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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060494 ID=TCONS_00060494|Name=TCONS_00060494|organism=Clytia hemisphaerica|type=transcript|length=2068bp
CATTAATCAATTCAGTTCAAGATCGAAAGCACTAACAGTCATTAGTAGAA
TAAACGATATCACAAATCGATTTTCTAGGAACGACAAAGTAGCATTTTTA
TTACCTTAGtttaaattcataaaaattatGGTTTGGTCAGCTCCAGATAT
GGATTTACCAAGAGGATTGACAGCATCTCCAGAAATGAACGGATCAAGCT
ATCACACCATGAGCAGTAAGACAGCACCTTCGTTAATCTCGCACTACGAA
GCAGCTTTCTCCACACCATATCGTCCACAAGGATTAAATAACAACAATAC
ACCACCACCCCTTTCATCACCATCTTACCTTCGAAATGATGCTAACAGAT
ACGGTGGCACGGGAACCCCAACAACAGACTCTCTCGAACAATCTGCATTC
AGTCACATCTCATCGCCAGATACGACAGCTAATTCACCACCAATGACAGA
ACCAACTTACAGCACAACAGCAGGAAGCACGTTCGACACCTCCGTGCAAT
CCTACCTTGCCAACACGTCTTTAGCTAACCCACCATCAACCTCAGCAATG
TCATTTTACAACACTCCCACCTCTCTACTATCCAACCAACACTTATCCAC
AGATTACTCACAATTTGGATATGCTTCTCCTTCAAACTATTTCTACAGCT
CTGGTTACCCATCCATCGGATCTGGGTACAATACTTATCCAGGAATGACC
AACACTGGGCCTTTACCAGcTGGTCCATGGATATGCCGAGATATCGATAC
CAAACGAAAACGAATGACTTATTCACGAAAACAACTTTTAGAATTGGAAA
AAGAATTTCATTTCAGTCAATTCTTAAAGAAAGAACGAAGATCAGACTTG
GCAAAACAACTCAGTTTAACCGAACGACAAATCAAAATCTGGTTCCAAAA
TCGCCGTATGAAACATAAGAAAGAAtgtaacaaaaagaaaacaggtgccg
ttcaacaacaacaacatcaacaacaacctcaacatcaacaacaacaaaaa
gacaTTATTCCAACTGCTAATATTaaagaagaaattaaagaaGAACATCA
ACATCATCTTTTACCACACCATAATCCCCACCATAATAAAATCCAACAAA
TTAATTTGAACAATCTTCCAGTGTTACCTAACATGGCACATGTATGAAAA
TAGGATTTCATTGGTTAAGATGAATAAGACAGAGAATGTGTTTTGGAGAT
ACAAGGTGGATTGATGAACTCAGAAAGTTACGAGGACCAAGACACAAAAT
ACAATGTAAGAACCTTAGAGAGGACAANGGAAAGTTATGAGGACCGACAC
GAAATACAATGTAAGAACCTTAGAGAGGACATACTACAAAGACGCAAAAT
GATTATTCGCGATATTCTTTATGACTTCCAAATGAGGATGAGTTTTAGAA
GTTTCTGGGAGTAGTTAATCTCTTACTTTAACGGAGGGTTCGTTTCTGCt
aatgaaattcttttttatttgattttttacacaCATATCCTTGAACTTGT
CAAAGGTAATGAGTGAAAAGATCACGTCCTAACTCGCTTCATTTGGCGAA
TAGAAGGGCGGAAATTTTTATCATGCCAATATCAGTAGAAACGGACCCTC
GTGaacacaaaagaatttttttcctaTTTAAGGCTGGACCTACAATATCA
CATccaaattctttttttgttttattcagTTCAGAGTAAAAAtgttactg
tttaaaaatccttagtttgtatttttttgatattttgaaNTGTTTTATTC
AGTTCAGATTAAAAAAATGTTACtgtatttttttgatattttgaatcttt
tttttattttgaaagaatatttttagttttagttttgcAATATGTAAATA
CTTTTTAGCGCGCATGCGTAGAATCATACAAACCATAcagaaaaagaata
tttttttaaatctttttgaaaagatttcccAATAAACCTAACTGGTTTTC
GGGTGACTTGGGAATCTTTTTTTTGTACATAGGGAAAATAGAGATATATC
AAATATTGGatgaaaatattattattacctttttttaaatgaagaaaaaa
