TCONS_00060489 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060489
Unique NameTCONS_00060489
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1750

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060489 ID=TCONS_00060489|Name=TCONS_00060489|organism=Clytia hemisphaerica|type=transcript|length=1750bp
aataatcaatttttaaaaatggcagccaaatcttgttttgaaaagaagCC
GGTGTTTTCGCAAAGTTGTTAAATATTGTGACTTTTTggtgtttcaaaga
aaattacGAAAGTTTAGCTTCAAATATCTTCGCAATCTTAAGGCTTAAGA
CTTTCTtagccttataaaaggttgaacAAAGGTTCGAAGCTGCTTACTAC
CGTTATATTTCTAGTGTTTCGTTTTTCTTTGGttccaaaattctcaattt
ttgttAACAATGGCTTGTGCTGCTCTCAAGAGACCTCACAACTTTGATCT
TCTTGGTAACAGTCCTGATCATAAAGTCAGTGCATCTCCTAAAAGGAGAA
GATGTGGAGCTGTAGTTACATCTTGTTCGTCAACAAGTATTTCTCCTTTC
CTTGAAGCTACTCCAAAATTATGcaaagATGAGTTGGCCAAAAATGTACA
AGATGAATGGAGAAGGATACAACGCCGTAGGAGATTGGCTTGtccctcat
cacctcaaaacAATACATCCAACCTTCAGAGTCTTTTTGGATCCCCAACT
TCCTTCAACACAGGATATTGGTCACCTCCTAGAGGTTCAATGTCACCATG
TAGTAGTTCCATGTCTCCCCCCAGAACCACCACTGAGCGTTCAGAACAGA
CCAGTTTGAATGTCAAACAAGTCGTTTCGCTCTGTGAAAGATTGTGGAAA
GAACGCGAGGATAAACTTCGTGAAGAATATGACAAAGTTCTCAATGATAG
ACTGTCAGAACAGTACGACTCCTTTTTGAAGTTCACTCAAGATCAAATAA
TGaggaaatatcaaaattcatcATGTAGTTACGTTTCGTAACGTGCTTTG
TCATCTGGACGAATGAATTGTAAATATGTCATTTAAAAATTTGTATTTCC
CTCATTATTATTAGTTTGAATAAGACATTGTTTCAAAGAACCTTATTAAT
TTTGGTATTTAGTACTTTAGAAAGCACTTTCATGTCTCAGAAAAGATCTG
AAAGGAActaaatttgagatttttgctcAGAATGAGGTGATGAGactgta
aaaaaactttcttgacatttttcaaatttgaagcCATTACTTAATGTCAA
AATGGTGCTAGgaatttattttgattgttcaTAGCAATTTTACTAcagta
ttttatttttgttccaattATTTCTATTATATTCAGTTGCTGTGGGAGAT
TGAGCCTCTCTCCAAGCAAATTGGAGTTCCAGATGGAATTATTGACTTTC
TGTATCATTTAGTTCCACTAATTTGTATCATAGTTTATGTTAggagattt
tatttttgttccatttttcttcttttacttAAAAGCATATAGGTTAAATT
TTGAACCACTTTTGATATGGTGAATTTTacttcaagaattttggaatgTA
TTCTTTTCTGGGACAATTTCATTATATGTATACTTTCTATAAACTGCCTA
ACTAAAGACTCTTAAGGTTTTTTCGAAAAGATATTGAAGAAAAGAATTGC
ATCTTTCTGTTGCTATTACCATAGTCGAAGCTTCCAAATTAGCAGTCTTC
GAGACGGAATGATTTCTTACTCAATTgtagtatatatttttgaatgcttg
ataaattttagatttttagtgAGTTTAGTATATCCATcagttttattatt
atttcaatTACTATTACTGGAAATATGGCGTTCTACTGAATTTTAATATT
