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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060516 ID=TCONS_00060516|Name=TCONS_00060516|organism=Clytia hemisphaerica|type=transcript|length=1244bp
TTACCTATTTGGTGGTCTCAAGCTGTTCGTCGTCTGTGTCATTTCAGATG
GCCCCTTTCCCGTGTTCGATCCCACATACATAGACTCAGTTCAGGAGTAC
TATACAGAGTGTTAAAGTCTGGCAGGTTAACATCGATAAGATCTAAAACA
CCGATTTCTGAACTGAATCGAATCCGTAAACAAAATGATGGTCTCTATAA
CCGGAAATCTTGCCTACCCGGCTACGAATCTTACATGAAAACAACGGAAG
TATCACCTGTCCGGACTTCATTTGCATGGAAATGCATCCCATGCGAACCC
GGATATGCAAAATCATCGCATAGTAATCACTCTTGTAAGGCTTGTACCCA
ATATTTTGAGCCAAATGCTGATAAAACCTTTTGCATTGATCCCTACACGA
ATTATTATTTGAACTTCGATAGGCACAGTATCTACATCTTTATATTTTGC
AATGGAGCTGTATCATTGTTTCTATGTATCGCTCTTGTTATTTTCATCGT
TAAACGAGATACACCTCTTGTCCGATCCTCAGACCTCCCGTTGACTCTTA
CGCAAATCTGTGCTCATCTGATCGTCTCTATAAACCTACCTCTGACATTT
ATCGGCAAACCAACGGTCTCAAAATGTATTCCGATGTTTAGTGCAACCGG
CTCATTCTTGATATTCGCAAATACAATCACTCTAACTAGAAGCcataaat
ttgtttacattttcaagCAAATGAGACGTTTATCACAGAATCATGTtaag
aaaactcaaaccatgcATTATTCCTCGTTGGTATTTTTTCAGCTACTCTA
CATCGTGTCTTGTGTCTTTATATCATGGTCGCAGAATGAGTGGATTAAAG
AAACAATATATCCTGAAACTAAACGACGTGAGATTTATTGTAACGTAACC
ATCCAAATGAAAGGTCTTAACTGTTATTTAATGTTGATCGTTTTGGGTTC
TTTCATACAGTGCTTTCGTGCACGAAAATTGCCGAAAAATCTGAACGAAT
CTAAACGTATTTTGTATTCGTCCTTTCTAAAATTTGTACTACTCGCCGTA
CACTTTCCTATATGGTATGGACAGAAAACCGATCTCGATCGCGCTTCCGT
ACGACTGTTTGCGTTAGCCCTGTTTAACGCGTTTGATGTGATCTTCAAAA
TTGGTTATATGGTATTTATCGTTTATTTTCGAGCTGATCGAAATACGAAA
GAATCGTttcgaaaagaaatttttgacaGTATACGATCAAGGTG Run BLAST on NCBI protein sequence of TCONS_00060516-protein >TCONS_00060516-protein ID=TCONS_00060516-protein|Name=TCONS_00060516-protein|organism=Clytia hemisphaerica|type=polypeptide|length=414bp
LPIWWSQAVRRLCHFRWPLSRVRSHIHRLSSGVLYRVLKSGRLTSIRSKT
PISELNRIRKQNDGLYNRKSCLPGYESYMKTTEVSPVRTSFAWKCIPCEP
GYAKSSHSNHSCKACTQYFEPNADKTFCIDPYTNYYLNFDRHSIYIFIFC
NGAVSLFLCIALVIFIVKRDTPLVRSSDLPLTLTQICAHLIVSINLPLTF
IGKPTVSKCIPMFSATGSFLIFANTITLTRSHKFVYIFKQMRRLSQNHVK
KTQTMHYSSLVFFQLLYIVSCVFISWSQNEWIKETIYPETKRREIYCNVT
IQMKGLNCYLMLIVLGSFIQCFRARKLPKNLNESKRILYSSFLKFVLLAV
HFPIWYGQKTDLDRASVRLFALALFNAFDVIFKIGYMVFIVYFRADRNTK
ESFRKEIFDSIRSR Run BLAST on NCBI transcript from alignment at scaffold_343:142804..144047 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060516 ID=TCONS_00060516|Name=TCONS_00060516|organism=Clytia hemisphaerica|type=transcript|length=1244bp|location=Sequence derived from alignment at scaffold_343:142804..144047 (Clytia hemisphaerica)
CACCTTGATCGTATACtgtcaaaaatttcttttcgaaACGATTCTTTCGT
ATTTCGATCAGCTCGAAAATAAACGATAAATACCATATAACCAATTTTGA
AGATCACATCAAACGCGTTAAACAGGGCTAACGCAAACAGTCGTACGGAA
GCGCGATCGAGATCGGTTTTCTGTCCATACCATATAGGAAAGTGTACGGC
GAGTAGTACAAATTTTAGAAAGGACGAATACAAAATACGTTTAGATTCGT
TCAGATTTTTCGGCAATTTTCGTGCACGAAAGCACTGTATGAAAGAACCC
AAAACGATCAACATTAAATAACAGTTAAGACCTTTCATTTGGATGGTTAC
GTTACAATAAATCTCACGTCGTTTAGTTTCAGGATATATTGTTTCTTTAA
TCCACTCATTCTGCGACCATGATATAAAGACACAAGACACGATGTAGAGT
AGCTGAAAAAATACCAACGAGGAATAATgcatggtttgagttttcttaAC