aatacaggAAAGTTAAAA Run BLAST on NCBI protein sequence of Hox9-14C homeodomain transcription factor protein >TCONS_00060494-protein ID=TCONS_00060494-protein|Name=Hox9-14C homeodomain transcription factor protein|organism=Clytia hemisphaerica|type=polypeptide|length=339bp
MVWSAPDMDLPRGLTASPEMNGSSYHTMSSKTAPSLISHYEAAFSTPYRP
QGLNNNNTPPPLSSPSYLRNDANRYGGTGTPTTDSLEQSAFSHISSPDTT
ANSPPMTEPTYSTTAGSTFDTSVQSYLANTSLANPPSTSAMSFYNTPTSL
LSNQHLSTDYSQFGYASPSNYFYSSGYPSIGSGYNTYPGMTNTGPLPAGP
WICRDIDTKRKRMTYSRKQLLELEKEFHFSQFLKKERRSDLAKQLSLTER
QIKIWFQNRRMKHKKECNKKKTGAVQQQQHQQQPQHQQQQKDIIPTANIK
EEIKEEHQHHLLPHHNPHHNKIQQINLNNLPVLPNMAHV Run BLAST on NCBI transcript from alignment at scaffold_343:226404..228683+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060494 ID=TCONS_00060494|Name=TCONS_00060494|organism=Clytia hemisphaerica|type=transcript|length=2280bp|location=Sequence derived from alignment at scaffold_343:226404..228683+ (Clytia hemisphaerica)
CATTAATCAATTCAGTTCAAGATCGAAAGCACTAACAGTCATTAGTAGAA
TAAACGATATCACAAATCGATTTTCTAGGAACGACAAAGTAGCATTTTTA
TTACCTTAGtttaaattcataaaaattatGGTTTGGTCAGCTCCAGATAT
GGATTTACCAAGAGGATTGACAGCATCTCCAGAAATGAACGGATCAAGCT
ATCACACCATGAGCAGTAAGACAGCACCTTCGTTAATCTCGCACTACGAA
GCAGCTTTCTCCACACCATATCGTCCACAAGGATTAAATAACAACAATAC
ACCACCACCCCTTTCATCACCATCTTACCTTCGAAATGATGCTAACAGAT
ACGGTGGCACGGGAACCCCAACAACAGACTCTCTCGAACAATCTGCATTC
AGTCACATCTCATCGCCAGATACGACAGCTAATTCACCACCAATGACAGA
ACCAACTTACAGCACAACAGCAGGAAGCACGTTCGACACCTCCGTGCAAT
CCTACCTTGCCAACACGTCTTTAGCTAACCCACCATCAACCTCAGCAATG
TCATTTTACAACACTCCCACCTCTCTACTATCCAACCAACACTTATCCAC
AGATTACTCACAATTTGGATATGCTTCTCCTTCAAACTATTTCTACAGCT
CTGGTTACCCATCCATCGGATCTGGGTACAATACTTATCCAGGAATGACC
AACACTGGGCCTTTACCAGGTAAGCCTCACTAGTTAGCTTCATTGTACCA
CATTTTATCAAACTTTCACAAGTCTTGCATAAAAACTCTCTCCTGTAATC
ATAATCCGAAAAACCACAACCAAGGCTTTTTAGactctaaaaataatttt
tatccaGTTCTATCCCTACttcagtatttttgtttttagtttCGAAATCT
TAATGATGTgaatttttcttctatttttcagcTGGTCCATGGATATGCCG
AGATATCGATACCAAACGAAAACGAATGACTTATTCACGAAAACAACTTT
TAGAATTGGAAAAAGAATTTCATTTCAGTCAATTCTTAAAGAAAGAACGA
AGATCAGACTTGGCAAAACAACTCAGTTTAACCGAACGACAAATCAAAAT
CTGGTTCCAAAATCGCCGTATGAAACATAAGAAAGAAtgtaacaaaaaga
aaacaggtgccgttcaacaacaacaacatcaacaacaacctcaacatcaa
caacaacaaaaagacaTTATTCCAACTGCTAATATTaaagaagaaattaa
agaaGAACATCAACATCATCTTTTACCACACCATAATCCCCACCATAATA
AAATCCAACAAATTAATTTGAACAATCTTCCAGTGTTACCTAACATGGCA
CATGTATGAAAATAGGATTTCATTGGTTAAGATGAATAAGACAGAGAATG
TGTTTTGGAGATACAAGGTGGATTGATGAACTCAGAAAGTTACGAGGACC
AAGACACAAAATACAATGTAAGAACCTTAGAGAGGACAANGGAAAGTTAT
GAGGACCGACACGAAATACAATGTAAGAACCTTAGAGAGGACATACTACA
AAGACGCAAAATGATTATTCGCGATATTCTTTATGACTTCCAAATGAGGA
