|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060525 ID=TCONS_00060525|Name=TCONS_00060525|organism=Clytia hemisphaerica|type=transcript|length=2186bp
Aagcttttttccaaaattctcaaatatttgtttaaatttttctagtgaag
taaaaagaaaatcaaatacaATGCCTTTCACAGAAGAGCAATTAAAAGGG
TTTCTGGAAAACCTTTTGAAAggtcaaggaaagattgaaaatgttgaatt
taTCCATTCAACCTCTTTGATAGCCAGCAGTTCAAAAGGTGTAATAATTC
AATATGCTAACGGCACAACCAAAAAGCTTCATTTAAAGCTTTGTGAAGAT
GGTACAACTCCTGGATTCTTAAATgacaaattgaaaatatttgaacgaGA
AGAATTCTTTTACAGCAGTCTCTTACCAGAAATGATCAAATTTCAGATAG
AAAATAAAACAGATGAGAAATTAAACCATGAAAACAGTATCAAGTCATTG
TTCTTCCCATACCATGGTAGCCATCATGTTGAAGGGGCCggtattgttgt
tgttttggatCGTTTCTCACCAGAAGAATATTTTGTGACCAAACCTGAGG
AGTTTCACACTTTACAGCAAATACATCATTGTATGAAGAAGATAGCAGCT
TTTCATGCTGTATCATACTCAATGAAAATCAAGAAAGTTGTCGATTGGAA
TAATTACAGCCCATACCTCCCTGATGTTCTTTTCCATCCTTTAACTGAAg
atgtctcaaaaacctattTCAGTAGCATCTTTGCAAGTAATTTGAAAATC
TTACGTGCCATCAAGGAGGAAATTAAAAATGGAAATCAACTGGTTGAAGA
CTGTATTCTGAGTTTCAATTCATTATCTGCTGGTATATTGGACAGAATTG
AGAAGTTGATACCAATGTTGCCTAAAATTCTAACCAAAACTCTGGAATGC
CCTGATGAATTACTTATTGTGACCCATGGAGATTTTCATATGTGGAATAT
TGCATTTGCTAACAAAGGTGAAATGGAAGCCAAATTCTTTGACTTCCAAA
TGTTACGTACAACATCAGGATTGGTTGATGTACACCATTTATTATCACAA
GTCTGCACGCCTGCTACAAGGAATCAGCATTTGTACAAATTTTTAAACAC
ATATCACAAGTCTTTTAAACAGGAGTGTTTGGATCTAGGCTTGGAGGAAT
CACAGATTGATTACTCTTTAGAGGCGATAAATAAAGAGTATGTCATGCGT
TCACCTTGGGGTTTTGTGTTTGGTTTCTGTTTCATTTTACCAAGATTCTT
ATCAAGCAAACAGCTATCACAAGAGTTTTATGccaaattaaatgactttg
aaagCAGTAGCAGCATTGTGGAATGGATTTCTAAAAACGCGAGTCCAAAT
GTGTGGAGTGTTTTGGATATGTATGTGGACATGGTGCAGATAGATGATGA
TCTGGGTACCTTAGAAATCATGGAGAAATATACTCAATAGCCTCTGGctc
tttttaagtttttttcaaattagctacaatttgttttttaaaagcttACC
AGATTGATTTTTTTACCAGAAAGACATTAGACAAAATGCATTTTATAGTA
GGTGTCTGTTTTCCTGATTAGAAGTTGAGGTTtggccaaaatcaaaattt
attaggACTCCGCTCTGttctttattgattttgtaagttttaagtgttaa
aaatgttaaaaaaagtactttttcgTATACAAAGCAATCTAAGATGAAAT
AAACTTCTTCTGATTGTTTATTGAAATTAAACCACTACCATTAGCTGGAA
ATATTGTTACCAAATCTAATCCTGCTCGTTTGAAATCTACTTAGATTACG
AATTAGTTTTTAACtttaagatgaaaataaaacttgttactctaggggct
gagttaggtcccgtatgcgcatcggcgtatagtcattttttcttttgatc
atgaaagtatagtccttgaagagtcagaaaacgtgtNcatttcaaaaaat
caaaatcgaaagtgcttcatatctgcagataacgaaattttcagaccatg
