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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060499 ID=TCONS_00060499|Name=TCONS_00060499|organism=Clytia hemisphaerica|type=transcript|length=1397bp
ATTCTTTTGACACAAAAATGAATAATCAGAGCAAAAGTGATGAAGAGAAA
ATTATCAGAAAGAGGATGGCAATAAGAGACTTGGAAGAAGATAAGCATCG
TAAGAGAAGATAtgcttttttgaaagctttccaCGTCATCAAAAATCTTC
CACCTGAGAACGAGGACTCTTATTGGAAAATTGCGTCCTTTAATGGTCAG
CCTTTTACACATCCAAGAACAACTCCTCCAGAATCACTTAAAATGTGGGG
CGCTGACAGCCAACACCAAAATGTTCTTTTCCTCCCCTGGTACAGAGCTT
ATCTTTTACATCTTGAGGAGGCTCTTGTGAGAAATGCCCCTGAAGATGGA
GATTTAGTTGCTTTGCATTACTGGGATGAAACATGGAAAGAGATAATCAA
AAAGGGTGAACCACCTTTGCCAAATCTCTTGGTAAAAGAATTTGTGGAGA
TTGATGACGATGGAACCACGATTTCAAACCCTCTTCTCGGATTCACTCTT
CCTAAAGCAATACCTTTATCCCAAGCAAcatcaaaatatgtcaaaccCGC
AGGTTATACAACATGTCGTTACCCATACTCAGGGCTCAGGAAGCCTGAAA
ATCCACTTCAAGAAACCTTCAACgccaaaatccaaaatgatTATGTCAAT
CATAATCTCCCAAAAAGTCCAACTTTTTATTTGCAAGAAAATATCACACA
TGCGTTAAAGCATTCCATCCACAAGAGTTATAAGGATTGCTtggaagttg
aaaaatataacaaGTTCTCAAACATCCAGTCAGGTAATCACAGTGTTGAG
CTGGCCAGTATCCAGATGCTTCAAGCGTTAGGTGGGACTGGTGAGTTTTC
CTTAATTGCTGGTTCCCATGGTGATTTAGGATCAAACGAAATGGCGGCTT
TCGATCCGCTTTTCTTCTTGCATATGTCAAATGTAGATCGCGTTTTTTGG
CTTTGGTATGAGAAATGGGCTCATAACGTAGATATGGGTATGAGTAAGCC
AGATAAAGGGGAGCAACCCAAATATGGTCAAGGACCCAGTCCAAACCAAA
CTGGGAATGAAGTGTTAACCGCAGATACGAATTTGTACCCGTTCAAGAAG
GCAGGAAAATACTTGAATAGGAATGAGCTTATGGATATCAAGGAACTAGG
TTACCACTATGAGAGAGGTTCTATGACCTTACCTGACCCCCCTCATGATT
AAATAACAGTCACAATAAGTGCAGTTGATtgtctctaattcgatcttcat
gaGACTGAAAACTTTCTTCGAATTAGGGAAAGATTGGAATTACTGAGAAG
CGGACCAATCGGACAAATATTTCAGTTCGAATTactgaaatattcgaatt
agagTGAGTCCAGTGTTATTGTTTTGATCCATTATTTTTAACACAGG Run BLAST on NCBI protein sequence of TCONS_00060499-protein >TCONS_00060499-protein ID=TCONS_00060499-protein|Name=TCONS_00060499-protein|organism=Clytia hemisphaerica|type=polypeptide|length=399bp
SFDTKMNNQSKSDEEKIIRKRMAIRDLEEDKHRKRRYAFLKAFHVIKNLP
PENEDSYWKIASFNGQPFTHPRTTPPESLKMWGADSQHQNVLFLPWYRAY
LLHLEEALVRNAPEDGDLVALHYWDETWKEIIKKGEPPLPNLLVKEFVEI
DDDGTTISNPLLGFTLPKAIPLSQATSKYVKPAGYTTCRYPYSGLRKPEN
PLQETFNAKIQNDYVNHNLPKSPTFYLQENITHALKHSIHKSYKDCLEVE
