCTGATCGAGATAATGTCATTC
GGGAAGCTATTGTCACGGACGGATGTCCAAATGCTGACCACGTTTTCAAA
AAAGAGTCTACCGCTGACAATGGAAAGAAATTCCGATTTTCATTGAACGT
ATTCCGATTCAAAAACTCAAACGGCATGGTCTACATTCATTGCTCTGCAC
ATGTCTGTTTGGAAGGAAGTAATACCACAGAATGTCAATTCGGTTGTGAT
GTTAATAACAGAAGACGAAGACGTTCAGTGGAGGAGAATGCTTTGACACT
AAATGATGATTTATCCAAAGATTATGACATTCGAACTGGATTGATTATTG
TAACAGAAAATTCTAAAAGTGACGACGACTCATTCCAACAAGTCACCCAA
GAATCATCCAACAATGCTAAATTCTTTCAAACCACGACCAATATCATTCT
CATTGCAATCATTTTAGTGATGTTGACTTTTGTATGTTCTCTCTTGGTTT
TTATTGGTTTACGCCGCCGTCGAAGTGGTTCTAAAAGATATGGTGTCCCT
GGATCTCCTTCGAAGATGGAAATGCATTAAATGCATTCAAGGGAGATTAT
GTTTTTGTGGTTGTCAATGATTTGTATCTCGTATTTGTCGATGGCCGTTC
AAGCTGAATCAAATACAACCAAAAAGGATTTCTGGATCGAATGTGACACT
GAAAAGATGACGATTTACATTCTGAAAGACGAAATTTCAATCCCTGAAAG
TGATATTTCCAAATACAATATTTCATGGAATGATCCTACTTGTGGACCAA
GTGAACAATCCAATGAAACATATTTGGTTTTGGAAGCTGGTTATTCGTCT
TGTGGTACCAAAGCTGTAGTTGAAGGCGATCATGTTATATTCAAGAATAA
GGTATCCATCAACTTGAACAAAACAAACGGATACCAAAATGATTTATTGG
AGAGGATCGATACCTTCGCCACATATTCCGTTGAATGCAACGTCCCACAA
GGTGTGAATGTAACACATGAACATGGAGCCAATATCACCAGAGATTCTGA
TTTGGTGGAAGGTGTATCAAGTTCGACTGACGAATTCACTGTCTCGATGA
ATCTCCATAAATCATCAAACTTCAATGAAAGTCTTGGATATCCCGCAGTT
ATTGATAGATTGGGACGTTTCAATTTGGAACTTGAAATTGACACTGTTGC
AAATTTGTATATCATTCCACGAGATTGTCATGGTACTTCTACTTCTGATC
GAGATAATGTCATTCGGGAAGCTATTGTCACGGACGGATGTCCAAATGCT
GACCACGTTTTCAAAAAAGAGTCTACCGCTGACAATGGAAAGAAATTCCG
ATTTTCATTGAACGTATTCCGATTCAAAAACTCAAACGGCATGGTCTACA
TTCATTGCTCTGCACATGTCTGTTTGGAAGGAAGTAATACCACAGAATGT
CAATTCGGTTGTGATGTTAATAACAGAAGACGAAGACGTTCAGTGGAGGA
GAATGCTTTGACACTAAATGATGATTTATCCAAAGATTATGACATTCGAA
CTGGATTGATTATTGTAACAGAAAATTCTAAAAGTGACGACGACTCATTC
CAACAAGTCACCCAAGAATCATCCAACAATGCTAAATTCTTTCAAACCAC
GACCAATATCATTCTCATTGCAATCATTTTAGTGATGTTGACTTTTGTAT
GTTCTCTCTTGGTTTTTATTGGTTTACGCCGCCGTCGAAGTGGTTCTAAA
AGATATGGTGTCCCTGGATCTCCTTCGAAGATGGAAATGCATTAAATGCA
TTCAAGGGAGATTATGTTTTTGTGGTTGTCAATGATTTGTATCTCGTATT
TGTCGATGGCCGTTCAAGCTGAATCAAATACAACCAAAAAGGATTTCTGG
ATCGAATGTGACACTGAAAAGATGACGATTTACATTCTGAAAGACGAAAT
TTCAATCCCTGAAAGTGATATTTCCAAATACAATATTTCATGGAATGATC
CTACTTGTGGACCAAGTGAACAATCCAATGAAACATATTTGGTTTTGGAA
GCTGGTTATTCGTCTTGTGGTACCAAAGCTGTAGTTGAAGGCGATCATGT
TATATTCAAGAATAAGGTATCCATCAACTTGAACAAAACAAACGGATACC
AAAATGATTTATTGGAGAGGATCGATACCTTCGCCACATATTCCGTTGAA
TGCAACGTCCCACAAGGTGTGAATGTAACACATGAACATGGAGCCAATAT
CACCAGAGATTCTGATTTGGTGGAAGGTGTATCAAGTTCGACTGACGAAT
TCACTGTCTCGATGAATCTCCATAAATCATCAAACTTCAATGAAAGTCTT
GGATATCCCGCAGTTATTGATAGATTGGGACGTTTCAATTTGGAACTTGA
AATTGACACTGTTGCAAATTTGTATATCATTCCACGAGATTGTCATGGTA
CTTCTACTTCTGATCGAGATAATGTCATTCGGGAAGCTATTGTCACGGAC
GGATGTCCAAATGCTGACCACGTTTTCAAAAAAGAGTCTACCGCTGACAA
TGGAAAGAAATTCCGATTTTCATTGAACGTATTCCGATTCAAAAACTCAA