gttctgacatttttcttaatcagcataaaatttgtgattgattggtatat
aatatgtctatgtttaaagtttaaaaattttttttttcaagcaagagggc
taaaaagggttgaaaatctaaaatccgccattatggaaatttgtgcctga
tccaaataacgccacacacgttttctgactcttcaaggactatactttca
tgatcaaaagaaaaaatgactatacgccgatgtgca Run BLAST on NCBI protein sequence of TCONS_00060525-protein >TCONS_00060525-protein ID=TCONS_00060525-protein|Name=TCONS_00060525-protein|organism=Clytia hemisphaerica|type=polypeptide|length=462bp
SFFPKFSNICLNFSSEVKRKSNTMPFTEEQLKGFLENLLKGQGKIENVEF
IHSTSLIASSSKGVIIQYANGTTKKLHLKLCEDGTTPGFLNDKLKIFERE
EFFYSSLLPEMIKFQIENKTDEKLNHENSIKSLFFPYHGSHHVEGAGIVV
VLDRFSPEEYFVTKPEEFHTLQQIHHCMKKIAAFHAVSYSMKIKKVVDWN
NYSPYLPDVLFHPLTEDVSKTYFSSIFASNLKILRAIKEEIKNGNQLVED
CILSFNSLSAGILDRIEKLIPMLPKILTKTLECPDELLIVTHGDFHMWNI
AFANKGEMEAKFFDFQMLRTTSGLVDVHHLLSQVCTPATRNQHLYKFLNT
YHKSFKQECLDLGLEESQIDYSLEAINKEYVMRSPWGFVFGFCFILPRFL
SSKQLSQEFYAKLNDFESSSSIVEWISKNASPNVWSVLDMYVDMVQIDDD
LGTLEIMEKYTQ Run BLAST on NCBI transcript from alignment at scaffold_344:59306..64057+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060525 ID=TCONS_00060525|Name=TCONS_00060525|organism=Clytia hemisphaerica|type=transcript|length=4752bp|location=Sequence derived from alignment at scaffold_344:59306..64057+ (Clytia hemisphaerica)
Aagcttttttccaaaattctcaaatatttgtttaaatttttctagtgaag
taaaaagaaaatcaaatacaATGCCTTTCACAGAAGAGCAATTAAAAGGG
TTTCTGGAAAACCTTTTGAAAggtcaaggaaagattgaaaatgttgaatt
taTCCATTCAACCTCTTTGATAGCCAGCAGTTCAAAAGGTGTAATAATTC
AATATGCTAACGGCACAACCAAAAAGCTTCATTTAAAGCTTTGTGAAGAT
GGTACAACTCCTGGATTCTTAAATgacaaattgaaaatatttgaacgaGA
AGAATTCTTTTACAGCAGTCTCTTACCAGAAATGATCAAATTTCAGATAG
AAAATAAAACAGATGAGAAATTAAACCATGAAAACAGTATCAAGTCATTG
TTCTTCCCATACCATGGTAGCCATCATGTTGAAGGGGCCggtattgttgt
tgttttggatCGTTTCTCACCAGAAGAATATTTTGTGACCAAACCTGAGG
AGTTTCACACTTTACAGCAAATACATCATTGTATGAAGAAGATAGCAGCT
TTTCATGCTGTATCATACTCAATGAAAATCAAGAAAGTTGTCGATTGGAA
TAATTACAGCCCATACCTCCCTGATGTTCTTTTCCATCCTTTAACTGAAg
atgtctcaaaaacctattTCAGTAGCATCTTTGCAAGTAATTTGAAAATC
TTACGTGCCATCAAGGAGGAAATTAAAAATGGAAATCAACTGGTTGAAGA
CTGTATTCTGAGTTTCAATTCATTATCTGCTGGTATATTGGACAGAATTG
AGAAGTTGATACCAATGTTGCCTAAAATTCTAACCAAAACTCTGGAATGC
CCTGATGAATTACTTATTGTGACCCATGGAGATTTTCATATGTGGAATAT