KYNKFSNIQSGNHSVELASIQMLQALGGTGEFSLIAGSHGDLGSNEMAAF
DPLFFLHMSNVDRVFWLWYEKWAHNVDMGMSKPDKGEQPKYGQGPSPNQT
GNEVLTADTNLYPFKKAGKYLNRNELMDIKELGYHYERGSMTLPDPPHD Run BLAST on NCBI transcript from alignment at scaffold_343:137303..141193- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060499 ID=TCONS_00060499|Name=TCONS_00060499|organism=Clytia hemisphaerica|type=transcript|length=3891bp|location=Sequence derived from alignment at scaffold_343:137303..141193- (Clytia hemisphaerica)
ATTCTTTTGACACAAAAATGGTAAGTCGAACTCATTATAAGAGTACCTAA
ATAACGGGGGGGGGGCTGTGACAATCCAGGATGATAGAAGTTCTTAGTAA
CTATTCATAAATCCTACAAACGAAAATAGACTTTAAGAAATTCTTTATTC
TTCTATCATTCACCTAGCCGTAACGTAATGTATAAAAAAAAATATATTTC
TTTTTTTACAGAATGATCAGAGCAAAAGTGATGACGAGAAAATTATCAGA
AAGAGGTACGATCTATTTTTAAACCTTGTTTTTGAGTTTCCAAATCTTTA
ATTGAAGATTGGTGGGGAAAGACCTTGGAATCTTGCGAAAGAGACTGTTG
AGGAAAATGATAGTTTAGTGATGGTTCTGTTTTAAGGGATGCTTTACAAA
TAATATACCTTATTGGCCCTTTTTACGCCGGCCCTAATTTAACGCCGGTC
CTTATTACGCCACAGCCTGATTTTGGGCTTACGCCAATTAGGGCCGTAAA
TAACGCCAAACTTTGTTAAATGGCTATTCATGCTTCAATTTACTTTAAAA
TATCTTTTTTCAGTAGTAAACTGTTGAAAATTCCATTGAAAATCACTGAT
TTTTGCGAAGTTTTATATGGAGTAAAACAATGGATAATTTTTTATCTTCG
AATCATATACCCAAAATCCTTTAAATTGAGAAAAATGGTAAAAAATTAAC
CGCATTTTTAAGTAAAATTTGCCGGCCCACCAAGAGCCTAAAAATAACGC
CAATAAGGGCCGGCGTAAAAAGGGCCGATAAGGTAATACCGAGTCTAATA
TCTGAAGGATTTACAAAGATTTTGACTCCAAAATACCTTAAATTTCATAC
TTTATCGTCGGCAAAAAGTGACCTGAAAATCGCTATGTGACGAAATTTTT
TACCGATTTTACGGATTACGAATATTTTTGCACACGATTATTTTTGCCGG
TGAATATTTTTTACTAAATGATTATTGGTTACTTTGAACATTTTTTTGTT
TAAAAATTAATACTTTCTTGTTAAATTATTCCTGCTTAAAGGAATAATTG
CAATAATTGCTCAGTTTATCTTTGTTTTTCAGCCTTGATTTCTCTATAAG
GCCGATGTTAAGCCAGAAAAAAATTTATCGGCAAAAACTGTTCGTCAGTA
AAAAGTGACGAAATTTGAATGTTTTTTACCTAAGAATTTTCTACTGATAA
GGTACTTGCTTCTTTTTCTTCAAAGTAATAATATTCATTTATCTTTTAAT
CGTCCTAGGATGGCAATAAGAGACTTGGAAGAAGATAAGCATCGTAAGAG
AAGATATGCTTTTTTGAAAGCTTTCCACGTCATCAAAAATCTTCCACCTG
AGAACGAGGACTCTTATTGGAAAATTGCGTCCTTTAATGGTCAGCCTTTT
ACACATCCAAGAACAACTCCTCCAGAATCACTTAAAATGTGGGGCGCTGA
CAGCCAACACCAAAATGTTCTTTTCCTCCCCTGGTACAGAGCTTATCTTT
TACATCTTGAGGACGCTCTTGTGAGAAATGCCCCTGAAGATGGAGATTTA