ACGGCATGGTCTACATTCATTGCTCTGCACATGTCTGTTTGGAAGGAAGT
AATACCACAGAATGTCAATTCGGTTGTGATGTTAATAACAGAAGACGAAG
ACGTTCAGTGGAGGAGAATGCTTTGACACTAAATGATGATTTATCCAAAG
ATTATGACATTCGAACTGGATTGATTATTGTAACAGAAAATTCTAAAAGT
GACGACGACTCATTCCAACAAGTCACCCAAGAATCATCCAACAATGCTAA
ATTCTTTCAAACCACGACCAATATCATTCTCATTGCAATCATTTTAGTGA
TGTTGACTTTTGTATGTTCTCTCTTGGTTTTTATTGGTTTACGCCGCCGT
CGAAGTGGTTCTAAAAGATATGGTGTCCCTGGATCTCCTTCGAAGATGGA
AATGCATTAAATGCATTCAAGGGAGATTATGTTTTTGTGGTTGTCAATGA
TTTGTATCTCGTATTTGTCGATGGCCGTTCAAGCTGAATCAAATACAACC
AAAAAGGATTTCTGGATCGAATGTGACACTGAAAAGATGACGATTTACAT
TCTGAAAGACGAAATTTCAATCCCTGAAAGTGATATTTCCAAATACAATA
TTTCATGGAATGATCCTACTTGTGGACCAAGTGAACAATCCAATGAAACA
TATTTGGTTTTGGAAGCTGGTTATTCGTCTTGTGGTACCAAAGCTGTAGT
TGAAGGCGATCATGTTATATTCAAGAATAAGGTATCCATCAACTTGAACA
AAACAAACGGATACCAAAATGATTTATTGGAGAGGATCGATACCTTCGCC
ACATATTCCGTTGAATGCAACGTCCCACAAGGTGTGAATGTAACACATGA
ACATGGAGCCAATATCACCAGAGATTCTGATTTGGTGGAAGGTGTATCAA
GTTCGACTGACGAATTCACTGTCTCGATGAATCTCCATAAATCATCAAAC
TTCAATGAAAGTCTTGGATATCCCGCAGTTATTGATAGATTGGGACGTTT
CAATTTGGAACTTGAAATTGACACTGTTGCAAATTTGTATATCATTCCAC
GAGATTGTCATGGTACTTCTACTTCTGATCGAGATAATGTCATTCGGGAA
GCTATTGTCACGGACGGATGTCCAAATGCTGACCACGTTTTCAAAAAAGA
GTCTACCGCTGACAATGGAAAGAAATTCCGATTTTCATTGAACGTATTCC
GATTCAAAAACTCAAACGGCATGGTCTACATTCATTGCTCTGCACATGTC
TGTTTGGAAGGAAGTAATACCACAGAATGTCAATTCGGTTGTGATGTTAA
TAACAGAAGACGAAGACGTTCAGTGGAGGAGAATGCTTTGACACTAAATG
ATGATTTATCCAAAGATTATGACATTCGAACTGGATTGATTATTGTAACA
GAAAATTCTAAAAGTGACGACGACTCATTCCAACAAGTCACCCAAGAATC
ATCCAACAATGCTAAATTCTTTCAAACCACGACCAATATCATTCTCATTG
CAATCATTTTAGTGATGTTGACTTTTGTATGTTCTCTCTTGGTTTTTATT
GGTTTACGCCGCCGTCGAAGTGGTTCTAAAAGATATGGTGTCCCTGGATC
TCCTTCGAAGATGGAAATGCATTAAATGCATTCAAGGGAGATTATGTTTT
TGTGGTTGTCAATGATTTGTATCTCGTATTTGTCGATGGCCGTTCAAGCT
GAATCAAATACAACCAAAAAGGATTTCTGGATCGAATGTGACACTGAAAA
GATGACGATTTACATTCTGAAAGACGAAATTTCAATCCCTGAAAGTGATA
TTTCCAAATACAATATTTCATGGAATGATCCTACTTGTGGACCAAGTGAA
CAATCCAATGAAACATATTTGGTTTTGGAAGCTGGTTATTCGTCTTGTGG
TACCAAAGCTGTAGTTGAAGGCGATCATGTTATATTCAAGAATAAGGTAT
CCATCAACTTGAACAAAACAAACGGATACCAAAATGATTTATTGGAGAGG
ATCGATACCTTCGCCACATATTCCGTTGAATGCAACGTCCCACAAGGTGT
GAATGTAACACATGAACATGGAGCCAATATCACCAGAGATTCTGATTTGG
TGGAAGGTGTATCAAGTTCGACTGACGAATTCACTGTCTCGATGAATCTC
CATAAATCATCAAACTTCAATGAAAGTCTTGGATATCCCGCAGTTATTGA
TAGATTGGGACGTTTCAATTTGGAACTTGAAATTGACACTGTTGCAAATT
TGTATATCATTCCACGAGATTGTCATGGTACTTCTACTTCTGATCGAGAT
AATGTCATTCGGGAAGCTATTGTCACGGACGGATGTCCAAATGCTGACCA
CGTTTTCAAAAAAGAGTCTACCGCTGACAATGGAAAGAAATTCCGATTTT
CATTGAACGTATTCCGATTCAAAAACTCAAACGGCATGGTCTACATTCAT
TGCTCTGCACATGTCTGTTTGGAAGGAAGTAATACCACAGAATGTCAATT
CGGTTGTGATGTTAATAACAGAAGACGAAGACGTTCAGTGGAGGAGAATG
CTTTGACACTAAATGATGATTTATCCAAAGATTATGACATTCGAACTGGA