GTATTATATTATTTGTTcacaaaataaactttttttgagtATAAAAAACT
Run BLAST on NCBI

protein sequence of TCONS_00060489-protein

>TCONS_00060489-protein ID=TCONS_00060489-protein|Name=TCONS_00060489-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
MACAALKRPHNFDLLGNSPDHKVSASPKRRRCGAVVTSCSSTSISPFLEA
TPKLCKDELAKNVQDEWRRIQRRRRLACPSSPQNNTSNLQSLFGSPTSFN
TGYWSPPRGSMSPCSSSMSPPRTTTERSEQTSLNVKQVVSLCERLWKERE
DKLREEYDKVLNDRLSEQYDSFLKFTQDQIMRKYQNSSCSYVS
Run BLAST on NCBI

transcript from alignment at scaffold_343:90534..108035+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060489 ID=TCONS_00060489|Name=TCONS_00060489|organism=Clytia hemisphaerica|type=transcript|length=17502bp|location=Sequence derived from alignment at scaffold_343:90534..108035+ (Clytia hemisphaerica)
aataatcaatttttaaaaatggcagccaaatcttgttttgaaaagaagCC
GGTGTTTTCGCAAAGTTGTTAAATATTGTGACTTTTTggtgtttcaaaga
aaattacGAAAGTTTAGCTTCAAATATCTTCGCAATCTTAAGGCTTAAGA
CTTTCTtagccttataaaaggttgaacAAAGGTTCGAAGCTGCTTACTAC
CGTTATATTTCTAGTGTTTCGTTTTTCTTTGGttccaaaattctcaattt
ttgttAACAATGGCTTGTGCTGCTCTCAAGAGACCTCACAACTTTGATCT
TCTTGGTAACAGTCCTGATCATAAAGTCAGTGCATCTCCTAAAAGGAGAA
GATGTGGAGCTGTAGTTACATCTTGTTCGTCAACAAGTATTTCTCCTTTC
CTTGAAGCTACTCCAAAATTATGcaaaggtaatttttttgcattgcttgg
aaatttgattgaaagaaaatttatatGAATCATACTGTAATACTATTCTG
ATTTAAAACAGTTGAATATCAAGATGATTGAGTTTTCTCTGTTGAAAATA
ATTGCTTTGATTTTTATTTGGAGCCATCTTCTTTAATAAGATATGTAATG
CGCGAGCAGCAGTAGCAGAGCAGTGCGTGTCCTCTattaggaccctgccg
acgcaccggacttaacgaacaccggacacgcaaaAATCCGgtgtaaaaga
gaattttttttaccaccggacataAGGAAGTcagatgtccggtgtcggag
aaggatattttttcccaccggacaatcaaatgacaccggacttattacgt
ccggtgtagcgaaaggatactttcttccaccggacaaatacaccggacag
tccggtgcgtcggcagggtcctcctCTATTCTGACGACAGGTTGGGTCAG
GCCCAGTTGAtagtttggttcgtgtcctccGGTCAACTCTaagtatttga
gaaaaaatggttatcgattcaaagaaaaaatgtaattaGGTGATGgatag
aaaaagatttttcatagaCTAAGTTAAAATTCACGCTTGTGACAAGCACC
CCCCCCCTACGCAAAAGCGAACGTACACAGATCGACTTGNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCTGGCGTAACGGATTCGTACTCtt
atatactacctggggttttgtagaggtctgcgattcagactacatgGTGG
GGGAATATGCTCCAACCTATAAAGTCGCCCGGGCGTACGCCCGAGCGCCC
