TCONS_00060533 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060533
Unique NameTCONS_00060533
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3255

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060533 ID=TCONS_00060533|Name=TCONS_00060533|organism=Clytia hemisphaerica|type=transcript|length=3255bp
ctgATTTCGACATTGACGAATTTCAAGCATCTTCTGGTATGCTACCAACA
GACAATTTCAACCCACCTGACCCTAACCTAGCAGCTCTACAACAATCCAA
TATGCAGACACCTGGTAGTCCAGCTGCTTCACAAATGCAACCATCACCAC
AAATGCAACCTCAGGCAACACCGGAATTGACAACTCTTCAACCAGCTTTA
AACCAAAACTCAATCACCGCTGTCAAAGTCAAGCTCTTCTACAAAGGTGA
TGAAATGGGCGAGAAAATCGTTGACAACCCGCGCGGTCTACGTATCGCTT
TCAATCCGCCACCGCCCCTCCCTGATGATGTGGTCCGCCAAGACGCTTCT
GAAGTCGTGTCCCACATTTATGGACCATTTCAAGCTGAGCAAATTTATTT
CCCTCCTAGTCAGAACCCAGAGATTATCAATGTTCTAGAAATGACCAAAA
GAGGGCTCGTGTTGCAGGCTAGGAATGGAGAAATATTGGCAACCCGTCTA
TGTCGAGCTAAGATTTTTTATTCCGACTCGACGACGCCCAGTATAGAGCC
TCGAGAGTTACCTCGTGAGCACACGACACCTATTTTCGATTACGTAAATG
ACTTTTTACCAAAGTTTAAGCAATACGTTCAAGGGCAAGGTCCACTCCCG
ACCGCTGAGCGTTATTTTTCGTTCGCGCAACGGTGCCCGAATCAGCAATC
CATCAGTAACCTGTTTGTGTACGTCAGCGTGACACATGTACTCGCGCAAC
GGCAAATCAATCAAGTGCAATCACAAACCAATGATATCTTAGTATCCGAT
CCTAACATGTTAGACTTTATCGCCGCACAAATTGAAGGCTTAAGCATTGA
TAACACTGGAATTAATCCACTTTAGATAATTGTTGAATTGGACATTGAAA
TAATATGTTGGTTGGTTAATTCTGGTTAATTATACAAAATACTAATACAA
TGACaatattaaagaatttttttaatggCATTTGGTATGCTTTTGGTAAT
ACTATGCCATACCTTAATGTCCTTAATTTTTGCGCACTGCCACTGCCACT
TTTTAGTCACTTAGTCTAAAGGTATTATCGagaatctttaaaagaaaatc
aatttagatcctttttcaaaatagttttaaatcGTATTTTATGATATATT
ATGACAAGATACTCAACAAAGTCATAAAAGAAGCAATATAACTTGTGTCT
CGCAATTAATCatgactttttataaaaatatgttATTCATAGTACAGTGg
agcctctaattagcggacactattGGGGAAACAGATTAGTGTTCGCTAAT
tagagtgtccgccttttggagacttttttatgaggatttgactagaaaAC
GGCCAGAAAAAAGTATGTAAAATATGTAAAGAGAAACAAATTTTAGGATG
CGcgaaaattgataataataggcatgcgcgaaaattaaagggtgCGTGAA
AGGTCGTTTTTAAGGGGTGCGCGAAAATTAAGGGCATTAAGGTACTTGGA
AATATATAATAATGATGAATAATCCTCGTTGCTTCGAGGTTGTCTTGTGG
ATAATGCTGGTaactcatttttttcattcaacagaATAGGATGTAGTTGT
TGTTCATACTAAAAACGATTCATCAGATTGTGGCTCTTATACTGAAAAAG
TTATGTAATACCTATCCCTTTAATGCATTTTACTAAAAACGATTTTTTAC
CATTTGGGAgtcaataaatttttcattgacTTTAATATATCTATTCGTCT
GTTTTTGGAAGGACTTCTCGTATGAATAACTCCGTAAGTTGTCGTAACTC
CATCGGTTGAGTCATGTAGCACTTAGTATTGATGGTAATGGTTCAGGAGG
AAACAGTTACTCAAAAGAAGGTTTGTTGGGAGACTCTTGgaaattattta
ttgatttttttgcttgtgAATCCTGCTTGATTCATGATTTGATACTGAAA
ATGCGTAAAGTTTTACTCTTCCTCTAGGTAGAGCACTCAAACTATAGGCT
TGAGTAACGAATAGATTTTCTGTgatattatttttacattttatttttaa
atttaacaTTATTTTATACTTTAGTAGTTTAGACTTTTTAgttattttct