TTGATTATTGTAACAGAAAATTCTAAAAGTGACGACGACTCATTCCAACA
AGTCACCCAAGAATCATCCAACAATGCTAAATTCTTTCAAACCACGACCA
ATATCATTCTCATTGCAATCATTTTAGTGATGTTGACTTTTGTATGTTCT
CTCTTGGTTTTTATTGGTTTACGCCGCCGTCGAAGTGGTTCTAAAAGATA
TGGTGTCCCTGGATCTCCTTCGAAGATGGAAATGCATTAAATGCATTCAA
GGGAGATTATGTTTTTGTGGTTGTCAATGATTTGTATCTCGTATTTGTCG
ATGGCCGTTCAAGCTGAATCAAATACAACCAAAAAGGATTTCTGGATCGA
ATGTGACACTGAAAAGATGACGATTTACATTCTGAAAGACGAAATTTCAA
TCCCTGAAAGTGATATTTCCAAATACAATATTTCATGGAATGATCCTACT
TGTGGACCAAGTGAACAATCCAATGAAACATATTTGGTTTTGGAAGCTGG
TTATTCGTCTTGTGGTACCAAAGCTGTAGTTGAAGGCGATCATGTTATAT
TCAAGAATAAGGTATCCATCAACTTGAACAAAACAAACGGATACCAAAAT
GATTTATTGGAGAGGATCGATACCTTCGCCACATATTCCGTTGAATGCAA
CGTCCCACAAGGTGTGAATGTAACACATGAACATGGAGCCAATATCACCA
GAGATTCTGATTTGGTGGAAGGTGTATCAAGTTCGACTGACGAATTCACT
GTCTCGATGAATCTCCATAAATCATCAAACTTCAATGAAAGTCTTGGATA
TCCCGCAGTTATTGATAGATTGGGACGTTTCAATTTGGAACTTGAAATTG
ACACTGTTGCAAATTTGTATATCATTCCACGAGATTGTCATGGTACTTCT
ACTTCTGATCGAGATAATGTCATTCGGGAAGCTATTGTCACGGACGGATG
TCCAAATGCTGACCACGTTTTCAAAAAAGAGTCTACCGCTGACAATGGAA
AGAAATTCCGATTTTCATTGAACGTATTCCGATTCAAAAACTCAAACGGC
ATGGTCTACATTCATTGCTCTGCACATGTCTGTTTGGAAGGAAGTAATAC
CACAGAATGTCAATTCGGTTGTGATGTTAATAACAGAAGACGAAGACGTT
CAGTGGAGGAGAATGCTTTGACACTAAATGATGATTTATCCAAAGATTAT
GACATTCGAACTGGATTGATTATTGTAACAGAAAATTCTAAAAGTGACGA
CGACTCATTCCAACAAGTCACCCAAGAATCATCCAACAATGCTAAATTCT
TTCAAACCACGACCAATATCATTCTCATTGCAATCATTTTAGTGATGTTG
ACTTTTGTATGTTCTCTCTTGGTTTTTATTGGTTTACGCCGCCGTCGAAG
TGGTTCTAAAAGATATGGTGTCCCTGGATCTCCTTCGAAGATGGAAATGC
ATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038080XLOC_038080Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060539-proteinTCONS_00060539-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060539-exon-scaffold_344-1491911889:330291..331376TCONS_00060539-exon-scaffold_344-1491911889:330291..331376Clytia hemisphaericaexon
TCONS_00060539-exon-scaffold_344-1510915933:330291..331376TCONS_00060539-exon-scaffold_344-1510915933:330291..331376Clytia hemisphaericaexon
TCONS_00060539-exon-scaffold_344-1575043694:330291..331376TCONS_00060539-exon-scaffold_344-1575043694:330291..331376Clytia hemisphaericaexon
TCONS_00060539-exon-scaffold_344-1491911889:331787..331857TCONS_00060539-exon-scaffold_344-1491911889:331787..331857Clytia hemisphaericaexon
TCONS_00060539-exon-scaffold_344-1510915933:331787..331857TCONS_00060539-exon-scaffold_344-1510915933:331787..331857Clytia hemisphaericaexon
TCONS_00060539-exon-scaffold_344-1575043694:331787..331857TCONS_00060539-exon-scaffold_344-1575043694:331787..331857Clytia hemisphaericaexon
TCONS_00060539-exon-scaffold_344-1491911889:332788..333026TCONS_00060539-exon-scaffold_344-1491911889:332788..333026Clytia hemisphaericaexon