TATTTTGCACTTATATACTTTTTACGTCATTGTTTGTTTACGTCACTAAC
TCCAACCAAATTGGAAACAGCTGATTGGCTACtgaaaaaataatcaattt
ttaaaaatggcagccaaatcttgttttgaaaagaagCCGGTGTTTTCGCA
AAGTTGTTAAATATTGTGACTTTTTggtgtttcaaagaaaattacGAAAG
TTTAGCTTCAAATATCTTCGCAATCTTAAGGCTTAAGACTTTCTtagcct
tataaaaggttgaacAAAGGTTCGAAGCTGCTTACTACCGTTATATTTCT
AGTGTTTCGTTTTTCTTTGGttccaaaattctcaatttttgttAACAATG
GCTTGTGCTGCTCTCAAGAGACCTCACAACTTTGATCTTCTTGGTAACAG
TCCTGATCATAAAGTCAGTGCATCTCCTAAAAGGAGAAGATGTGGAGCTG
TAGTTACATCTTGTTCGTCAACAAGTATTTCTCCTTTCCTTGAAGCTACT
CCAAAATTATGcaaaggtaatttttttgcattgcttggaaatttgattga
aagaaaatttatatGAATCATACTGTAATACTATTCTGATTTAAAACAGT
TGAATATCAAGATGATTGAGTTTTCTCTGTTGAAAATAATTGCTTTGATT
TTTATTTGGAGCCATCTTCTTTAATAAGATATGTAATGCGCGAGCAGCAG
TAGCAGAGCAGTGCGTGTCCTCTattaggaccctgccgacgcaccggact
taacgaacaccggacacgcaaaAATCCGgtgtaaaagagaatttttttta
ccaccggacataAGGAAGTcagatgtccggtgtcggagaaggatattttt
tcccaccggacaatcaaatgacaccggacttattacgtccggtgtagcga
aaggatactttcttccaccggacaaatacaccggacagtccggtgcgtcg
gcagggtcctcctCTATTCTGACGACAGGTTGGGTCAGGCCCAGTTGAta
gtttggttcgtgtcctccGGTCAACTCTaagtatttgagaaaaaatggtt
atcgattcaaagaaaaaatgtaattaGGTGATGgatagaaaaagattttt
catagaCTAAGTTAAAATTCACGCTTGTGACAAGCACCCCCCCCCTACGC
AAAAGCGAACGTACACAGATCGACTTgaccccccctccccccgttCGTTT
TCGTTCGCTTTTTGCTGACCCCTCTCCCCCCTCGGcgacgaacgtacttt
ttgaatggcccctaACCTATACTTTAAAAACCAATATTTTACCCCAGTTT
AccatgaagtcgggtaactttcATCattggagggaaacttgcatagccct
ccAAATGAATAACCTGGCTGggcattaaaatacaaagttaaatccaaaca
aacctgatttacaaaaaaattgcgGGTGGTAAAATGTATAAATATCTCTA
GCCTGgttatccaagctcaaaattttagaaaaaacaaaacttatCCCAGC
ATAccaagttctaaaattatagataATGATATCATGGTAATGTACGTTAG
CATATTATGTGATTACTTAATAGAactagagcttggtctccctaagacca
gacccgatcaatcgaacttgtcgaaccaatcgaacaatcgaactaataga
actccatcgaacgattaaagttcgattaaaaaaattaatcgaacctaatc
gaacactcaaaatttttgaagcaatagcagttcgattagttcggtcagta
aaaagttcgattagttcgatgatattaaaatcctcatatcttccctctct
tgcaaaaactttgtcctNgcaaaaactttgtcctggcacgcgattgccaa
tttcgacagttcccggacttaacagcttgatgtttattgtacccggatat
ttgtctatccggaaaaaaagtctgttgcgatttcgcgcgAGGCCGAATGG
CAGAATACTACGCCCGCCCCAACAAACCGCTTcttctggcgctaaaagga
tacaggaaaagtgtgtaatccgttatcggaagtaatttcccgatttacat