tatatttcaTTTTGTAGTAGTTTTAATAATGCGAGGCTATCCAATTTTTG
CGTAAGACTTTGGCTACTTTAAGAACAAATAAAGAACCTTAAAGAAACCT
TAAAATCTCGTCATAACTGAGATAGATGAGTTCTTGAATATACTTGAATT
GGAAAACGAGCCTCATATTTTTACATCATTGATCTAGTAAAAAGTGAATA
TTCAACGATAAACTATCACaaggattaatttttgcgttGGGTCACCTGAG
ATAACATTTTGGAAACAAAGGTACTTAAACTTTATAATTTTCTGTGGTCG
TTGCACAATTTAAGCCTTTTTTGACCTTTATGAtttatattttggtgttt
ttagttGACAATTTTGCCCAAATACTCTGCTTTCAGTTTGTCTTGTGACT
ATTCTTTTAAtaatttctaggaaaccttgaAGAATGTATTTATTATCATT
GATCGAATTTTATACGGTTTACTAACAAGGAAGggtataattttctttta
agtttttctaagttttttatttaaaattagcAACATTTAATTTGATGTAT
TAGTGATATTCTTCATTGTAGCGACTtcaaagattacatcattttcATGT
ATATTTAATTGGCTGCAGAATAAACATGACACTCTGTAATATTCAGTGAA
TTTGCTAAGATCTTTGCAGGATTAATGTTCCCTCTGTATGACCTGCCGTA
AGGAATTCTTGATATCCGTGAGCCATTTTCtaacggaaacacccgaaaaa
atccGGGAAATACGGTGGTCAAAATCTTTTTGCGGGTGCCTCCGTTAGAA
AATATGACACCATCTTGACTTAGAGGCATATCAAGGATATCATCAATACA
AATTGAAACATCGtttaaattttttagttttaagcatttttttttcatag
aatctttctttaaaatgtcatcttgGCTATCTTTTAAATGTCAGGTCTTT
CCACACAACAAGCTGACCAAAATGTGCACAAAATCTTTGAAACCTTTCTT
TAGAGGGTTTGCAAAGGCTttataagttttatttttgaattttctttata
tATTATCTGGTCTTTTTTTGTATATTAATGAATATTATCTTACTTTTTAC
TCGATATGTTTTTAACTCTACTTTGTACTGTACTTAGGATCaaattaaat
gttga
Run BLAST on NCBI

transcript from alignment at scaffold_344:189080..198346+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060533 ID=TCONS_00060533|Name=TCONS_00060533|organism=Clytia hemisphaerica|type=transcript|length=9267bp|location=Sequence derived from alignment at scaffold_344:189080..198346+ (Clytia hemisphaerica)
ctgATTTCGACATTGACGTAAGTTGACCAACTAATTCTTCCCTCTGAAAT
TTTGTTCTTTCGTATTTGTTTTTCCACTTATCCCTGCGTAAGGTTTGGTT
AATATTGATGTCGAAAAGGGCAAACCTAATATGATAAGGAcctataatat
atattttttacaatcttactaccgggtgacccacgaaaaagttcggacag
tTTTCGGCGTctcgaggccgaacaaatgtctcaaagtgcttgaaatttta
atatgtaGAAAGTAGATATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNCCACCATACACTTTCTAGCATATTCCAGGCAAA
CCCACACTCTCTGTTCTTTCATAAGACGCgacattttcataaagaagcaa
attttgcctatttgcaaaatatttttgataaaaatatttagaataaattt
atataaatctaCTTCGTTGTTAATTTGTTATTTTACAGACTTTAATTAAC
TACAACACTAATCAACGAGGTCTTAAAACATCAGCACACTCGAAAAACAC
AAtgttaaagataaaaaaacaattataatttgatacctcatttttgacgt
gtttttgcactttccgataattgaattttgactttaaaagctcacaAATG
AAGAACCgctgaaccaaatttaaaaagtaatatctcaaagtttaagttag
agcatcctctatcttaaaaaaaaaagattgacttTATATTACCTTTATTT
CAGACCCTANgctcaaagtttaagttagagcatcctctatcttaaaaaaa
agattaagtttatattacttttatttcagACCCTAGCCAACGAAaaccgt
ccgaactttttcgtgggtcacccggtatactaaatgagtttatgaaaatt
ttttgtaacgctagcccagcatTAAGAGACATCTCCGTCTATCACGACGG
