TCONS_00060536 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060536
Unique NameTCONS_00060536
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length578

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060536 ID=TCONS_00060536|Name=TCONS_00060536|organism=Clytia hemisphaerica|type=transcript|length=578bp
GTGTCAACATGTCATAGGAACAAAGTCAAGATTAGAGTACGTTCAATTCG
ATTTGGAGAATGATGATGAATGGGTGGCAGGAGAAACAGCTTTTGAAGAA
CCATCAGCTTATGGTGAAATCACCAAGGACAAGAAACATCTTAAACTGTA
TCATTGCTACTATGAACCAATACCAAGCTGTGGAGTACCAACATTCGGTT
CGAACAGTATCGATTACAACCAGAGTGAATTCAATGTGGGTCACAAACTT
AACTACGCTTGTCCACGTGGTTTTTCAAATGCAGGTGATTCGAATGATGT
ATGTTTGGTGGAAGAAATGTGGTCCAGTCTGGAAGGTGCTAACTGTGAAG
ATATCAACGAATGCGTCAGTAAAAACAAGGTCACTCGTCACCAATGCCAC
CGCAAAGCGAACTGTTACAATACACCTGGTTCTTATCGATGCAAATGTAA
TCCTGGTTGGCAAGGCAACGGAAGAAACTGTTATTTCACAAATTGTACGC
GACCAAAGCCTATAGCGAATGGTGAATTGAGATTCTCCAGCGACAGCAGA
ACATTCTTACTGAACGACCAAGTATCTT
Run BLAST on NCBI

protein sequence of TCONS_00060536-protein

>TCONS_00060536-protein ID=TCONS_00060536-protein|Name=TCONS_00060536-protein|organism=Clytia hemisphaerica|type=polypeptide|length=192bp
CQHVIGTKSRLEYVQFDLENDDEWVAGETAFEEPSAYGEITKDKKHLKLY
HCYYEPIPSCGVPTFGSNSIDYNQSEFNVGHKLNYACPRGFSNAGDSNDV
CLVEEMWSSLEGANCEDINECVSKNKVTRHQCHRKANCYNTPGSYRCKCN
PGWQGNGRNCYFTNCTRPKPIANGELRFSSDSRTFLLNDQVS
Run BLAST on NCBI

transcript from alignment at scaffold_344:242303..245381+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060536 ID=TCONS_00060536|Name=TCONS_00060536|organism=Clytia hemisphaerica|type=transcript|length=3079bp|location=Sequence derived from alignment at scaffold_344:242303..245381+ (Clytia hemisphaerica)
GTGTCAACATGTCATAGGTTTGTTTTAAAGTAAACCCTTAGATTTCGAGG
GACgcgataaaaattttaaagtttaagAGTTTTGACCATAGCTCTTTTAC
ACTTAGTTTAAAGGGGTTTAAGCCGAATGCTTTTATTAAAGGTATAAATA
GAATTTAAATGGTACCCAAAAATGTGCTCATATAATTCTCAAGACAATAA
GCTTTTATGTCATTTCGAAATTATACTGACTAACAATCCGAAATTAACAA
CCTTTACacctcatttttctcacttgTAATTCCCTCTAAGACTGTCTGAG
ACCATGGAACTCCACTAAATTCATTAATCAGAACCaaaaaattttaccaa
aatccTAATCTTATTAAGTCCATTGATAACCAAACAACCTTAAAAATAAA
TCTAACGTGATGAGATGGGCGTCCTTTTCTTGTTCTTTTAACCAGGTTAG
AAAAAGAGATTTTCTTCCTTTCTAGGAACAAAGTCAAGATTAGAGTACGT
TCAATTCGATTTGGAGAATGATGATGAATGGGTGGCAGGAGAAACAGCTT
TTGAAGAACCATCAGCTTATGGTGAAATCACCAAGGACAAGAAACATCTT
AAACTGTATCATTGCTACTATGAACCAAGTAAGAATAAATTGAAGTCGTT
TTATCAAGACTATCTTCATTAGATTAGATCATGAAATCTGACgtgatttt
tcgaaaatctgacgTGATTTTCAATCTTTACCACTTTGATTCTCTTGCAA
ATCCATAAAATTAAATCCTCCCTCACCGCTATCAGAGGAATAGAATTAAA
ATCCGTATCCAAACAAATTTTTCAGTACCAAGCTGTGGAGTACCAACATT
CGGTTCGAACAGTATCGATTACAACCAGAGTGAATTCAATGTGGGTCACA
AACTTAACTACGCTTGTCCACGTGGTTTTTCAAATGCAGGTGATTCGAAT
GATGTATGTTTGGTGGAAGAAATGTGGTCCAGTCTGGAAGGTGCTAACTG
TGAAGGTAATTGAATTGTGATAATAGACCTATCAACCTGGAGCCTGGGCT
CGAGTTTACCTGGAAGTATGACGTCAAAATGTCTAAAGTCATTTTCATTA