tccgaatttggctttgaaaagaagctaatatacggtggcggagcagcaca
aacttgtcaaacaaaattggtttaacgaactgatcgaaccgaaacccaat
gatcgaacttaatcgaacactcacaatcttttaaaaaagcttagagttcg
attaatttatttaatcgaactttaatcgttcatggagttcgattagttcc
attgttcgattggttcgacaagttcgattgatcgggtctggctaagagaa
tgaaagtgcaaacccaaaACTTttctagccaacccagggcaccaaaacag
aaattaattaAAAGGAGCCTTTAAAgatctaaagctattttaaaacatct
aaaagattacaccaaagtccatcaACACACGCAAACGTGTCACCATGAca
aaccatgttttcttggaaaataaaCTCGCCCccacttcttctttttcatg
ttttcatgtaacagaaagctgtaTGTTCACGATGCcagtcaaaaattgtg
tgaagtatcaaaaaatcaacaaaaacacatTTTTCTCAATATATaactct
aaaaatattttcaatatgaATGCAAAACTTTACCAATACATAGTAAATAT
ATACAACAAGAAATAGGCtaagtaagttttttttgaaaaaagtacgtTTT
TGGTGGCTGAAAGTGGAAAAATATACAAGTACCATTAAACATCAGCCACC
ACAGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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attaaaacaaaaatcctTGAGGGGAAGTGTCAATCTAAATTGCAGATAAA
AAATGTACATTAAAATTTAAGGGTAAATGGTCCATTTTGGCGGctgaaaa
aaaggattttttatttcgttctttttatGAAAGTGTCTATCAGCCACCTA
AGGATTGCCTAGCTTCTCTTTGCTCCCCCCTCTCACCAAAAATAAGAGta
tagaaagaagaaaattggcTTTGTTTTGTGTCTTGACTTGTGGCACTATG
ATATGATTCACATGGAAAGTGAATACTCCTTCGCCCATCGGAGCAAACTC
CTTCACCCTGTGGCGAAAATTAAAGGGCTCGAAAATAAAAGGCGCGCAGA
AATTAAGGGCATTAAGGTATCTCTTAATCTTAAGTGATGTCATGCCTAAT
AATGTTTAATACAGAGCTGCAAATAAGCGTCCGTCATCGGTCAACGGTTT
AACCAATCTCTGAAAAGAGGAATAAACTTGGTTGggatttaaaaataaat
ctattACACCCCTGTATTTTGCTTACATAGCCTATTCTTTTAACACTTGC
TTccttcagttagtcacactagcgtctcGCCGAATTgcttatcaaagatt
aatgctgcggaAGCGCTTTATCAATTACTTGGACTCAATCAAGAAAAATG
Tgccgcaaaatttctaaagggatttatgaaaaaataaaccggtacttttt
aataaaattaacaCTAGATAAAACTATGAAGAATTACCTAAATTTtaagc
catagatgaaaaaatttgaaccaagccaaccttaaaaactaatttgaaga
acgacttcccaagaaaaagatctacggatGAGAAGACAACCACCTAGATC
TGCGCACCGCCAGATAGGCTATTACCTGGAAATTTTGCCAGAGCTCATAt
gctgacccatttacatgtgtggAATTATTCTTAATTTAGTGTGTAATCAA
GGCCTTACAATCAAGGTTTTATCTCGGGAATTGcataacaaattttggtt
ggtcattattttttgtttcaagCTTTCGATATTTTACTTTAATTGCCTTG
GGATCTtcaacttgattcaggtaactctcaccCTTGTTGTTTCAAATACA
TCATCATCCTGTAGATGGCTGATGTTGTAATTTCTGAAaccttgatttcc
tagtgtgactaactgtcctTCGTAGcttttaaggtatgtgttcacctttc