GTTGCTTTGCATTACTGGGATGAAACATGGAAAGAGATAATAAAAAAGGA
TCCCAAAAAGGCTAAACCACCTTTGCCAAATCTCTTGGTAAAAGAATTTG
TGGAGATTGATGACGATGGAACCACGATTCCAAACCCTCTTCTCGGATTC
AATCTTCCTAAAGCAATACCTTCATCCCAAGCAANCATTGGAAGGTTCTT
AAAAAAACCGAATTAAAAATCGTTATTTTCTCATTCTCAGCCTCAGCATG
TTTCTTAGATGTTTTTTTTAGTTTTTAGGCATTCTGAGCCTTATGTTTCT
TAAAAGTGTGTTTCTTAAAAAAAAAACGTGTAGTGTATAAAAAAATATAT
ATTACTTTTTTTACAGAATAATCAGAGCAAAAGTGATGAAGAGAAAATTA
TCAGAAAGAGGTACGATCTATGTTTCAAACCTTGTTTTTGAGTTTCCAAA
TCTTTAATTGAAGACTGATCAGGAAAGACCTGGAAATCTTGCGAACGAGG
CTGTTTTTTTAAAGTTGAGGAAAATGATAGTTTAAGGGAGGCTTTACAAA
TAATATAATACCGAGCCTAATAGATTTTGACTCCAAAATACCTTATATTT
TATACTTTATCGTCGGCAAAAATTGATTTGAAAATCGTTTTACCGTTAAA
TTTTATAGCTGACGTTTTTTTTTGCCCGCGATAATTTTTGCCGGTTAATA
TTTTTTACCAAATGATTATCGGTTACTTTGAAAATTTTTTTGTTTAAAAA
TTTTTTAATACTTTCTTGTTAAATTATTCCTGCTTAAAGGACAATAATTG
CAATAATTGCTCAGTTTATCTTTGTTTTTCAGCCTTGATTTCTCTATAAG
GCCGATGTTAAGCCAGAAAAAAATTTATCGGCAAAAACTGTTCGTCAGTA
AAAAGTGACGAAATTTGAATGTTTTTTACCTAAGAATTTTCTACTGATAA
GGTACTTGCTTCTTTTTCTTCAAAGTAATAATATTCATTTATCTTTTAAT
CGTCCTAGGATGGCAATAAGAGACTTGGAAGAAGATAAGCATCGTAAGAG
AAGATATGCTTTTTTGAAAGCTTTCCACGTCATCAAAAATCTTCCACCTG
AGAACGAGGACTCTTATTGGAAAATTGCGTCCTTTAATGGTCAGCCTTTT
ACACATCCAAGAACAACTCCTCCAGAATCACTTAAAATGTGGGGCGCTGA
CAGCCAACACCAAAATGTTCTTTTCCTCCCCTGGTACAGAGCTTATCTTT
TACATCTTGAGGAGGCTCTTGTGAGAAATGCCCCTGAAGATGGAGATTTA
GTTGCTTTGCATTACTGGGATGAAACATGGAAAGAGATAATCAAAAAGGG
TGAACCACCTTTGCCAAATCTCTTGGTAAAAGAATTTGTGGAGATTGATG
ACGATGGAACCACGATTTCAAACCCTCTTCTCGGATTCACTCTTCCTAAA
GCAATACCTTTATCCCAAGCAACATCAAAATATGTCAAACCCGCAGGTTA
TACAACATGTCGTTACCCATACTCAGGGCTCAGGAAGCCTGAAAATCCAC
TTCAAGAAACCTTCAACGCCAAAATCCAAAATGATTATGTCAATCATAAT
CTCCCAAAAAGTCCAACTTTTTATTTGCAAGAAAATATCACACATGCGTT
AAAGCATTCCATCCACAAGAGTTATAAGGATTGCTTGGAAGTTGAAAAAT
ATAACAAGTTCTCAAACATCCAGTCAGGTAATCACAGTGTTGAGCTGGCC
AGTATCCAGATGCTTCAAGCGTTAGGTGGGACTGGTGAGTTTTCCTTAAT
TGCTGGTTCCCATGGTGATTTAGGATCAAACGAAATGGCGGCTTTCGATC
CGCTTTTCTTCTTGCATATGTCAAATGTAGATCGCGTTTTTTGGCTTTGG
TATGAGAAATGGGCTCATAACGTAGATATGGGTATGAGTAAGCCAGATAA
AGGGGAGCAACCCAAATATGGTCAAGGACCCAGTCCAAACCAAACTGGGA
ATGAAGTGTTAACCGCAGATACGAATTTGTACCCGTTCAAGAAGGCAGGA
