TCONS_00060538 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060538
Unique NameTCONS_00060538
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length767

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060538 ID=TCONS_00060538|Name=TCONS_00060538|organism=Clytia hemisphaerica|type=transcript|length=767bp
GACAAAAGGCAATTAGTGTCAAATTCGTATAAATAGGGctgatttttgaa
gaatttccATACGATCAATTTTGAAAACCTTTCTCAGAAGTTACTACAGC
TACAGATCGACGATTAAACCGAAGATGCATTTGAAACTTATTGTTCTCAC
AGTGTTCTTGGTGGTGATTGCATCCGCAATGTCAATGCCAGCCAACGAAA
GAAGAGCTATAAGACGAGCATGTAGACGAGTCAGAGCACGAAACAACCGA
ATCTTAAGCAACCCTAACCTAACACATGCTCAGAAACAAGAAAGAATTGC
CTATGTTAGACAATGGAGATTTGACTGCACAAAATTTGTCCTGTGTGGAG
CTCATCCTGGACAAGACTTTTTGATGTCATGTCCAGCAGGTCTTGGATGG
AACAGATCATTCAACACTTGCGATTTTCCTAGCAATTTACCGGAATGTCC
TGGACATTAAATTTTACACCATCATACAGTtaattatttatttcttttgt
aagaaAACTGAAactaatgtttttaattttcggATAAATTAGGAGAATTG
ACTGTACACTTCTTgcacaattttatttttttacatttttcataattttt
gtgttatttttttaCCTAGTAAACTTTGTATTCTAAAATTTGGtgcattt
tttatgtattttttaacgtttttaaccACGCTTGTTAATATACAAtacgt
tttttaataaaaagaaaaaacaatgaacCCACAATGCATCAATGTGCAAA
TTGAGCAAAACTAATTA
Run BLAST on NCBI

protein sequence of Carbohydrate binding domain containing secreted protein

>TCONS_00060538-protein ID=TCONS_00060538-protein|Name=Carbohydrate binding domain containing secreted protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
MHLKLIVLTVFLVVIASAMSMPANERRAIRRACRRVRARNNRILSNPNLT
HAQKQERIAYVRQWRFDCTKFVLCGAHPGQDFLMSCPAGLGWNRSFNTCD
FPSNLPECPGH
Run BLAST on NCBI