TGCATTTGCTAACAAAGGTGAAATGGAAGCCAAATTCTTTGACTTCCAAA
TGTTACGTACAACATCAGGATTGGTTGATGTACACCATTTATTATCACAA
GTCTGCACGCCTGCTACAAGGAATCAGCATTTGTACAAATTTTTAAACAC
ATATCACAAGTCTTTTAAACAGGAGTGTTTGGATCTAGGCTTGGAGGAAT
CACAGATTGATTACTCTTTAGAGGCGATAAATAAAGAGTATGTCATGCGT
TCACCTTGGGGTTTTGTGTTTGGTTTCTGTTTCATTTTACCAAGATTCTT
ATCAAGCAAACAGCTATCACAAGAGTTTTATGccaaattaaatgactttg
aaagCAGTAGCAGCATTGTGGAATGGATTTCTAAAAACGCGAGTCCAAAT
GTGTGGAGTGTTTTGGATATGTATGTGGACATGGTGCAGATAGATGATGA
TCTGGGTACCTTAGAAATCATGGAGAAATATACTCAATAGCCTCTGGctc
tttttaagtttttttcaaattagctacaatttgttttttaaaagcttACC
AGATTGATTTTTTTACCAGAAAGACATTAGACAAAATGCATTTTATAGTA
GGTGTCTATTTTCCTAATTAGAAGTTGAGGTTtggccaaaatcaaaattt
attaggACTCCGCTCTGttctttattgattttgtaagttttaagtgttaa
aaatgttaaaaaaaaggacTTTTTCGTATACAAAGCAATCTAAGATGAAA
TAAACTTCTTCTGAttgtttattgaaatttcaaaccaCCACcattagctt
gaaatattgataCCAAATCTAATCAGCTGCTCGTTTGAAATCTACTTAGA
TTACGAATTAGTTTTTAACtttaagatgaaaataaaacttGTGATACAAA
TCCATATTCATGTTATTAGTTGTAATACAAAAACGAAACGTCCAAAATAT
ATTTAGTTTCTGGAGATTAGATTAGCTTTTTATTTGGACTTGCATTTGCA
TATTTTTACAGtggaatatatttttaaaattttgatttaagaaataaaat
tatttttatgcaGTTTTAATGTCTCCTTGATTCACTTTTATCAACCTTTC
AATGTCATATTCTGCTTTTTAATTGTCTTATTAAAATCAGATCGTATTCA
GTTATTGTTATCAATCTTCACTGAAATGCCAGCAAGATTTCATTCTTTGT
ccataaaatataaatttcaataattttaatttccccaatttttaaaattt
acacTTGGAACACAGTTATTTTCAATTTAGAACTAGAAGCATANATGTCT
TTTCGAGTTCTAATGAagcttttttccaaaattctcaaatatttgtttaa
atttttctagtgaagtaaaaagaaaatcaaatacaATGCCTTTCACAGAA
GAGCAATTAAAAGGGTTTCTGGAAAACCTTTTGAAAggtcaaggaaagat
tgaaaatgttgaatttaTCCATTCAACCTCTTTGATAGCCAGCAGTTCAA
AAGGTGTAATAATTCAATATGCTAACGGCACAACCAAAAAGCTTCATTTA
AAGCTTTGTGAAGATGGTACAACTCCTGGATTCTTAAATgacaaattgaa
aatatttgaacgaGAAGAATTCTTTTACAGCAGTCTCTTACCAGAAATGA
TCAAATTTCAGATAGAAAATAAAACAGATGAGAAATTAAACCATGAAAAC
AGTATCAAGTCATTGTTCTTCCCATACCATGGTAGCCATCATGTTGAAGG
GGCCggtattgttgttgttttggatCGTTTCTCACCAGAAGAATATTTTG
TGACCAAACCTGAGGAGTTTCACACTTTACAGCAAATACATCATTGTATG
AAGAAGATAGCAGCTTTTCATGCTGTATCATACTCAATGAAAATCAAGAA
AGTTGTCGATTGGAATAATTACAGCCCATACCTCCCTGATGTTCTTTTCC
ATCCTTTAACTGAAgatgtctcaaaaacctattTCAGTAGCATCTTTGCA
AGTAATTTGAAAATCTTACGTGCCATCAAGGAGGAAATTAAAAATGGAAA
TCAACTGGTTGAAGACTGTATTCTGAGTTTCAATTCATTATCTGTTGGTA
