Hox9-14C homeodomain transcription factor protein (polypeptide) - C. hemisphaerica

Overview
NameHox9-14C homeodomain transcription factor protein
Unique NameTCONS_00060494-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length339

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060494-protein ID=TCONS_00060494-protein|Name=Hox9-14C homeodomain transcription factor protein|organism=Clytia hemisphaerica|type=polypeptide|length=339bp
MVWSAPDMDLPRGLTASPEMNGSSYHTMSSKTAPSLISHYEAAFSTPYRP
QGLNNNNTPPPLSSPSYLRNDANRYGGTGTPTTDSLEQSAFSHISSPDTT
ANSPPMTEPTYSTTAGSTFDTSVQSYLANTSLANPPSTSAMSFYNTPTSL
LSNQHLSTDYSQFGYASPSNYFYSSGYPSIGSGYNTYPGMTNTGPLPAGP
WICRDIDTKRKRMTYSRKQLLELEKEFHFSQFLKKERRSDLAKQLSLTER
QIKIWFQNRRMKHKKECNKKKTGAVQQQQHQQQPQHQQQQKDIIPTANIK
EEIKEEHQHHLLPHHNPHHNKIQQINLNNLPVLPNMAHV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038055XLOC_038055Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060494TCONS_00060494Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000047HTH_motif
IPR020479Homeobox_metazoa
IPR001356Homeobox_dom
IPR017970Homeobox_CS
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000047Helix-turn-helix motifPRINTSPR00031HTHREPRESSRcoord: 246..262
score: 58.71
coord: 237..246
score: 40.19
IPR020479Homeobox domain, metazoaPRINTSPR00024HOMEOBOXcoord: 245..255
score: 66.0
coord: 255..264
score: 80.31
coord: 230..241
score: 24.64
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 208..270
e-value: 7.6E-23
score: 91.9
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 209..265
e-value: 7.6E-19
score: 67.2
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 206..266
score: 20.973
NoneNo IPR availableGENE3D1.10.10.60coord: 185..271
e-value: 1.5E-22
score: 78.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..113
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 263..291
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availableCDDcd00086homeodomaincoord: 209..261
e-value: 1.70846E-21
score: 84.9876
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 241..264
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 189..265

Blast
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BLAST of Hox9-14C homeodomain transcription factor protein vs. Swiss-Prot (Human)
Match: HXA7 (Homeobox protein Hox-A7 OS=Homo sapiens GN=HOXA7 PE=1 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 3.138e-23
Identity = 46/83 (55.42%), Postives = 56/83 (67.47%), Query Frame = 0 
Query:  184 YNTYPGMTNTGPLPAGPWICRDIDTKRKRMTYSRKQLLELEKEFHFSQFLKKERRSDLAKQLSLTERQIKIWFQNRRMKHKKE 266
            +  YP M ++GP           D KR R TY+R Q LELEKEFHF+++L + RR ++A  L LTERQIKIWFQNRRMK KKE
Sbjct:  117 FRIYPWMRSSGP-----------DRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 188
The following BLAST results are available for this feature:
BLAST of Hox9-14C homeodomain transcription factor protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HXA73.138e-2355.42Homeobox protein Hox-A7 OS=Homo sapiens GN=HOXA7 P... [more]
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