TGAGTTTTAGAAGTTTCTGGGAGTAGTTAATCTCTTACTTTAACGGAGGG
TTCGTTTCTGCtaatgaaattcttttttatttgattttttacacaCATAT
CCTTGAACTTGTCAAAGGTAATGAGTGAAAAGATCACGTCCTAACTCGCT
TCATTTGGCGAATAGAAGGGCGGAAATTTTTATCATGCCAATATCAGTAG
AAACGGACCCTCGTGaacacaaaagaatttttttcctaTTTAAGGCTGGA
CCTACAATATCACATccaaattctttttttgttttattcagTTCAGAGTA
AAAAtgttactgtttaaaaatccttagtttgtatttttttgatattttga
aNTGTTTTATTCAGTTCAGATTAAAAAAATGTTACtgtatttttttgata
ttttgaatcttttttttattttgaaagaatatttttagttttagttttgc
AATATGTAAATACTTTTTAGCGCGCATGCGTAGAATCATACAAACCATAc
agaaaaagaatatttttttaaatctttttgaaaagatttcccAATAAACC
TAACTGGTTTTCGGGTGACTTGGGAATCTTTTTTTTGTACATAGGGAAAA
TAGAGATATATCAAATATTGGatgaaaatattattattacctttttttaa
atgaagaaaaaaaatacaggAAAGTTAAAA Coding sequence (CDS) from alignment at scaffold_343:226404..228683+ >TCONS_00060494 ID=TCONS_00060494|Name=TCONS_00060494|organism=Clytia hemisphaerica|type=CDS|length=2040bp|location=Sequence derived from alignment at scaffold_343:226404..228683+ (Clytia hemisphaerica)
atGGTTTGGTCAGCTCCAGATATGGATTTACCAAGAGGATTGACAGCATC
TCCAGAAATGAACGGATCAAGCTATCACACCATGAGCAGTAAGACAGCAC
CTTCGTTAATCTCGCACTACGAAGCAGCTTTCTCCACACCATATCGTCCA
CAAGGATTAAATAACAACAATACACCACCACCCCTTTCATCACCATCTTA
CCTTCGAAATGATGCTAACAGATACGGTGGCACGGGAACCCCAACAACAG
ACTCTCTCGAACAATCTGCATTCAGTCACATCTCATCGCCAGATACGACA
GCTAATTCACCACCAATGACAGAACCAACTTACAGCACAACAGCAGGAAG
CACGTTCGACACCTCCGTGCAATCCTACCTTGCCAACACGTCTTTAGCTA
ACCCACCATCAACCTCAGCAATGTCATTTTACAACACTCCCACCTCTCTA
CTATCCAACCAACACTTATCCACAGATTACTCACAATTTGGATATGCTTC
TCCTTCAAACTATTTCTACAGCTCTGGTTACCCATCCATCGGATCTGGGT
ACAATACTTATCCAGGAATGACCAACACTGGGCCTTTACCAGcTGGTCCA
TGGATATGCCGAGATATCGATACCAAACGAAAACGAATGACTTATTCACG
AAAACAACTTTTAGAATTGGAAAAAGAATTTCATTTCAGTCAATTCTTAA
AGAAAGAACGAAGATCAGACTTGGCAAAACAACTCAGTTTAACCGAACGA
CAAATCAAAATCTGGTTCCAAAATCGCCGTATGAAACATAAGAAAGAAtg
taacaaaaagaaaacaggtgccgttcaacaacaacaacatcaacaacaac
ctcaacatcaacaacaacaaaaagacaTTATTCCAACTGCTAATATTaaa
gaagaaattaaagaaGAACATCAACATCATCTTTTACCACACCATAATCC
CCACCATAATAAAATCCAACAAATTAATTTGAACAATCTTCCAGTGTTAC
CTAACATGGCACATGTATGAatGGTTTGGTCAGCTCCAGATATGGATTTA
CCAAGAGGATTGACAGCATCTCCAGAAATGAACGGATCAAGCTATCACAC
CATGAGCAGTAAGACAGCACCTTCGTTAATCTCGCACTACGAAGCAGCTT
TCTCCACACCATATCGTCCACAAGGATTAAATAACAACAATACACCACCA
CCCCTTTCATCACCATCTTACCTTCGAAATGATGCTAACAGATACGGTGG
CACGGGAACCCCAACAACAGACTCTCTCGAACAATCTGCATTCAGTCACA
TCTCATCGCCAGATACGACAGCTAATTCACCACCAATGACAGAACCAACT
TACAGCACAACAGCAGGAAGCACGTTCGACACCTCCGTGCAATCCTACCT