ttgacacattctctttaattgatcatatctttagaacaacaaatttttat
atatcaaaagtatcttgggattttttttggaattgactttaactctttaa
atcctaaattctgtaaaaatatcgataaaaaagtaaatttaaatgtgatt
ttttcagttatctgtaaattgaggaaaaacaacttggttagaaataaaat
cctaagacactttttaagtttgatcttttgggaatgtcataaaaaagaat
gaagtcgatatctaaatactatgggtgactttaacttcgttaaaagtagt
atggtgtggtaaaatttcatttttttctacaccaatttgaaatttttaac
gagatgattgctgtttatttgagtaatcagtgaaatttgtcaaaaatatt
actattcaatagaggtgagaacaaacatcagctgaattctctcttttgtc
ttttttgttgtttccgaaagagacaattatttgattaaataatccatcat
aagacgaactttgttttgaaatttaaatggttaaaactctggatcaaaaa
aagattttaagatcgcgattttaccaaaatgaaatccagtaaattttctt
ccactttgactgaaaaaaatttttttgacaaaaaattggaaaaaaggtgt
acacataccttaatagTGTTTCTAAAGTTTACTTTACTTTGTTCTGGGTA
ATTTTATTGACGGTTGTTTCTAAGattacttttttattgactGGTTTATT
CCGTAgctttcaagagtgtttttaagttaacttttatcaacttgctttct
tcgtaactttcaagagtgtttctaaaatcacttttatcaacttgctttct
tcgtaactttcaagagtgtttctaggttaacttttatcaactcgctttct
ccgtaactttcaagactgtctaattttagaaaaatatacactgaatgGCC
CAACAGGGGGCCAGTTTGAgcgacaggatttcatttctgtcggacatgat
gtctgattgactaaaaatatttatttgcaggcCTGTAATATCGTTATTAA
ATTAGAGGTTACACATCCAGCAGCCTAGTTTAGGTATAAACTTATTTCTT
TTTttatgatttttgttggcgaaaacgTTTAGAACATCCCACCGTTCTGC
TCGCTATAATATAGCGAGTTGAACCTGATTGGTCGAAAAAAGCTGTCAAA
TATTTGTAATAATTATCGGAGCAGCGAACTCACTCACTAAACAATTATGC
GCAATTATCTCATTTAGCCGCGGCTTTTTTATCTTAGTAAGAGTAACCAC
ggtaaaacatatcaaaatcaaaacattcaaatcaaATCTTTTACTCAATA
AGTAGACCTTTCTCAAAGCTATTCACAATTGACTGTGTTATTTAAAGCTT
TTGCAATCCTTGTTGCAattcttttcattcaaatttcctCGTAATGATCT
TAAAaacttaagagccattttttttaaaaatcttcagaataaagaaagtg
tgatacctcaccctctcagattttgatgaaattttgaccaaatgatccat
cacacaagaaaataagaccatgaaaatttcaccttgatatctcaagtagt
tttgaagatacaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNttttcttgtgtgatggatcatttggtcaaaatttcatcaaaatc
caagaggatgaggtatcacaccctgaagactcttaaaaaaaatggctctt
aaataTCCACTAAAATGCTCCATATAAAAATCATAAGTTATGTTTCGACC
GATGAGTCCACCGCACGGGTATTGATGAAACGGCCCCATGTAAGTCGATA
TGCATCATTTTTATAACCTAGCTTAATTTGGTAGAAAAGCTTGATCAATT
CATGAGAGTAATTGGTATGACCAGTTGCTTTGAAATAAAGAACTATGATA
TCATTAATATTTCGCAAAATCACGTTGATTGAGAACAAAACCACCTTTCA