AAATACTTGAATAGGAATGAGCTTATGGATATCAAGGAACTAGGTTACCA
CTATGAGAGAGGTTCTATGACCTTACCTGACCCCCCTCATGATTAAATAA
CAGTCACAATAAGTGCAGTTGATTGTCTCTAATTCGATCTTCATGAGACT
GAAAACTTTCTTCGAATTAGGGAAAGATTGGAATTACTGAGAAGCGGACC
AATCGGACAAATATTTCAGTTCGAATTACTGAAATATTCGAATTAGAGTG
AGTCCAGTGTTATTGTTTTGATCCATTATTTTTAACACAGG Coding sequence (CDS) from alignment at scaffold_343:137303..141193- >TCONS_00060499 ID=TCONS_00060499|Name=TCONS_00060499|organism=Clytia hemisphaerica|type=CDS|length=3600bp|location=Sequence derived from alignment at scaffold_343:137303..141193- (Clytia hemisphaerica)
GATGGCAATAAGAGACTTGGAAGAAGATAAGCATCGTAAGAGAAGATATG
CTTTTTTGAAAGCTTTCCACGTCATCAAAAATCTTCCACCTGAGAACGAG
GACTCTTATTGGAAAATTGCGTCCTTTAATGGTCAGCCTTTTACACATCC
AAGAACAACTCCTCCAGAATCACTTAAAATGTGGGGCGCTGACAGCCAAC
ACCAAAATGTTCTTTTCCTCCCCTGGTACAGAGCTTATCTTTTACATCTT
GAGGAGGCTCTTGTGAGAAATGCCCCTGAAGATGGAGATTTAGTTGCTTT
GCATTACTGGGATGAAACATGGAAAGAGATAATCAAAAAGGGTGAACCAC
CTTTGCCAAATCTCTTGGTAAAAGAATTTGTGGAGATTGATGACGATGGA
ACCACGATTTCAAACCCTCTTCTCGGATTCACTCTTCCTAAAGCAATACC
TTTATCCCAAGCAACATCAAAATATGTCAAACCCGCAGGTTATACAACAT
GTCGTTACCCATACTCAGGGCTCAGGAAGCCTGAAAATCCACTTCAAGAA
ACCTTCAACGCCAAAATCCAAAATGATTATGTCAATCATAATCTCCCAAA
AAGTCCAACTTTTTATTTGCAAGAAAATATCACACATGCGTTAAAGCATT
CCATCCACAAGAGTTATAAGGATTGCTTGGAAGTTGAAAAATATAACAAG
TTCTCAAACATCCAGTCAGGTAATCACAGTGTTGAGCTGGCCAGTATCCA
GATGCTTCAAGCGTTAGGTGGGACTGGTGAGTTTTCCTTAATTGCTGGTT
CCCATGGTGATTTAGGATCAAACGAAATGGCGGCTTTCGATCCGCTTTTC
TTCTTGCATATGTCAAATGTAGATCGCGTTTTTTGGCTTTGGTATGAGAA
ATGGGCTCATAACGTAGATATGGGTATGAGTAAGCCAGATAAAGGGGAGC
AACCCAAATATGGTCAAGGACCCAGTCCAAACCAAACTGGGAATGAAGTG
TTAACCGCAGATACGAATTTGTACCCGTTCAAGAAGGCAGGAAAATACTT
GAATAGGAATGAGCTTATGGATATCAAGGAACTAGGTTACCACTATGAGA
GAGGTTCTATGACCTTACCTGACCCCCCTCATGATTAAAATAATCAGAGC
AAAAGTGATGAAGAGAAAATTATCAGAAAGAGTCTTTTGACACAAAAATG
GATGGCAATAAGAGACTTGGAAGAAGATAAGCATCGTAAGAGAAGATATG
CTTTTTTGAAAGCTTTCCACGTCATCAAAAATCTTCCACCTGAGAACGAG
GACTCTTATTGGAAAATTGCGTCCTTTAATGGTCAGCCTTTTACACATCC
AAGAACAACTCCTCCAGAATCACTTAAAATGTGGGGCGCTGACAGCCAAC
ACCAAAATGTTCTTTTCCTCCCCTGGTACAGAGCTTATCTTTTACATCTT
GAGGAGGCTCTTGTGAGAAATGCCCCTGAAGATGGAGATTTAGTTGCTTT
