TCONS_00060523 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060523
Unique NameTCONS_00060523
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length288

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060523 ID=TCONS_00060523|Name=TCONS_00060523|organism=Clytia hemisphaerica|type=transcript|length=288bp
CTCAGGTTAAGTATCTTATATTGTAAGTATTGTAGAAAACAGGCCAGGTG
CTATCTTTTTTACAGCATTCTTTTTGCTCTTTTCTACTAGAAGATAAGAT
TCCCTTTCCTGACTGCTAAAGATTACTGCCACTTTTCTACCGGAAAAAGA
TCAGAACTCAGGGTAGTTGAGAAATGAGCTTTAGAAAGTTAGGCAGAAAA
TCATAGATTACCAAAACGTGCCGAAACAGATTTGCATAgttacgaccctg
cctatgccccggacagtccggggtttttttgttgcgtg
Run BLAST on NCBI

transcript from alignment at scaffold_344:55770..56057+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060523 ID=TCONS_00060523|Name=TCONS_00060523|organism=Clytia hemisphaerica|type=transcript|length=288bp|location=Sequence derived from alignment at scaffold_344:55770..56057+ (Clytia hemisphaerica)
CTCAGGTTAAGTATCTTATATTGTAAGTATTGTAGAAAACAGGCCAGGTG
CTATCTTTTTTACAGCATTCTTTTTGCTCTTTTCTACTAGAAGATAAGAT
TCCCTTTCCTGACTGCTAAAGATTACTGCCACTTTTCTACCGGAAAAAGA
TCAGAACTCAGGGTAGTTGAGAAATGAGCTTTAGAAAGTTAGGCAGAAAA
TCATAGATTACCAAAACGTGCCGAAACAGATTTGCATAgttacgaccctg
cctatgccccggacagtccggggtttttttgttgcgtg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038069XLOC_038069Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060523-exon-scaffold_344-1491911889:55770..56057TCONS_00060523-exon-scaffold_344-1491911889:55770..56057Clytia hemisphaericaexon
TCONS_00060523-exon-scaffold_344-1510915933:55770..56057TCONS_00060523-exon-scaffold_344-1510915933:55770..56057Clytia hemisphaericaexon
TCONS_00060523-exon-scaffold_344-1575043694:55770..56057TCONS_00060523-exon-scaffold_344-1575043694:55770..56057Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_344supercontigscaffold_344:55770..56057 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.457116	0.883721	3.0989	1.0224	1.22455	1.47464	0.578312	0.544006	1.90601	0.470077	1.84639	3.00796	1.81675	1.92692	0.764829	1.09963	1.34498	0	1.43312	1.02011	0.43755	3.88242	1.53711	1.40985	1.95882	0	2.46284	1.99578	3.48964	1.55057
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060523 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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