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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060501 ID=TCONS_00060501|Name=TCONS_00060501|organism=Clytia hemisphaerica|type=transcript|length=503bp
ACAAAAATGaATGATCAGAGCAAAAGTGATGACGAGAAAATTATCAGAAA
GAGGATGGCAATAAGAGACTTGGAAGAAGATAAGCATCGTAAGAGAAGAT
AtgcttttttgaaagctttccaCGTCATCAAAAATCTTCCACCTGAGAAC
GAGGACTCTTATTGGAAAATTGCGTCCTTTAATGGTCAGCCTTTTACACA
TCCAAGAACAACTCCTCCAGAATCACTTAAAATGTGGGGCGCTGACAGCC
AACACCAAAATGTTCTTTTCCTCCCCTGGTACAGAGCTTATCTTTTACAT
CTTGAGGACGCTCTTGTGAGAAATGCCCCTGAAGATGGAGATTTAGTTGC
TTTGCATTACTGGGATGAAACATGGAAAGAGATAATAAAAAAGGATCCCA
AAAAGGCTAAACCACCTTTGCCAAATCTCTTGGTAAAAGAATTTGTGGAG
ATTGATGACGATGGAACCACGATTCCAAACCCTCTTCTCGGATTCAATCT
TCC Run BLAST on NCBI transcript from alignment at scaffold_343:139486..141182- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060501 ID=TCONS_00060501|Name=TCONS_00060501|organism=Clytia hemisphaerica|type=transcript|length=1697bp|location=Sequence derived from alignment at scaffold_343:139486..141182- (Clytia hemisphaerica)
ACAAAAATGGTAAGTCGAACTCATTATAAGAGTACCTAAATAACGGGGGG
GGGGCTGTGACAATCCAGGATGATAGAAGTTCTTAGTAACTATTCATAAA
TCCTACAAACGAAAATAGACTTTAAGAAATTCTTTATTCTTCTATCATTC
ACCTAGCCGTAACGTAATGTATAAAAAAAAATATATTTCTTTTTTTACAG
AATGATCAGAGCAAAAGTGATGACGAGAAAATTATCAGAAAGAGGTACGA
TCTATTTTTAAACCTTGTTTTTGAGTTTCCAAATCTTTAATTGAAGATTG
GTGGGGAAAGACCTTGGAATCTTGCGAAAGAGACTGTTGAGGAAAATGAT
AGTTTAGTGATGGTTCTGTTTTAAGGGATGCTTTACAAATAATATACCTT
ATTGGCCCTTTTTACGCCGGCCCTAATTTAACGCCGGTCCTTATTACGCC
ACAGCCTGATTTTGGGCTTACGCCAATTAGGGCCGTAAATAACGCCAAAC
TTTGTTAAATGGCTATTCATGCTTCAATTTACTTTAAAATATCTTTTTTC
AGTAGTAAACTGTTGAAAATTCCATTGAAAATCACTGATTTTTGCGAAGT
TTTATATGGAGTAAAACAATGGATAATTTTTTATCTTCGAATCATATACC
CAAAATCCTTTAAATTGAGAAAAATGGTAAAAAATTAACCGCATTTTTAA
GTAAAATTTGCCGGCCCACCAAGAGCCTAAAAATAACGCCAATAAGGGCC
GGCGTAAAAAGGGCCGATAAGGTAATACCGAGTCTAATATCTGAAGGATT
TACAAAGATTTTGACTCCAAAATACCTTAAATTTCATACTTTATCGTCGG
CAAAAAGTGACCTGAAAATCGCTATGTGACGAAATTTTTTACCGATTTTA
CGGATTACGAATATTTTTGCACACGATTATTTTTGCCGGTGAATATTTTT
TACTAAATGATTATTGGTTACTTTGAACATTTTTTTGTTTAAAAATTAAT
ACTTTCTTGTTAAATTATTCCTGCTTAAAGGAATAATTGCAATAATTGCT
CAGTTTATCTTTGTTTTTCAGCCTTGATTTCTCTATAAGGCCGATGTTAA
GCCAGAAAAAAATTTATCGGCAAAAACTGTTCGTCAGTAAAAAGTGACGA
AATTTGAATGTTTTTTACCTAAGAATTTTCTACTGATAAGGTACTTGCTT
CTTTTTCTTCAAAGTAATAATATTCATTTATCTTTTAATCGTCCTAGGAT
GGCAATAAGAGACTTGGAAGAAGATAAGCATCGTAAGAGAAGATATGCTT
TTTTGAAAGCTTTCCACGTCATCAAAAATCTTCCACCTGAGAACGAGGAC
TCTTATTGGAAAATTGCGTCCTTTAATGGTCAGCCTTTTACACATCCAAG
AACAACTCCTCCAGAATCACTTAAAATGTGGGGCGCTGACAGCCAACACC
AAAATGTTCTTTTCCTCCCCTGGTACAGAGCTTATCTTTTACATCTTGAG
GACGCTCTTGTGAGAAATGCCCCTGAAGATGGAGATTTAGTTGCTTTGCA
TTACTGGGATGAAACATGGAAAGAGATAATAAAAAAGGATCCCAAAAAGG
CTAAACCACCTTTGCCAAATCTCTTGGTAAAAGAATTTGTGGAGATTGAT
GACGATGGAACCACGATTCCAAACCCTCTTCTCGGATTCAATCTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060501-exon-scaffold_343-1575043694:141174..141182 | TCONS_00060501-exon-scaffold_343-1575043694:141174..141182 | Clytia hemisphaerica | exon |
| TCONS_00060501-exon-scaffold_343-1575043694:140939..140982 | TCONS_00060501-exon-scaffold_343-1575043694:140939..140982 | Clytia hemisphaerica | exon |
| TCONS_00060501-exon-scaffold_343-1575043694:139486..139935 | TCONS_00060501-exon-scaffold_343-1575043694:139486..139935 | Clytia hemisphaerica | exon |
| TCONS_00060501-exon-scaffold_343-1510915933:141174..141182 | TCONS_00060501-exon-scaffold_343-1510915933:141174..141182 | Clytia hemisphaerica | exon |
| TCONS_00060501-exon-scaffold_343-1510915933:140939..140982 | TCONS_00060501-exon-scaffold_343-1510915933:140939..140982 | Clytia hemisphaerica | exon |
| TCONS_00060501-exon-scaffold_343-1510915933:139486..139935 | TCONS_00060501-exon-scaffold_343-1510915933:139486..139935 | Clytia hemisphaerica | exon |
| TCONS_00060501-exon-scaffold_343-1491911889:141174..141182 | TCONS_00060501-exon-scaffold_343-1491911889:141174..141182 | Clytia hemisphaerica | exon |
| TCONS_00060501-exon-scaffold_343-1491911889:140939..140982 | TCONS_00060501-exon-scaffold_343-1491911889:140939..140982 | Clytia hemisphaerica | exon |
| TCONS_00060501-exon-scaffold_343-1491911889:139486..139935 | TCONS_00060501-exon-scaffold_343-1491911889:139486..139935 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_343 | supercontig | scaffold_343:139486..141182 - |
Blast
The following BLAST results are available for this feature:
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