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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060526 ID=TCONS_00060526|Name=TCONS_00060526|organism=Clytia hemisphaerica|type=transcript|length=1740bpRun BLAST on NCBI transcript from alignment at scaffold_344:65813..73829+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060526 ID=TCONS_00060526|Name=TCONS_00060526|organism=Clytia hemisphaerica|type=transcript|length=8017bp|location=Sequence derived from alignment at scaffold_344:65813..73829+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00060526 vs. Swiss-Prot (Human)
Match: FBX15 (F-box only protein 15 OS=Homo sapiens GN=FBXO15 PE=2 SV=2) HSP 1 Score: 63.5438 bits (153), Expect = 3.108e-17 Identity = 54/213 (25.35%), Postives = 107/213 (50.23%), Query Frame = 3
Query: 792 VLEKDGDIAFVGMTTTIENLLLKTQEGSSNRVWSAPPHQVIPDDVNPSYGLHGYSVRICLRNSRKTFYENEYS--FHKNGRWEDDWLSFIHQTIENPLYDDFYYDIKEQIKFSWKSGPINGRIDNLMILDVQLKDMNEELIWDSSELVLMKETEEDTDFSNYI--VYEMTTEESHRKTLIRVLQDPXXXXXXXXXXXXXXRKSVINEWFGTKY 1418
V +K+ ++AFV +L+ ++ GS+ + PPH DD +P YGLHGY + + L + + + F K G E+ + I ++N + + + ++ SWK+ +G I + ++DV L D + + W S V ++ +D S+++ Y + ++ + + ++ ++E LI++L ++L + IN WFGT+Y
Sbjct: 302 VWKKEEELAFVMANLHFHHLVERSTLGSATIPYELPPHSPFLDD-SPEYGLHGYQLHVDLHSGGVFYLCGTFRNLFTKRGNIENGHVKLIVIHLKN---NREHLPLIGKVGLSWKTDIFDGCIKSCSMMDVTLLDEHGKPFWCFSSPVCLRSPATPSDSSSFLGQTYNVDYVDAEGRVHVELVWIRETEEYLIVNLVLYLSIAKINHWFGTEY 510 HSP 2 Score: 43.8986 bits (102), Expect = 3.108e-17 Identity = 46/204 (22.55%), Postives = 82/204 (40.20%), Query Frame = 2
Query: 239 VPNEALHCIFKYLTFSDLLRCNCVCKAWKDVAEIQSLWHKVFRFLPKPCQELSTKAKTTGCKDWKKEALFCVKERRQNYYKKLMSSNQLHSRKKKRA-----------------EATRTLGTRWLLEIQEKGPSKPHQYFADE-DFIFSFHNLTARWNNMNDVPSLSKVKSISLYAVTPLLFDENMKPIENSICTRSLLASHRF 796
+P+E L IF YL LL CV + + +A +W ++ P + S + K + V+++ Y+KK + Q+ S K A EA R G W + ++EKG +Y + D + ++T W P L+ + ++ L +TP+ D P ++ + SL+A +
Sbjct: 77 MPSEILLKIFSYLDAVSLLCTGCVSRRFYHLANDNFIWIGIYSTAFSPAR--SNWKFNSVEKIAMSMSFLSVQDKEAGYWKKEYITKQIASVKAALADILKPVNPYTGLPVKTKEALRIFGLGWAIILKEKGGK---EYIMEHVDLSINDTSVTVIWYG-KKWPCLASLSTLDLCGMTPVFTDWYKTPTKHRLRWHSLIAKYNL 274 The following BLAST results are available for this feature:
BLAST of TCONS_00060526 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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