TATTGGATAGAATTGAGAAGTTGATACCAATGTTGCCTAAAATTCTAACC
AAAACTCTGGAATGCCCTGATGAATTACTTATTGTGACCCATGGAGATTT
TCATATGTGGAATATTGCATTTGCTAACAAAGGTGAAATGGAAGCCAAAT
TCTTTGACTTCCAAATGTTACGTACAACATCAGGATTGGTTGATGTACAC
CATTTATTATCACAAGTCTGCACGCCTGCNaaagatttttttttttgact
ttaaacatagacaaattatataccaatcgatcacaaattttatgctgatt
aagaaaaaggtcagaatcatggtctgaaaatttcgttttctggagatatg
aagctttttcgatttcgattttttgtaatgactacttttggttccagatt
tgcgtggctgtaacatttgattggctcacttaatttacttgaaattttcg
gagggtcttgcctactgttcaaataatgaaattcaggaaaagtttttttt
ctacatgaatttcgaaatccataatggcggattcaaaattttctttcgtc
acatgggctcttaggctctNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNta
gcagagcctaagagcccatgtgacgaaagaaagttttgaatccaccatta
tggatttcgaaattcatgtagaaaaataaattttcctgaattttattatt
tgaacggtaggcaagaccctccgaNTTTTTTCAAATTAGCTACAATCTGT
TTTTTAAAAGCTTACCAGATTGATTTTTTTACCAGAAAGACATTAGACAA
AATGCATTTTATAGTAGGTGTCTGTTTTCCTGATTAGAAGTTGAGGTTtg
gccaaaatcaaaatttattaggACTCCGCTCTGttctttattgattttgt
aagttttaagtgttaaaaatgttaaaaaaagtactttttcgTATACAAAG
CAATCTAAGATGAAATAAACTTCTTCTGATTGTTTATTGAAATTAAACCA
CTACCATTAGCTGGAAATATTGTTACCAAATCTAATCCTGCTCGTTTGAA
ATCTACTTAGATTACGAATTAGTTTTTAACtttaagatgaaaataaaact
tgttactctaggggctgagttaggtcccgtatgcgcatcggcgtatagtc
attttttcttttgatcatgaaagtatagtccttgaagagtcagaaaacgt
gtNcatttcaaaaaatcaaaatcgaaagtgcttcatatctgcagataacg
aaattttcagaccatggttctgacatttttcttaatcagcataaaatttg
tgattgattggtatataatatgtctatgtttaaagtttaaaaattttttt
tttcaagcaagagggctaaaaagggttgaaaatctaaaatccgccattat
ggaaatttgtgcctgatccaaataacgccacacacgttttctgactcttc
aaggactatactttcatgatcaaaagaaaaaatgactatacgccgatgtg
ca Coding sequence (CDS) from alignment at scaffold_344:59306..64057+ >TCONS_00060525 ID=TCONS_00060525|Name=TCONS_00060525|organism=Clytia hemisphaerica|type=CDS|length=1389bp|location=Sequence derived from alignment at scaffold_344:59306..64057+ (Clytia hemisphaerica)
agcttttttccaaaattctcaaatatttgtttaaatttttctagtgaagt
aaaaagaaaatcaaatacaATGCCTTTCACAGAAGAGCAATTAAAAGGGT
TTCTGGAAAACCTTTTGAAAggtcaaggaaagattgaaaatgttgaattt
aTCCATTCAACCTCTTTGATAGCCAGCAGTTCAAAAGGTGTAATAATTCA
ATATGCTAACGGCACAACCAAAAAGCTTCATTTAAAGCTTTGTGAAGATG
GTACAACTCCTGGATTCTTAAATgacaaattgaaaatatttgaacgaGAA