GCATTACTGGGATGAAACATGGAAAGAGATAATCAAAAAGGGTGAACCAC
CTTTGCCAAATCTCTTGGTAAAAGAATTTGTGGAGATTGATGACGATGGA
ACCACGATTTCAAACCCTCTTCTCGGATTCACTCTTCCTAAAGCAATACC
TTTATCCCAAGCAACATCAAAATATGTCAAACCCGCAGGTTATACAACAT
GTCGTTACCCATACTCAGGGCTCAGGAAGCCTGAAAATCCACTTCAAGAA
ACCTTCAACGCCAAAATCCAAAATGATTATGTCAATCATAATCTCCCAAA
AAGTCCAACTTTTTATTTGCAAGAAAATATCACACATGCGTTAAAGCATT
CCATCCACAAGAGTTATAAGGATTGCTTGGAAGTTGAAAAATATAACAAG
TTCTCAAACATCCAGTCAGGTAATCACAGTGTTGAGCTGGCCAGTATCCA
GATGCTTCAAGCGTTAGGTGGGACTGGTGAGTTTTCCTTAATTGCTGGTT
CCCATGGTGATTTAGGATCAAACGAAATGGCGGCTTTCGATCCGCTTTTC
TTCTTGCATATGTCAAATGTAGATCGCGTTTTTTGGCTTTGGTATGAGAA
ATGGGCTCATAACGTAGATATGGGTATGAGTAAGCCAGATAAAGGGGAGC
AACCCAAATATGGTCAAGGACCCAGTCCAAACCAAACTGGGAATGAAGTG
TTAACCGCAGATACGAATTTGTACCCGTTCAAGAAGGCAGGAAAATACTT
GAATAGGAATGAGCTTATGGATATCAAGGAACTAGGTTACCACTATGAGA
GAGGTTCTATGACCTTACCTGACCCCCCTCATGATTAAAATAATCAGAGC
AAAAGTGATGAAGAGAAAATTATCAGAAAGAGTCTTTTGACACAAAAATG
GATGGCAATAAGAGACTTGGAAGAAGATAAGCATCGTAAGAGAAGATATG
CTTTTTTGAAAGCTTTCCACGTCATCAAAAATCTTCCACCTGAGAACGAG
GACTCTTATTGGAAAATTGCGTCCTTTAATGGTCAGCCTTTTACACATCC
AAGAACAACTCCTCCAGAATCACTTAAAATGTGGGGCGCTGACAGCCAAC
ACCAAAATGTTCTTTTCCTCCCCTGGTACAGAGCTTATCTTTTACATCTT
GAGGAGGCTCTTGTGAGAAATGCCCCTGAAGATGGAGATTTAGTTGCTTT
GCATTACTGGGATGAAACATGGAAAGAGATAATCAAAAAGGGTGAACCAC
CTTTGCCAAATCTCTTGGTAAAAGAATTTGTGGAGATTGATGACGATGGA
ACCACGATTTCAAACCCTCTTCTCGGATTCACTCTTCCTAAAGCAATACC
TTTATCCCAAGCAACATCAAAATATGTCAAACCCGCAGGTTATACAACAT
GTCGTTACCCATACTCAGGGCTCAGGAAGCCTGAAAATCCACTTCAAGAA
ACCTTCAACGCCAAAATCCAAAATGATTATGTCAATCATAATCTCCCAAA
AAGTCCAACTTTTTATTTGCAAGAAAATATCACACATGCGTTAAAGCATT
CCATCCACAAGAGTTATAAGGATTGCTTGGAAGTTGAAAAATATAACAAG
TTCTCAAACATCCAGTCAGGTAATCACAGTGTTGAGCTGGCCAGTATCCA
GATGCTTCAAGCGTTAGGTGGGACTGGTGAGTTTTCCTTAATTGCTGGTT
CCCATGGTGATTTAGGATCAAACGAAATGGCGGCTTTCGATCCGCTTTTC
TTCTTGCATATGTCAAATGTAGATCGCGTTTTTTGGCTTTGGTATGAGAA
ATGGGCTCATAACGTAGATATGGGTATGAGTAAGCCAGATAAAGGGGAGC
AACCCAAATATGGTCAAGGACCCAGTCCAAACCAAACTGGGAATGAAGTG
TTAACCGCAGATACGAATTTGTACCCGTTCAAGAAGGCAGGAAAATACTT
GAATAGGAATGAGCTTATGGATATCAAGGAACTAGGTTACCACTATGAGA
GAGGTTCTATGACCTTACCTGACCCCCCTCATGATTAAAATAATCAGAGC