TCONS_00060539-exon-scaffold_344-1510915933:332788..333026TCONS_00060539-exon-scaffold_344-1510915933:332788..333026Clytia hemisphaericaexon
TCONS_00060539-exon-scaffold_344-1575043694:332788..333026TCONS_00060539-exon-scaffold_344-1575043694:332788..333026Clytia hemisphaericaexon
TCONS_00060539-exon-scaffold_344-1491911889:333368..333536TCONS_00060539-exon-scaffold_344-1491911889:333368..333536Clytia hemisphaericaexon
TCONS_00060539-exon-scaffold_344-1510915933:333368..333536TCONS_00060539-exon-scaffold_344-1510915933:333368..333536Clytia hemisphaericaexon
TCONS_00060539-exon-scaffold_344-1575043694:333368..333536TCONS_00060539-exon-scaffold_344-1575043694:333368..333536Clytia hemisphaericaexon
TCONS_00060539-exon-scaffold_344-1491911889:333873..334089TCONS_00060539-exon-scaffold_344-1491911889:333873..334089Clytia hemisphaericaexon
TCONS_00060539-exon-scaffold_344-1510915933:333873..334089TCONS_00060539-exon-scaffold_344-1510915933:333873..334089Clytia hemisphaericaexon
TCONS_00060539-exon-scaffold_344-1575043694:333873..334089TCONS_00060539-exon-scaffold_344-1575043694:333873..334089Clytia hemisphaericaexon
TCONS_00060539-exon-scaffold_344-1491911889:334336..334631TCONS_00060539-exon-scaffold_344-1491911889:334336..334631Clytia hemisphaericaexon
TCONS_00060539-exon-scaffold_344-1510915933:334336..334631TCONS_00060539-exon-scaffold_344-1510915933:334336..334631Clytia hemisphaericaexon
TCONS_00060539-exon-scaffold_344-1575043694:334336..334631TCONS_00060539-exon-scaffold_344-1575043694:334336..334631Clytia hemisphaericaexon
TCONS_00060539-exon-scaffold_344-1491911889:335073..335442TCONS_00060539-exon-scaffold_344-1491911889:335073..335442Clytia hemisphaericaexon
TCONS_00060539-exon-scaffold_344-1510915933:335073..335442TCONS_00060539-exon-scaffold_344-1510915933:335073..335442Clytia hemisphaericaexon
TCONS_00060539-exon-scaffold_344-1575043694:335073..335442TCONS_00060539-exon-scaffold_344-1575043694:335073..335442Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_344supercontigscaffold_344:330291..335442 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
876.246	895.441	834.513	782.81	2.82115	2.33508	0.580197	0.874082	0.468923	2.2108	0.370996	0.390182	0.011839	0.0245898	0.0359901	0.125933	0.0450662	0.0622126	0.0571675	0.0363489	1.13697	0.738023	271.043	217.464	0.0191431	0.133266	9.79845	12.9465	131.675	159.719
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001507ZP_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060539 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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