TagaccaaaaattttgacgtcaaatcctTGTAAATTCATCACCTAACCTC
CTCAAAAGCCGATCGCACCGTtaagggttgataggtgtaAAGACTAAACT
TAAAGGCAACCCGTTTCTTTGGCAATGAACTCTCCTCCCTACTGGTGGAA
ATCACTGAAAACtgaaattgaataaaatttaaaatccaaGTCATTTAAAA
CAACAGATTTCCCATTCCATGTTTTTNGAAATCACTGAAAactaaaattg
aataaaattgaaaatccaAGTCATTTAAAACAAgagatttaaaaaattcc
atgtttttTTCACCGATAACCGATGAATTCTCACCGAGTCGTTTTTGATA
CAGGAATGTGTCTAAAGGTAAAATTCGTATGATAACACAGTGTAGTATTT
TCTATCAGTTTTATAATCCCAGTTTTCAGAATCTGATATTTCCGACAGCA
CGCAGTGTCAATTTAAGATATATAACTTTAGAAGCATTGGGTAGTTTCAG
AATAAAACCTTTACACCCCTGTGAGCGACAGGGttttttgtatacttttt
tatttcgaaatcctgagaaattttgaaaaaggttttggAAATTGCAGGAT
TTTCCTAATTATTTGGTCCTTATCAGAAAATccagtttttcaaaagtaaa
ttgttacgGAAAATCCATGTCGTTTACTATAACTGGAACCGCCCATTGTT
GGGACAATAGCTCTAGATAGTCAATACCTTCACTTCACTCTATATACTTC
TCTTAAATTGAAGATATCAACGAATGCGTCAGTAAAAACAAGGTCACTCG
TCACCAATGCCACCGCAAAGCGAACTGTTACAATACACCTGGTTCTTATC
GATGCAAATGTAATCCTGGTTGGCAAGGCAACGGAAGAAACTGTTATTGT
AAGTAAAATGGTTGTTGCAACCACTGTTTTGGAAGCTCGGGATTGTAATT
GATCACAGGCCCGGCGGGACAGAGCCGTAAAAGTGGAGAGTCTGAAgtct
caaaatgagataaaattcgttAGGAATTCGAGaataaaattgcaaaaaag
tgggggaaTGAGCTGgatttttacaagatacttcactaattggtcattta
aagtgatagagatgacgcgtcctttagaaaaagtaataagattcttttat
tgcatcttaacgaccaaccaaatcaaataagagcttgtaaaaaccccagc
ttgtcccaaagtggggaggctgaattCTCTCCAGTCTCCCCACTTCCGTC
AGGCCTGCATCATCAGTGGTCATCAACACTGTCCTAACATTTAGCCAATT
CAAGGAGGTCCTCCAGCGTACCTTcaattcatgaaatttttattcgcaat
tcacgcaatttctgttcacgcaaaattttccatctcacgcattcacgcag
tctcttttatttttttcatgcatTCACACAAGTGAAAAAGCTTTGGCATC
AGTTTGAACCTTTCGACCTTTTTGTTAAGGGTACAATATGCAAGATACAA
AAGAATCTTTCTACAAAGTTTTGGATTGTTTCGGTATTTTTGGCAAAGTT
CAAAACGAATTCAAGCAACATACCCCTTTTATGATCCAAAacatatacac
cttttcgactgtagccgccaattgccaaGCGAACATTCTTTTTGCCATTC
TTTTTGCCCTAAAActgtcccagtctttttttcgcatcTATAGACAATAG
ACAAAGGTATAAAAAAAGGATTgtatcgagtttagggggataattaaata
attaagtagCACGCGCTTTACCGCGCGATcattgaaaaggtgtattgctt
TTATAGTTAACTTTTACTAAAGACTCTTCAGTCTTCATTACAGCTTGTTT
CAAGTAGATAATATCTTCCTACAAATCTATTTTCAGTCACAAATTGTACG
CGACCAAAGCCTATAGCGAATGGTGAATTGAGATTCTCCAGCGACAGCAG
AACATTCTTACTGAACGACCAAGTATCTT

Coding sequence (CDS) from alignment at scaffold_344:242303..245381+

>TCONS_00060536 ID=TCONS_00060536|Name=TCONS_00060536|organism=Clytia hemisphaerica|type=CDS|length=2880bp|location=Sequence derived from alignment at scaffold_344:242303..245381+ (Clytia hemisphaerica)
TGTCAACATGTCATAGGAACAAAGTCAAGATTAGAGTACGTTCAATTCGA
TTTGGAGAATGATGATGAATGGGTGGCAGGAGAAACAGCTTTTGAAGAAC
CATCAGCTTATGGTGAAATCACCAAGGACAAGAAACATCTTAAACTGTAT
CATTGCTACTATGAACCAATACCAAGCTGTGGAGTACCAACATTCGGTTC
GAACAGTATCGATTACAACCAGAGTGAATTCAATGTGGGTCACAAACTTA
ACTACGCTTGTCCACGTGGTTTTTCAAATGCAGGTGATTCGAATGATGTA
TGTTTGGTGGAAGAAATGTGGTCCAGTCTGGAAGGTGCTAACTGTGAAGA
TATCAACGAATGCGTCAGTAAAAACAAGGTCACTCGTCACCAATGCCACC