AGCTCTCTTCTTTGATCATTGCAAACCTTTCAGTTTGTGATTCAGTTTAG
TTGGTATAAAAGGTCTGCCAGACGCTTCACCGGAGAGTCTTTAAATTGTG
AGCTccctttattttttaaaaggaTACTGTAGAAAGAGAACGGAGAGTGT
ATTCTCCTCTCGCTGAGCTAATAGTTTGTTTGCTCTTTCCATTGTTGGCC
AATTACCTTACGAATGCTTTATGTAAATCTAATAGCGAGAGATTGATCTC
TCGCGTTCTCtttctcttcaaaaacatgtaaaaaaccTAACAAATCGACA
CCCTGGACACTCACACTGCTACTCTGGATTCTAAGAGAttctacgttctg
taaaatgcaaagaaaaataaaaacataacagtAAAGATTGCGGCCAAAGT
AGCGGTATAAACTTTCAGATTAAAAGCATTGCTGTAGGGCTGTATTTTTA
GGAAGAAAACAgctctaaaacgcttaaaattgagcttttttatcGCGGTT
TTTTGTCgaaccgccatctttgtttatgcAAAAGGCGCCATTTTTAAAGC
GACATTTTACGAATAATTAATACGGTTAATAAACAATAGAGAAGTTTCTG
ATTCGCCAATTCGCTTTCTTGCAATTTTTGACTAAGTCTGGGATGTTCTA
AAcgttttcgccaacaaaaatcataaaaaaagaaataagtttatacctaa
actaccAGCAGCCATCAAGAAACGTCCAAATTCTCGCCATCTTGAAATTT
ATGATCTCACATGAATTTTTACTATCCAACCACGCTCTTTTATTCACCTG
CAATTCTGTCGGCGAGTAACTCGTAGAgtaaatggtagagtagagcagCA
AGTAGAAATGCCTAGTTCATTCAGGGGGGACAacagaggcagggtactaa
cccatagggtactaacttgattttttactgaaattttgtttagtaccacc
cacgtatatttagtaccgggtactacttcattttagtctacacaatagac
agatccaggcttttaggccttactcttggtctataggcactgttATAGgt
ggccactagtgacccccaccgggaattgtttattaataggtttaaacata
atagacaacattcacaaaagatgtttatcaatagagattttNNNNNNNNN
aatcttaaattttacagattagaccaaGAGAGGGGTACTATTGTTAGTTT
TTCAGACTGAAAATTGACAGATAATTCAAGCAAACTATCAAACCAgattt
tgtcctttgatttgcacacttcttgaccattttgagaaaaaaaattagtc
gattaaaaaaatttcaaatcaaaaaaattagaatttgaaaaaagtcgaAA
CATTGcaacaaactactttttttattgaaaaacagcaaaattctgtgaaa
aagtacccaaatagtatCCTTTACTTGCTTGAAGAGTGAAAAGTACACAC
ACCCCCACCCCCaaagtagtaccgggtactaacttttttgaaatgcaaaa
atagacaccaccacctggcTATGGGTCAGTACCCTGCCTCTGTACTCCCC
CCTAGTtcatttgctttgaaattttgctactttgaatggtcaggcatttg
atggctatNCCTCTGTACTCCCCCCCTAGTtcatttgctttgaaattttg
ctactttgaatggtcaggcatttgatggctatgcaagtttccctccactg
attcaagttaccctccactgattcaagttacccaacttcatgGTATAAGC
AGAGAGTCACAGATGTATTCCTTATAAGAACACACGGCGAATGCATTAGT
CTGCAGTTATAGAAGTGTCTTTGTGATTGCGGCACTTGCCTTTGTTGATT
TGGTCTTCAGGCTATATCTTAACATTCCCGGTTGGATTCCAGGATTGTGT
GATTGCTTGAAGAATGTAGGACTTctaaaattgaggtttttggtgggaaa
aataaaaaaaggtttcaatttCACTGACCCATTAACAATCAATTAGACCT
GTCCTTGGTTTTCCCcctctaaaaaattgaaaaaacctgtttcaattttc