GCTTCGCATAGCCGTAAGAGTATAATAGGTAATCTATTAGCGTTATGGGg
gagaagtcgttgcagtgtaaatcttttgcaaatttaaaaacccactttcc
cgtggaaataattgacgttttttgtttttttgggacccttggggcacaag
gtacctgttgaccgcaaaaattccaaaattcgcgaattgaccgttgacaa
aaTTAGGAGTAAAGGGATcgaatgacgtcacagatttgggaaaaacttca
aaatgcgatatctcgagtttgagaaggagttgggaggtcgttgacccctc
attggatcgaggaTTCTATGTGGGAGGCTTGAGTGTGACTTTGacatttg
gctgaatttttaggcgttttctcttgatgacgtcatcaaaaggaaaaatc
gaaaaattcgatatctcgagattggaaaagAGTTAGAAGATTCCCTCATT
GGATTTGggtaaatgacaaattgatttcagcGAAGTCAATTTATTgacct
ttcgatgacgtcatttagggcTCAAATGATGTCACAAAACATTAAATATG
CAAACTTCAATCAGTTATAAGTGataatatttcgttctttgggcTTAGAA
TTCAAGCTTATTACCATCCCCCGAATTTTAGAAGGCGTGGCACTTTCTAC
GAAAAAGTtagtaaaatttgaatttttaaatagtCAATGCGCAGGTAAAA
AACGGAGGTCTTCCGCGCGAGACCTGGATATAAAATGTTGTCCCGCAAGT
TTAGATATGTCCATGATTGCTTTGAGATCAAAGTATTTATTATTTGGTCT
TTTAAAGCGTGTCATTTCGCCCTTAAATTCGTAAATACagcattattttc
ttttccattCTTATGCACTGATGATACATTGTTTTCGATTAAATTGAAAT
CGCCTTCAAACTTCTggaagaaactctcataattgACAGTTTACTGTTTA
CTAAGCTAATTTTATGGTGAAGACTtcaagcaggggggggggggaagcag
ttagtacaagacatcatgccggttagNNNNNNNNNNNNNNNNNNNNNNNN
NTACTAACTTCTTCCGAGAAAGCAgttagtaggcatgatgtcttgtacta
actgcttcacccccccccctgcttcaAGTCATATTCTCACATTCAATTTG
AAGCATAGAAAAGTATTTACGAGAAATGTTCTAACTACTAGATATACTCC
TGTGGTTGATGAAaatcaatgtttagaaaaaggggttacgcgcgctccag
aacgcttaagtacgttcctccactctgtttgcgttGCAAATAATAGTGAG
GTTANtttgccaaattttggtactaactgtgtaaaaaataggattctgtg
agaaaatttaaaaaaaaagaccatattttaccaaaaaaaagttatgggaa
gtagatttttttttcaaattttcgaatttttttttaaaaatcttaaaaac
aatttgctggttgcaatagaaatttgattttctaaaatNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcatgtagtcatacac
gaaccttgaattttgaaaatggttgagtgatatataggaacttagtcgac
cgcgcgcacattataccaAAGGAGACGCGCTGCGCGCGTAACTAATTCGA
ATTCCCCTTAAAAGTAAAGTTAGAGAACATCAGCAAtaccatctttatca
tcctaagggcttttgatgcgcacactaaaccggcgtttgcgacgacggga
accgtctactTGTATCTGTATATTTTCTCTTGTTGTTGTAGAAGTCATAT
AACTTTCCAAAATTCcatattttatctaaaaatcCCTGTTATTACTTTAC
AGGAATTTCAAGCATCTTCTGGTATGCTACCAACAGACAATTTCAACCCA
CCTGACCCTAACCTAGCAGCTCTACAACAATCCAATATGCAGACACCTGG
TAGTCCAGCTGCTTCACAAATGCAACCATCACCACAAATGCAACCTCAGG
CAACACCGGAATTGACAACTCTTCAACCAGCTTTAAACCAAAACTCAAGT
AGGTGTAGCGGATGAAAATTCACATTTTAAAACGCCGACGATGTTTTCTT
GCTCTTCCTGTGGTGGGAGGAATTTCCAGGCAAAAATTGGAGAGGGTCAA
AAAAGATTTAACATGTTCGGGTTGAAAGGGATCCTTTCTATACCAATGAT
AGTTCCTTAGCATCAAGGGCTTGCCAAATACTGAGTCGCCTCATTTTTCT
ATTTAATGTTCATTcatatttaaagtatttttttgtttttaatgttatta
ttttcaacaATTCATTTTGTTACAGTCACCGCTGTCAAAGTCAAGCTCTT
CTACAAAGGTGATGAAATGGGCGAGAAAATCGTTGACAACCCGCGCGGTC