AAAAGTGATGAAGAGAAAATTATCAGAAAGAGTCTTTTGACACAAAAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060499-exon-scaffold_343-1575043694:141174..141193 | TCONS_00060499-exon-scaffold_343-1575043694:141174..141193 | Clytia hemisphaerica | exon |
| TCONS_00060499-exon-scaffold_343-1575043694:139234..139277 | TCONS_00060499-exon-scaffold_343-1575043694:139234..139277 | Clytia hemisphaerica | exon |
| TCONS_00060499-exon-scaffold_343-1575043694:137303..138635 | TCONS_00060499-exon-scaffold_343-1575043694:137303..138635 | Clytia hemisphaerica | exon |
| TCONS_00060499-exon-scaffold_343-1510915933:141174..141193 | TCONS_00060499-exon-scaffold_343-1510915933:141174..141193 | Clytia hemisphaerica | exon |
| TCONS_00060499-exon-scaffold_343-1510915933:139234..139277 | TCONS_00060499-exon-scaffold_343-1510915933:139234..139277 | Clytia hemisphaerica | exon |
| TCONS_00060499-exon-scaffold_343-1510915933:137303..138635 | TCONS_00060499-exon-scaffold_343-1510915933:137303..138635 | Clytia hemisphaerica | exon |
| TCONS_00060499-exon-scaffold_343-1491911889:141174..141193 | TCONS_00060499-exon-scaffold_343-1491911889:141174..141193 | Clytia hemisphaerica | exon |
| TCONS_00060499-exon-scaffold_343-1491911889:139234..139277 | TCONS_00060499-exon-scaffold_343-1491911889:139234..139277 | Clytia hemisphaerica | exon |
| TCONS_00060499-exon-scaffold_343-1491911889:137303..138635 | TCONS_00060499-exon-scaffold_343-1491911889:137303..138635 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_343 | supercontig | scaffold_343:137303..141193 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002227 | Tyrosinase_Cu-bd |
| IPR008922 | Unchr_di-copper_centre |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0008152 | metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016491 | oxidoreductase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0008152 |
metabolic process |
| molecular_function |
GO:0016491 |
oxidoreductase activity |
Blast
The following BLAST results are available for this feature:
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