ttaagaagGTTCAAAAATCCAATGATAGTATTAACCTCCAACTGTTCTAA
CTTTTAATACAAATTACAccaatatcaaaacatatcagagggggtGTGTG
CAGCCTAGGGTACTATGGACTGCTTTTTGAGATACTTGGACCACGTTGTc
ataaaaatcacaaaagattGCTTGTTTcaagctccaaccctgaccctaac
tggtaATAACCACACCTAAACTCAACCCTACTAGGTTGCCTGCTGGTCCT
GCCACAATCCCTGCATATCCCATTGAGAAGAATCCATCACTGTCAAGGGG
GGTTCgggttattaaaaaaaacacactaaattggatgttttatgtaattt
ttacaatatttttttactttttagcacgaaATTGGTTCAATGTGTAGAAC
CTCTTTTTTCATCAACTCAGAACCgtcaccctttttagtacattgtacta
actcaaatttagcttgaaaaaaaacaacactcCTTCACCTTTGATTAGTA
CCCCCTGTTTGCTTTGTGCCTGTCTTAAAGTGTTTGTTCCATTTATGTGA
AGTGTATGGtcgtaaaaagattttttcagttttttgcagaaaaaatcatt
aatttttgaagccttgtagGGGTCAGTGGATTCTTCTTCAGTTTCCAAGG
GGGAACCAACCTGCTAGGGCACAATCACGATGATACACTATATGATCGCG
AATATAGTCACTCGAAGGTAATATTGTGTCTAGTGTTTAGAAATTTCAAT
TAGTCAGCATTTTAAAAGCACAATATTCAGATGTTTCTAAAAGCGTAGTA
ACTAAAAGGTGAAACGTCAGAGAAACGAgtggaaacgggtggaaacgata
cagaaacgggtggaaacgacacGAAAACGGGTGGAAGCGATACGGAAATG
GGTGGAAAAGATActgaaacgggtggaaacgacacGAAAACGGGTGGAAG
CGATacggaaacgggtggaaacgatacGGAAACGATatggaaacgggtgg
aaaccaGTGGAAACGATACGGAAATTtatgtaacgctagcccagcatTAA
GATACATCTCCGTCTATCACAGGCTTCGCATAACCGTAAGAGTATACGGA
TATAGGTAATCTATGAaaaagtcgttgcagtgcaaatctttctcaaattt
aaaaacccactttcccgtggaaataattgacgttttttgtttttttggga
cccttggggcataagctacccgttgaccacaaaaattccaaaattcttga
attgaccgttgacaacattagaaCGGGACCCAGTGACGTCACAAGTTTGG
GAAAAACGATAtcgaaatgcgatatctcgagttcaAAAGGAGTTGAGAGG
TCGTTGACCCTTCATTAGATCGAGAATTTTAATGGAAAATAAGTTAGGAg
gggtaagagtgggtatatatagacttttgaaattaaatatattcaaattg
aggcatattaggtccgatgacgtcatcaaaaactgaaaaatacaatatct
agagtttgagaaggatttaagcaatgattgacccctcattggaaagtgaa
aagtttattacacATTGAGATGACATCATTTAGAGCCCAAATGACgtaac
aaaacataaaatttgtcATATCTTTAGTTTTAAACCATTTTAAGTGGTAA
TTTTTCGTTCTTTGGGATTAATTCACTCTATAGTTTCCCCTTTACTATCa
aaagggcttatgatgcgttcagcttatgcgagtttataaaaaaattctca
aatttttccaaggggttgATTCGAGTATGAAAGAGGGAAGTGCAGTTTTA
AAACAAGAAATCttattgtttttcgaaaatgcAGTTATTATTTGGTCTTC
TAAGGCGCTTCATGTCGACCTCAAATTCGTAAATACAGCaagcaacattt
ttttatatattttccatTCTTACACACTGATGACGctctcaatttgacgt
tttactgCTCAAGTCAATAAGTTCCCGTTGTcgattaaaattaaattgaa