TACGTATCGCTTTCAATCCGCCACCGCCCCTCCCTGATGATGTGGTCCGC
CAAGACGCTTCTGAAGTCGTGTCCCACATTTATGGACCATTTCAAGCTGA
GCAAATTTATTTCCCTCCTAGTCAGAACCCAGAGATTATCAATGTTCTAG
AAATGACCAAAAGAGGGCTCGTGTTGCAGGCTAGGAATGGAGAAATATTG
GCAACCCGTCTATGTCGAGCTAAGATTTTTTATTCCGACTCGACGACGCC
CAGTATAGAGCCTCGAGAGTTACCTCGTGAGCACACGACACCTATTTTCG
ATTACGTAAATGACTTTTTACCAAAGTTTAAGCAATACGTTCAAGGGCAA
GGTCCACTCCCGACCGCTGAGCGTTATTTTTCGTTCGCGCAACGGTGCCC
GAATCAGCAATCCATCAGTAACCTGTTTGTGTACGTCAGCGTGACACATG
TACTCGCGCAACGGCAAATCAATCAAGTGCAATCACAAACCAATGATATC
TTAGTATCCGATCCTAACATGTTAGACTTTATCGCCGCACAAATTGAAGG
CTTAAGCATTGATAACACTGGAATTAATCCACTTTAGATAATTGTTGAAT
TGGACATTGAAATAATATGTTGGTTGGTTAATTCTGGTTAATTATACAAA
ATACTAATACAATGACaatattaaagaatttttttaatggCATTTGGTAT
GCTTTTGGTAATACTATGCCATACCTTAATGTCCTTAATTTTTGCGCACT
GCCACTGCCACTTTTTAGTCACTTAGTCTAAAGGTATTATCGagaatctt
taaaagaaaatcaatttagatcctttttcaaaatagttttaaatcGTATT
TTATGATATATTATGACAAGATACTCAACAAAGTCATAAAAGAAGCAATA
TAACTTGTGTCTCGCAATTAATCatgactttttataaaaatatgttATTC
ATAGTACAGTGgagcctctaattagcggacactattGGGGAAACAGATTA
GTGTTCGCTAATtagagtgtccgccttttggagacttttttatgaggatt
tgactagaaaACGGCCAGAAAAAAGTATGTAAAATATGTAAAGAGAAACA
AATTTTAGGATGCGcgaaaattgataataataggcatgcgcgaaaattaa
agggtgCGTGAAAGGTCGTTTTTAAGGGGTGCGCGAAAATTAAGGGCATT
AAGGTACTTGGAAATATATAATAATGATGAATAATCCTCGTTGCTTCGAG
GTTGTCTTGTGGATAATGCTGGTaactcatttttttcattcaacagaATA
GGATGTAGTTGTTGTTCATACTAAAAACGATTCATCAGATTGTGGCTCTT
ATACTGAAAAAGTTATGTAATACCTATCCCTTTAATGCATTTTACTAAAA
ACGATTTTTTACCATTTGGGAgtcaataaatttttcattgacTTTAATAT
ATCTATTCGTCTGTTTTTGGAAGGACTTCTCGTATGAATAACTCCGTAAG
TTGTCGTAACTCCATCGGTTGAGTCATGTAGCACTTAGTATTGATGGTAA
TGGTTCAGGAGGAAACAGTTACTCAAAAGAAGGTTTGTTGGGAGACTCTT
GgaaattatttattgatttttttgcttgtgAATCCTGCTTGATTCATGAT
TTGATACTGAAAATGCGTAAAGTTTTACTCTTCCTCTAGGTAGAGCACTC
AAACTATAGGCTTGAGTAACGAATAGATTTTCTGTgatattatttttaca
ttttatttttaaatttaacaTTATTTTATACTTTAGTAGTTTAGACTTTT
TAgttattttcttatatttcaTTTTGTAGTAGTTTTAATAATGCGAGGCT
ATCCAATTTTTGCGTAAGACTTTGGCTACTTTAAGAACAAATAAAGAACC
TTAAAGAAACCTTAAAATCTCGTCATAACTGAGATAGATGAGTTCTTGAA
TATACTTGAATTGGAAAACGAGCCTCATATTTTTACATCATTGATCTAGT
AAAAAGTGAATATTCAACGATAAACTATCACaaggattaatttttgcgtt
GGGTCACCTGAGATAACATTTTGGAAACAAAGGTACTTAAACTTTATAAT
TTTCTGTGGTCGTTGCACAATTTAAGCCTTTTTTGACCTTTATGAtttat
attttggtgtttttagttGACAATTTTGCCCAAATACTCTGCTTTCAGTT
TGTCTTGTGACTATTCTTTTAAtaatttctaggaaaccttgaAGAATGTA
TTTATTATCATTGATCGAATTTTATACGGTTTACTAACAAGGAAGggtat
aattttcttttaagtttttctaagttttttatttaaaattagcAACATTT
AATTTGATGTATTAGTGATATTCTTCATTGTAGCGACTtcaaagattaca