TGCCAACACGTCTTTAGCTAACCCACCATCAACCTCAGCAATGTCATTTT
ACAACACTCCCACCTCTCTACTATCCAACCAACACTTATCCACAGATTAC
TCACAATTTGGATATGCTTCTCCTTCAAACTATTTCTACAGCTCTGGTTA
CCCATCCATCGGATCTGGGTACAATACTTATCCAGGAATGACCAACACTG
GGCCTTTACCAGcTGGTCCATGGATATGCCGAGATATCGATACCAAACGA
AAACGAATGACTTATTCACGAAAACAACTTTTAGAATTGGAAAAAGAATT
TCATTTCAGTCAATTCTTAAAGAAAGAACGAAGATCAGACTTGGCAAAAC
AACTCAGTTTAACCGAACGACAAATCAAAATCTGGTTCCAAAATCGCCGT
ATGAAACATAAGAAAGAAtgtaacaaaaagaaaacaggtgccgttcaaca
acaacaacatcaacaacaacctcaacatcaacaacaacaaaaagacaTTA
TTCCAACTGCTAATATTaaagaagaaattaaagaaGAACATCAACATCAT
CTTTTACCACACCATAATCCCCACCATAATAAAATCCAACAAATTAATTT
GAACAATCTTCCAGTGTTACCTAACATGGCACATGTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060494-exon-scaffold_343-1491911889:226404..227122 | TCONS_00060494-exon-scaffold_343-1491911889:226404..227122 | Clytia hemisphaerica | exon |
| TCONS_00060494-exon-scaffold_343-1510915933:226404..227122 | TCONS_00060494-exon-scaffold_343-1510915933:226404..227122 | Clytia hemisphaerica | exon |
| TCONS_00060494-exon-scaffold_343-1575043694:226404..227122 | TCONS_00060494-exon-scaffold_343-1575043694:226404..227122 | Clytia hemisphaerica | exon |
| TCONS_00060494-exon-scaffold_343-1491911889:227335..228683 | TCONS_00060494-exon-scaffold_343-1491911889:227335..228683 | Clytia hemisphaerica | exon |
| TCONS_00060494-exon-scaffold_343-1510915933:227335..228683 | TCONS_00060494-exon-scaffold_343-1510915933:227335..228683 | Clytia hemisphaerica | exon |
| TCONS_00060494-exon-scaffold_343-1575043694:227335..228683 | TCONS_00060494-exon-scaffold_343-1575043694:227335..228683 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_343 | supercontig | scaffold_343:226404..228683 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0043565 | sequence-specific DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
Blast
BLAST of TCONS_00060494 vs. Swiss-Prot (Human)
Match: HXA7 (Homeobox protein Hox-A7 OS=Homo sapiens GN=HOXA7 PE=1 SV=3) HSP 1 Score: 95.1301 bits (235), Expect = 1.528e-21 Identity = 46/81 (56.79%), Postives = 55/81 (67.90%), Query Frame = 2
Query: 683 TYPGMTNTGPLPAGPWICRDIDTKRKRMTYSRKQLLELEKEFHFSQFLKKERRSDLAKQLSLTERQIKIWFQNRRMKHKKE 925
YP M ++GP D KR R TY+R Q LELEKEFHF+++L + RR ++A L LTERQIKIWFQNRRMK KKE
Sbjct: 119 IYPWMRSSGP-----------DRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 188
The following BLAST results are available for this feature:
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