GCAAAGCGAACTGTTACAATACACCTGGTTCTTATCGATGCAAATGTAAT
CCTGGTTGGCAAGGCAACGGAAGAAACTGTTATTTCACAAATTGTACGCG
ACCAAAGCCTATAGCGAATGGTGAATTGAGATTCTCCAGCGACAGCAGAA
CATTCTTACTGAACGACCAAGTATCTTGTCAACATGTCATAGGAACAAAG
TCAAGATTAGAGTACGTTCAATTCGATTTGGAGAATGATGATGAATGGGT
GGCAGGAGAAACAGCTTTTGAAGAACCATCAGCTTATGGTGAAATCACCA
AGGACAAGAAACATCTTAAACTGTATCATTGCTACTATGAACCAATACCA
AGCTGTGGAGTACCAACATTCGGTTCGAACAGTATCGATTACAACCAGAG
TGAATTCAATGTGGGTCACAAACTTAACTACGCTTGTCCACGTGGTTTTT
CAAATGCAGGTGATTCGAATGATGTATGTTTGGTGGAAGAAATGTGGTCC
AGTCTGGAAGGTGCTAACTGTGAAGATATCAACGAATGCGTCAGTAAAAA
CAAGGTCACTCGTCACCAATGCCACCGCAAAGCGAACTGTTACAATACAC
CTGGTTCTTATCGATGCAAATGTAATCCTGGTTGGCAAGGCAACGGAAGA
AACTGTTATTTCACAAATTGTACGCGACCAAAGCCTATAGCGAATGGTGA
ATTGAGATTCTCCAGCGACAGCAGAACATTCTTACTGAACGACCAAGTAT
CTTGTCAACATGTCATAGGAACAAAGTCAAGATTAGAGTACGTTCAATTC
GATTTGGAGAATGATGATGAATGGGTGGCAGGAGAAACAGCTTTTGAAGA
ACCATCAGCTTATGGTGAAATCACCAAGGACAAGAAACATCTTAAACTGT
ATCATTGCTACTATGAACCAATACCAAGCTGTGGAGTACCAACATTCGGT
TCGAACAGTATCGATTACAACCAGAGTGAATTCAATGTGGGTCACAAACT
TAACTACGCTTGTCCACGTGGTTTTTCAAATGCAGGTGATTCGAATGATG
TATGTTTGGTGGAAGAAATGTGGTCCAGTCTGGAAGGTGCTAACTGTGAA
GATATCAACGAATGCGTCAGTAAAAACAAGGTCACTCGTCACCAATGCCA
CCGCAAAGCGAACTGTTACAATACACCTGGTTCTTATCGATGCAAATGTA
ATCCTGGTTGGCAAGGCAACGGAAGAAACTGTTATTTCACAAATTGTACG
CGACCAAAGCCTATAGCGAATGGTGAATTGAGATTCTCCAGCGACAGCAG
AACATTCTTACTGAACGACCAAGTATCTTGTCAACATGTCATAGGAACAA
AGTCAAGATTAGAGTACGTTCAATTCGATTTGGAGAATGATGATGAATGG
GTGGCAGGAGAAACAGCTTTTGAAGAACCATCAGCTTATGGTGAAATCAC
CAAGGACAAGAAACATCTTAAACTGTATCATTGCTACTATGAACCAATAC
CAAGCTGTGGAGTACCAACATTCGGTTCGAACAGTATCGATTACAACCAG
AGTGAATTCAATGTGGGTCACAAACTTAACTACGCTTGTCCACGTGGTTT
TTCAAATGCAGGTGATTCGAATGATGTATGTTTGGTGGAAGAAATGTGGT
CCAGTCTGGAAGGTGCTAACTGTGAAGATATCAACGAATGCGTCAGTAAA
AACAAGGTCACTCGTCACCAATGCCACCGCAAAGCGAACTGTTACAATAC
ACCTGGTTCTTATCGATGCAAATGTAATCCTGGTTGGCAAGGCAACGGAA
GAAACTGTTATTTCACAAATTGTACGCGACCAAAGCCTATAGCGAATGGT
GAATTGAGATTCTCCAGCGACAGCAGAACATTCTTACTGAACGACCAAGT
ATCTTGTCAACATGTCATAGGAACAAAGTCAAGATTAGAGTACGTTCAAT
TCGATTTGGAGAATGATGATGAATGGGTGGCAGGAGAAACAGCTTTTGAA
GAACCATCAGCTTATGGTGAAATCACCAAGGACAAGAAACATCTTAAACT
GTATCATTGCTACTATGAACCAATACCAAGCTGTGGAGTACCAACATTCG
GTTCGAACAGTATCGATTACAACCAGAGTGAATTCAATGTGGGTCACAAA
CTTAACTACGCTTGTCCACGTGGTTTTTCAAATGCAGGTGATTCGAATGA
TGTATGTTTGGTGGAAGAAATGTGGTCCAGTCTGGAAGGTGCTAACTGTG
AAGATATCAACGAATGCGTCAGTAAAAACAAGGTCACTCGTCACCAATGC
CACCGCAAAGCGAACTGTTACAATACACCTGGTTCTTATCGATGCAAATG
TAATCCTGGTTGGCAAGGCAACGGAAGAAACTGTTATTTCACAAATTGTA
CGCGACCAAAGCCTATAGCGAATGGTGAATTGAGATTCTCCAGCGACAGC
AGAACATTCTTACTGAACGACCAAGTATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038077XLOC_038077Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060536-exon-scaffold_344-1491911889:242303..242319TCONS_00060536-exon-scaffold_344-1491911889:242303..242319Clytia hemisphaericaexon