transcript from alignment at scaffold_344:280482..282973+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060538 ID=TCONS_00060538|Name=TCONS_00060538|organism=Clytia hemisphaerica|type=transcript|length=2492bp|location=Sequence derived from alignment at scaffold_344:280482..282973+ (Clytia hemisphaerica)
GACAAAAGGCAATTAGTGTCAAATTCGTATAAATAGGGctgatttttgaa
gaatttccATACGATCAATTTTGAAAACCTTTCTCAGAAGTTACTACAGC
TACAGGTAAGAATGACTTAACAACTTCAGTGACCTTGATTTTGGTCCAAT
AGCAAATGgatactaaaattatttttagcagGGCTTTTGGTATTTTTCTG
ATAAAGAATGGTTGTAGAATCTCCAGCCTGGGAAGTGAATCTTTTActcg
aaacaatactgtagaATATGAACAGATATTTAGAATAGCGATTATCATAC
AGCGATTAACTCAAAGGGGGCGTTTATGAaatatgagtactaaaagggtt
TTCGAGAATTTTTGTATACCACCACCCCATTTTAgagaagtggtatttta
gtacccatGTAATAAAGTTTTAGGGTTATTTTGACACAGATACCACCCAA
TTTTGCTCTTCTCAGGATAAATTCTGTCTTCTCGGGACCATTTTTCTCAA
GAGTGCTGATTTCTGCATATACCaacataattttcatttttgcaaaaacT
GATACTTCATAACAAAAAATCTTGACAGCCAAGGGAGAAATTTGATTGCG
TTAGTCACTCAATACACTCTGTACTCGGATGATTCTACCTATTTGTGGTT
TTGGATGTCTTGATAATGAACAATTATaagataaatttgatttttcatat
ttcacaTTTCAGATCGACGATTAAACCGAAGATGCATTTGAAACTTATTG
TTCTCACAGGTAAGCTAGTATATATTTGCAGGTGGTGTTCGATGACAAAT
AAGAGCCTTGTAAATAATGttcattacaaaaaaatatatgttaaaagttt
ttctgtGAGTTGTCATAATGATAATTTTTGTtgtgaatttatttttgttg
aaaaagaatggaccaatttgtctttttttgtgAGTACGATTGCAAACTTC
TTGACCTTAGCAAATTTGACAATTGTTTATTGAAAGGTGAAGAGGCTTTA
ATGTTGTATTGATTCTTCTTCACTTTAGTGTTCTTGGTGGTGATTGCATC
CGCAATGTCAATGCCAGCCAACGAAAGAAGAGCTATAAGTAtgtttcatt
ttcaactttcaattttACTTTCTCAATTACAGTGATTATGTTTGCGTccg
tagcgtagacaggaggggagcaaaatttgtgtaggagagcagatttttat
gacactctaattatctttttacattACGAATATATAATAGCACAccgtta
tgcaaacgtcataattattacttttaacacttgaccgaaaatcaatccca
caatccttttcgtcttaattaaAAAGTCGTGAAANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTG
CATGCAGGCGTAGTTAACGcgaagggtgatgggattgaatttcggtcaaa
cagaaaaatcaatgtctatttttagattcactgcggtatgctattacagt
gtcataaaaatctgctctccaacacaaattttgcacccctCCTACTGTGC
GTTTTTACATAAATGCATTTATTAACACTCATACCCtgataaaaagtaaa
gaaacTGAGTAGATTTTGCAGCCTaaagatattcttaaatttatgGGTTT
TTATCTAGTATGtttttaaagtgttcttatatATTAGAGTGTTATGGTCT
TATATCCTAAGAAATTACATATCATTAAAATATCCTTACAATATCTTAAA
AGTTTTTCGTCTAGAAGCCTTATGATGACGTTATGTTGTTTTTATCGctt
ttgtttataaatttttGTTATCGTTTTCATGTTTCAGGACGAGCATGTAG
ACGAGTCAGAGCACGAAACAACCGAATCTTAAGCAACCCTAACCTAACAC
ATGCTCAGAAACAAGAAAGAATTGCCTATGTTAGACAATGGAGATTTGAC
TGCACAAAATTTGTCCTGTGTGGAGCTCATCCTGGACAAGACTTTTTGAT
GTCATGTCCAGCAGGTCTTGGATGGAACAGATCATTCAACACTTGCGATT
TTCCTAGCAATTTACCGGAATGTCCTGGACATTAAATTTTACACCATCAT
ACAGTtaattatttatttcttttgtaagaaAACTGAAactaatgttttta
attttcggATAAATTAGGAGAATTGACTGTACACTTCTTgcacaatttta
tttttttacatttttcataatttttgtgttatttttttaCCTAGTAAACT
TTGTATTCTAAAATTTGGtgcattttttatgtattttttaacgtttttaa
ccACGCTTGTTAATATACAAtacgttttttaataaaaagaaaaaacaatg
aacCCACAATGCATCAATGTGCAAATTGAGCAAAACTAATTA