GAATTCTTTTACAGCAGTCTCTTACCAGAAATGATCAAATTTCAGATAGA
AAATAAAACAGATGAGAAATTAAACCATGAAAACAGTATCAAGTCATTGT
TCTTCCCATACCATGGTAGCCATCATGTTGAAGGGGCCggtattgttgtt
gttttggatCGTTTCTCACCAGAAGAATATTTTGTGACCAAACCTGAGGA
GTTTCACACTTTACAGCAAATACATCATTGTATGAAGAAGATAGCAGCTT
TTCATGCTGTATCATACTCAATGAAAATCAAGAAAGTTGTCGATTGGAAT
AATTACAGCCCATACCTCCCTGATGTTCTTTTCCATCCTTTAACTGAAga
tgtctcaaaaacctattTCAGTAGCATCTTTGCAAGTAATTTGAAAATCT
TACGTGCCATCAAGGAGGAAATTAAAAATGGAAATCAACTGGTTGAAGAC
TGTATTCTGAGTTTCAATTCATTATCTGCTGGTATATTGGACAGAATTGA
GAAGTTGATACCAATGTTGCCTAAAATTCTAACCAAAACTCTGGAATGCC
CTGATGAATTACTTATTGTGACCCATGGAGATTTTCATATGTGGAATATT
GCATTTGCTAACAAAGGTGAAATGGAAGCCAAATTCTTTGACTTCCAAAT
GTTACGTACAACATCAGGATTGGTTGATGTACACCATTTATTATCACAAG
TCTGCACGCCTGCTACAAGGAATCAGCATTTGTACAAATTTTTAAACACA
TATCACAAGTCTTTTAAACAGGAGTGTTTGGATCTAGGCTTGGAGGAATC
ACAGATTGATTACTCTTTAGAGGCGATAAATAAAGAGTATGTCATGCGTT
CACCTTGGGGTTTTGTGTTTGGTTTCTGTTTCATTTTACCAAGATTCTTA
TCAAGCAAACAGCTATCACAAGAGTTTTATGccaaattaaatgactttga
aagCAGTAGCAGCATTGTGGAATGGATTTCTAAAAACGCGAGTCCAAATG
TGTGGAGTGTTTTGGATATGTATGTGGACATGGTGCAGATAGATGATGAT
CTGGGTACCTTAGAAATCATGGAGAAATATACTCAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060525-exon-scaffold_344-1491911889:59306..60806 | TCONS_00060525-exon-scaffold_344-1491911889:59306..60806 | Clytia hemisphaerica | exon |
| TCONS_00060525-exon-scaffold_344-1510915933:59306..60806 | TCONS_00060525-exon-scaffold_344-1510915933:59306..60806 | Clytia hemisphaerica | exon |
| TCONS_00060525-exon-scaffold_344-1575043694:59306..60806 | TCONS_00060525-exon-scaffold_344-1575043694:59306..60806 | Clytia hemisphaerica | exon |
| TCONS_00060525-exon-scaffold_344-1491911889:63373..64057 | TCONS_00060525-exon-scaffold_344-1491911889:63373..64057 | Clytia hemisphaerica | exon |
| TCONS_00060525-exon-scaffold_344-1510915933:63373..64057 | TCONS_00060525-exon-scaffold_344-1510915933:63373..64057 | Clytia hemisphaerica | exon |
| TCONS_00060525-exon-scaffold_344-1575043694:63373..64057 | TCONS_00060525-exon-scaffold_344-1575043694:63373..64057 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_344 | supercontig | scaffold_344:59306..64057 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
|
