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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060512 ID=TCONS_00060512|Name=TCONS_00060512|organism=Clytia hemisphaerica|type=transcript|length=3426bpRun BLAST on NCBI transcript from alignment at scaffold_343:161831..171967- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060512 ID=TCONS_00060512|Name=TCONS_00060512|organism=Clytia hemisphaerica|type=transcript|length=10137bp|location=Sequence derived from alignment at scaffold_343:161831..171967- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00060512 vs. Swiss-Prot (Human)
Match: TTC14 (Tetratricopeptide repeat protein 14 OS=Homo sapiens GN=TTC14 PE=1 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 2.444e-29 Identity = 98/332 (29.52%), Postives = 169/332 (50.90%), Query Frame = 2
Query: 269 PPICLEQFMQCPSNFRKQTFFENLKINNVIIGKLAVCSASGWTVKLLGVMEGQKRWIKDLQITA----RLVITKSXXXXXXXXXXXGDLVKALVEKVDVQSKDIWLTLEPSVAAKSQYQLPKLGKIQDPDTVEYLLESREFDEENDSAYLEHIRDSSL-FNHPHGVSLLASHFNVNQDHHGFVV----CNTLKIKETALELREKQMLDWSMSMVGIGVKHFREKNLKEAKKCLDKALSFYPKNVEGFVARGALKANQSDLKGAIDDFRKALEVNPHHRNGKKYLIETSLSLARSHEKEKRWKESSKCYHEIMKHDPDHKEAKERYHQIHQIL 1237
PP LEQFM+ PS R++ FF +++ +++IG+++ G+ + L+ + G R I L+ITA R V + S D Y+ GD+++A ++ +D + + ++L S + KLG I + Y S E + + +Y E++ SSL F +P V L +++ + ++ + A LR+KQ W++ V IGV +F+ +A +KAL +NVE VARGAL A + L AI+DF ALE P HRN +KYL +T + E+E+++ + Y + + D K+A++ ++H+ +
Sbjct: 102 PP--LEQFMEIPSMDRRELFFRDIERGDIVIGRISSIREFGFFMVLICLGSGIMRDIAHLEITALCPLRDVPSHSNHGDPLSYYQTGDIIRAGIKDIDRYHEKLAVSLYSSSLPPHLSGI-KLGVISSEELPLYYRRSVELNSNSLESY-ENVMQSSLGFVNPGVVEFLLEKLGIDESNPPSLMRGLQSKNFSEDDFASALRKKQSASWALKCVKIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERGGQLEEEEKFLNAESYYKKALALDETFKDAEDALQKLHKYM 429 The following BLAST results are available for this feature:
BLAST of TCONS_00060512 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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