Coding sequence (CDS) from alignment at scaffold_344:280482..282973+

>TCONS_00060538 ID=TCONS_00060538|Name=TCONS_00060538|organism=Clytia hemisphaerica|type=CDS|length=1008bp|location=Sequence derived from alignment at scaffold_344:280482..282973+ (Clytia hemisphaerica)
ATGCATTTGAAACTTATTGTTCTCACAGTGTTCTTGGTGGTGATTGCATC
CGCAATGTCAATGCCAGCCAACGAAAGAAGAGCTATAAGACGAGCATGTA
GACGAGTCAGAGCACGAAACAACCGAATCTTAAGCAACCCTAACCTAACA
CATGCTCAGAAACAAGAAAGAATTGCCTATGTTAGACAATGGAGATTTGA
CTGCACAAAATTTGTCCTGTGTGGAGCTCATCCTGGACAAGACTTTTTGA
TGTCATGTCCAGCAGGTCTTGGATGGAACAGATCATTCAACACTTGCGAT
TTTCCTAGCAATTTACCGGAATGTCCTGGACATTAAATGCATTTGAAACT
TATTGTTCTCACAGTGTTCTTGGTGGTGATTGCATCCGCAATGTCAATGC
CAGCCAACGAAAGAAGAGCTATAAGACGAGCATGTAGACGAGTCAGAGCA
CGAAACAACCGAATCTTAAGCAACCCTAACCTAACACATGCTCAGAAACA
AGAAAGAATTGCCTATGTTAGACAATGGAGATTTGACTGCACAAAATTTG
TCCTGTGTGGAGCTCATCCTGGACAAGACTTTTTGATGTCATGTCCAGCA
GGTCTTGGATGGAACAGATCATTCAACACTTGCGATTTTCCTAGCAATTT
ACCGGAATGTCCTGGACATTAAATGCATTTGAAACTTATTGTTCTCACAG
TGTTCTTGGTGGTGATTGCATCCGCAATGTCAATGCCAGCCAACGAAAGA
AGAGCTATAAGACGAGCATGTAGACGAGTCAGAGCACGAAACAACCGAAT
CTTAAGCAACCCTAACCTAACACATGCTCAGAAACAAGAAAGAATTGCCT
ATGTTAGACAATGGAGATTTGACTGCACAAAATTTGTCCTGTGTGGAGCT
CATCCTGGACAAGACTTTTTGATGTCATGTCCAGCAGGTCTTGGATGGAA
CAGATCATTCAACACTTGCGATTTTCCTAGCAATTTACCGGAATGTCCTG
GACATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038079XLOC_038079Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
Carbohydrate binding domain containing secreted proteinTCONS_00060538-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060538-exon-scaffold_344-1491911889:280482..280586TCONS_00060538-exon-scaffold_344-1491911889:280482..280586Clytia hemisphaericaexon
TCONS_00060538-exon-scaffold_344-1510915933:280482..280586TCONS_00060538-exon-scaffold_344-1510915933:280482..280586Clytia hemisphaericaexon
TCONS_00060538-exon-scaffold_344-1575043694:280482..280586TCONS_00060538-exon-scaffold_344-1575043694:280482..280586Clytia hemisphaericaexon
TCONS_00060538-exon-scaffold_344-1491911889:281194..281240TCONS_00060538-exon-scaffold_344-1491911889:281194..281240Clytia hemisphaericaexon
TCONS_00060538-exon-scaffold_344-1510915933:281194..281240TCONS_00060538-exon-scaffold_344-1510915933:281194..281240Clytia hemisphaericaexon
TCONS_00060538-exon-scaffold_344-1575043694:281194..281240TCONS_00060538-exon-scaffold_344-1575043694:281194..281240Clytia hemisphaericaexon
TCONS_00060538-exon-scaffold_344-1491911889:281510..281569TCONS_00060538-exon-scaffold_344-1491911889:281510..281569Clytia hemisphaericaexon
TCONS_00060538-exon-scaffold_344-1510915933:281510..281569TCONS_00060538-exon-scaffold_344-1510915933:281510..281569Clytia hemisphaericaexon
TCONS_00060538-exon-scaffold_344-1575043694:281510..281569TCONS_00060538-exon-scaffold_344-1575043694:281510..281569Clytia hemisphaericaexon
TCONS_00060538-exon-scaffold_344-1491911889:282419..282973TCONS_00060538-exon-scaffold_344-1491911889:282419..282973Clytia hemisphaericaexon
TCONS_00060538-exon-scaffold_344-1510915933:282419..282973TCONS_00060538-exon-scaffold_344-1510915933:282419..282973Clytia hemisphaericaexon
TCONS_00060538-exon-scaffold_344-1575043694:282419..282973TCONS_00060538-exon-scaffold_344-1575043694:282419..282973Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_344supercontigscaffold_344:280482..282973 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	4.28707	2.16813	1.63485	1.60705	0.910823	1.39366	0	0.21172	582.648	541.63	280.52	90.4284	6.87303	3.17987	0	0.707251	0.799148	1.25934	0.291599	0.331382	2.66227	4.08186	0.348724	0.372168	2.46992	2.30076
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002557Chitin-bd_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: Biological Process
TermDefinition
GO:0006030chitin metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008061chitin binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006030 chitin metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0008061 chitin binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060538 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top