tcattttcATGTATATTTAATTGGCTGCAGAATAAACATGACACTCTGTA
ATATTCAGTGAATTTGCTAAGATCTTTGCAGGATTAATGTTCCCTCTGTA
TGACCTGCCGTAAGGAATTCTTGATATCCGTGAGCCATTTTCtaacggaa
acacccgaaaaaatccGGGAAATACGGTGGTCAAAATCTTTTTGCGGGTG
CCTCCGTTAGAAAATATGACACCATCTTGACTTAGAGGCATATCAAGGAT
ATCATCAATACAAATTGAAACATCGtttaaattttttagttttaagcatt
tttttttcatagaatctttctttaaaatgtcatcttgGCTATCTTTTAAA
TGTCAGGTCTTTCCACACAACAAGCTGACCAAAATGTGCACAAAATCTTT
GAAACCTTTCTTTAGAGGGTTTGCAAAGGCTttataagttttatttttga
attttctttatatATTATCTGGTCTTTTTTTGTATATTAATGAATATTAT
CTTACTTTTTACTCGATATGTTTTTAACTCTACTTTGTACTGTACTTAGG
ATCaaattaaatgttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038074XLOC_038074Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060533-exon-scaffold_344-1491911889:189080..189096TCONS_00060533-exon-scaffold_344-1491911889:189080..189096Clytia hemisphaericaexon
TCONS_00060533-exon-scaffold_344-1510915933:189080..189096TCONS_00060533-exon-scaffold_344-1510915933:189080..189096Clytia hemisphaericaexon
TCONS_00060533-exon-scaffold_344-1575043694:189080..189096TCONS_00060533-exon-scaffold_344-1575043694:189080..189096Clytia hemisphaericaexon
TCONS_00060533-exon-scaffold_344-1491911889:194832..195027TCONS_00060533-exon-scaffold_344-1491911889:194832..195027Clytia hemisphaericaexon
TCONS_00060533-exon-scaffold_344-1510915933:194832..195027TCONS_00060533-exon-scaffold_344-1510915933:194832..195027Clytia hemisphaericaexon
TCONS_00060533-exon-scaffold_344-1575043694:194832..195027TCONS_00060533-exon-scaffold_344-1575043694:194832..195027Clytia hemisphaericaexon
TCONS_00060533-exon-scaffold_344-1491911889:195305..198346TCONS_00060533-exon-scaffold_344-1491911889:195305..198346Clytia hemisphaericaexon
TCONS_00060533-exon-scaffold_344-1510915933:195305..198346TCONS_00060533-exon-scaffold_344-1510915933:195305..198346Clytia hemisphaericaexon
TCONS_00060533-exon-scaffold_344-1575043694:195305..198346TCONS_00060533-exon-scaffold_344-1575043694:195305..198346Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_344supercontigscaffold_344:189080..198346 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.132812	0.0506836	0.0691056	0	0	0	0	0.040288	0.192859	0.0837703	0.143744	0.134729	0.128903	0.275212	0.420652	0.337764	0.0947888	0.18566	0.0472836	0.492171	0.162054	0.0658302	0.16739	0	0	0.158314	0.107653	0.117141	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060533 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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