ATGATTCTGTGATAAACGTCTCATTTGcttgaaaatgtaaacaaatttat
gGCTTCTAGTTAGAGTGATTGTATTTGCGAATATCAAGAATGAGCCGGTT
GCACTAAACATCGGAATACATTTTGAGACCGTTGGTTTGCCGATAAATGT
CAGAGGTAGGTTTATAGAGACGATCAGATGAGCACAGATTTGCGTAAGAG
TCAACGGGAGGTCTGAGGATCGGACAAGAGGTGTATCTCGTTTAACGATG
AAAATAACAAGAGCGATACATAGAAACAATGATACAGCTCCATTGCAAAA
TATAAAGATGTAGATACTGTGCCTATCGAAGTTCAAATAATAATTCGTGT
AGGGATCAATGCAAAAGGTTTTATCAGCATTTGGCTCAAAATATTGGGTA
CAAGCCTTACAAGAGTGATTACTATGCGATGATTTTGCATATCCGGGTTC
GCATGGGATGCATTTCCATGCAAATGAAGTCCGGACAGGTGATACTTCCG
TTGTTTTCATGTAAGATTCGTAGCCGGGTAGGCAAGATTTCCGGTTATAG
AGACCATCATTTTGTTTACGGATTCGATTCAGTTCAGAAATCGGTGTTTT
AGATCTTATCGATGTTAACCTGCCAGACTTTAACACTCTGTATAGTACTC
CTGAACTGAGTCTATGTATGTGGGATCGAACACGGGAAAGGGGCCATCTG
AAATGACACAGACGACGAACAGCTTGAGACCACCAAATAGGTAA Coding sequence (CDS) from alignment at scaffold_343:142804..144047 >TCONS_00060516 ID=TCONS_00060516|Name=TCONS_00060516|organism=Clytia hemisphaerica|type=CDS|length=1242bp|location=Sequence derived from alignment at scaffold_343:142804..144047 (Clytia hemisphaerica)
CCTTGATCGTATACtgtcaaaaatttcttttcgaaACGATTCTTTCGTAT
TTCGATCAGCTCGAAAATAAACGATAAATACCATATAACCAATTTTGAAG
ATCACATCAAACGCGTTAAACAGGGCTAACGCAAACAGTCGTACGGAAGC
GCGATCGAGATCGGTTTTCTGTCCATACCATATAGGAAAGTGTACGGCGA
GTAGTACAAATTTTAGAAAGGACGAATACAAAATACGTTTAGATTCGTTC
AGATTTTTCGGCAATTTTCGTGCACGAAAGCACTGTATGAAAGAACCCAA
AACGATCAACATTAAATAACAGTTAAGACCTTTCATTTGGATGGTTACGT
TACAATAAATCTCACGTCGTTTAGTTTCAGGATATATTGTTTCTTTAATC
CACTCATTCTGCGACCATGATATAAAGACACAAGACACGATGTAGAGTAG
CTGAAAAAATACCAACGAGGAATAATgcatggtttgagttttcttaACAT
GATTCTGTGATAAACGTCTCATTTGcttgaaaatgtaaacaaatttatgG
CTTCTAGTTAGAGTGATTGTATTTGCGAATATCAAGAATGAGCCGGTTGC
ACTAAACATCGGAATACATTTTGAGACCGTTGGTTTGCCGATAAATGTCA
GAGGTAGGTTTATAGAGACGATCAGATGAGCACAGATTTGCGTAAGAGTC
AACGGGAGGTCTGAGGATCGGACAAGAGGTGTATCTCGTTTAACGATGAA
AATAACAAGAGCGATACATAGAAACAATGATACAGCTCCATTGCAAAATA
TAAAGATGTAGATACTGTGCCTATCGAAGTTCAAATAATAATTCGTGTAG
GGATCAATGCAAAAGGTTTTATCAGCATTTGGCTCAAAATATTGGGTACA
AGCCTTACAAGAGTGATTACTATGCGATGATTTTGCATATCCGGGTTCGC
ATGGGATGCATTTCCATGCAAATGAAGTCCGGACAGGTGATACTTCCGTT
GTTTTCATGTAAGATTCGTAGCCGGGTAGGCAAGATTTCCGGTTATAGAG
ACCATCATTTTGTTTACGGATTCGATTCAGTTCAGAAATCGGTGTTTTAG
ATCTTATCGATGTTAACCTGCCAGACTTTAACACTCTGTATAGTACTCCT
GAACTGAGTCTATGTATGTGGGATCGAACACGGGAAAGGGGCCATCTGAA
ATGACACAGACGACGAACAGCTTGAGACCACCAAATAGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060516-exon-scaffold_343-1491911889:142804..144047 | TCONS_00060516-exon-scaffold_343-1491911889:142804..144047 | Clytia hemisphaerica | exon |
| TCONS_00060516-exon-scaffold_343-1510915933:142804..144047 | TCONS_00060516-exon-scaffold_343-1510915933:142804..144047 | Clytia hemisphaerica | exon |
| TCONS_00060516-exon-scaffold_343-1575043694:142804..144047 | TCONS_00060516-exon-scaffold_343-1575043694:142804..144047 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_343 | supercontig | scaffold_343:142804..144047 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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