TCONS_00060536-exon-scaffold_344-1510915933:242303..242319TCONS_00060536-exon-scaffold_344-1510915933:242303..242319Clytia hemisphaericaexon
TCONS_00060536-exon-scaffold_344-1575043694:242303..242319TCONS_00060536-exon-scaffold_344-1575043694:242303..242319Clytia hemisphaericaexon
TCONS_00060536-exon-scaffold_344-1491911889:242778..242930TCONS_00060536-exon-scaffold_344-1491911889:242778..242930Clytia hemisphaericaexon
TCONS_00060536-exon-scaffold_344-1510915933:242778..242930TCONS_00060536-exon-scaffold_344-1510915933:242778..242930Clytia hemisphaericaexon
TCONS_00060536-exon-scaffold_344-1575043694:242778..242930TCONS_00060536-exon-scaffold_344-1575043694:242778..242930Clytia hemisphaericaexon
TCONS_00060536-exon-scaffold_344-1491911889:243128..243307TCONS_00060536-exon-scaffold_344-1491911889:243128..243307Clytia hemisphaericaexon
TCONS_00060536-exon-scaffold_344-1510915933:243128..243307TCONS_00060536-exon-scaffold_344-1510915933:243128..243307Clytia hemisphaericaexon
TCONS_00060536-exon-scaffold_344-1575043694:243128..243307TCONS_00060536-exon-scaffold_344-1575043694:243128..243307Clytia hemisphaericaexon
TCONS_00060536-exon-scaffold_344-1491911889:244166..244300TCONS_00060536-exon-scaffold_344-1491911889:244166..244300Clytia hemisphaericaexon
TCONS_00060536-exon-scaffold_344-1510915933:244166..244300TCONS_00060536-exon-scaffold_344-1510915933:244166..244300Clytia hemisphaericaexon
TCONS_00060536-exon-scaffold_344-1575043694:244166..244300TCONS_00060536-exon-scaffold_344-1575043694:244166..244300Clytia hemisphaericaexon
TCONS_00060536-exon-scaffold_344-1491911889:245289..245381TCONS_00060536-exon-scaffold_344-1491911889:245289..245381Clytia hemisphaericaexon
TCONS_00060536-exon-scaffold_344-1510915933:245289..245381TCONS_00060536-exon-scaffold_344-1510915933:245289..245381Clytia hemisphaericaexon
TCONS_00060536-exon-scaffold_344-1575043694:245289..245381TCONS_00060536-exon-scaffold_344-1575043694:245289..245381Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060536-proteinTCONS_00060536-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_344supercontigscaffold_344:242303..245381 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	1.35971	1.27295	0.567141	0.301069	0.681859	0.25613	0.511548	0.996089	0.873515	1.5233	0	0.591826	1.32866	1.0695	1.02255	1.22424	0.551194	1.00223	2.16777	1.01341	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000742EGF-like_dom
IPR001881EGF-like_Ca-bd_dom
IPR000436Sushi_SCR_CCP_dom
IPR018097EGF_Ca-bd_CS
IPR000152EGF-type_Asp/Asn_hydroxyl_site
IPR013032EGF-like_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060536 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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