atagCTTTCAAACTTACTGAAGAAACTCTCACAATTAaagatttattatt
tactaagcttttatttactatttattttttacttctGGTTCTTATTCCAT
TTGAagcataaaaagatatttacgaTATAATATGTACTCCCGTGGTTGAT
GAAAACTTATTCGAATTCtccttaaaaataaagtttgagagcatcaacaa
taccatgtttatcatcctaagggctttgctaaaccggcgtttgcgacgaa
gGGAACCGACTAATGATACAACAGAAGCTTTGTTCACTGTTGGTCCTTTA
CCCGTTTCCAATCGTTTCTCCCCGTTTCCATGTCGTTTCCACCAGTTTCC
CTGTCGTTTCCAGGGCGATTCCCCACGTTGTTCTAAAAGCGCTATCAGTT
TATTAATTACACTTACACAATCTTTTTTCTAGATGAGTTGGCCAAAAATG
TACAAGATGAATGGAGAAGGATACAACGCCGTAGGAGATTGGCTTGtccc
tcatcacctcaaaacAATACATCCAACCTTCAGAGTCTTTTTGGATCCCC
AACTTCCTTCAACACAGGATATTGGTCACCTCCTAGAGGTTCAATGTCAC
CATGTAGTAGTTCCATGTCTCCCCCCAGAACCACCACTGAGCGTTCAGAA
CAGACCAGTTTGAATGTCAAACAAGTCGTTTCGCTCTGTGAAAGATTGTG
GAAAGAACGCGAGGATAAACTTCGTGAAGAATATGACAAAGTTCTCAATG
ATAGACTGTCAGGTAAATATTTTTACACATGGGCAgctttatttttaaaa
gaaaaagtcacAGCTAATTAAGACGTAGTAGTTGTACAGTTGACTTTCTC
TGGTTCAATCTTTAAGTGGCcaagaattttatttaaattatctatttcat
accttaaaacaagtttttttgcttatttaataacgcaggaatttaatttg
gcaggtgaccaaaaaagttttttcagagggaatttaatttggcggatagc
tggataaattaaatttgacaggaatttaatttggcggttgcaggatattt
ttggcaaaaagcgttattaaataagcaaaaaaacttgttttaagGTATGA
AATAGCACGAATTCGGGGAATGCGtgaaatgaatttaatttggcaggaac
ttaatttggcgccaaattttctttccgccaaaatttcttcctttatggTA
TAGAGAGATTGGAATTGTACTgtatttaaatttcaaataataGAACTTTG
AATTATAAAGCGTTGACTTCCACTGATTCTTGGCCTGTTACTTTTCTCCC
CATTGTTATTCAGCTTTATTTGTTGTTTTcctgtaaaattttatttatac
aaGATTATTCCAATTTACAGAACAGTACGACTCCTTTTTGAAGTTCACTC
AAGATCAAATAATGaggaaatatcaaaattcatcATGTAGTTGTAAGTAT
ACCTTTAAATTTGTTCTCAGAATAAAAGGTTCtttattcttcaaaatttt
tgacttttctgtCTCGAAGGCTTATTTTTCATCAAGGCTAGGCTAGTTTG
GCGAAAGAGACCACATTTTTCTGGGGTAAATACATCTGAATGCATTtatc
tttgtttaaaaaagatGCCGTGAGGgtttttgactttgttttttccctat
ttctgtacattaaatttctttttctatttcagACGTTTCGTAACGTGCTT
TGTCATCTGGACGAATGAATTGTAAATATGTCATTTAAAAATTTGTATTT
CCCTCATTATTATTAGTTTGAATAAGACATTGTTTCAAAGAACCTTATTA
ATTTTGGTATTTAGTACTTTAGAAAGCACTTTCATGTCTCAGAAAAGATC
TGAAAGGAActaaatttgagatttttgctcAGAATGAGGTGATGAGactg
taaaaaaactttcttgacatttttcaaatttgaagcCATTACTTAATGTC
AAAATGGTGCTAGgaatttattttgattgttcaTAGCAATTTTACTAcag
tattttatttttgttccaattATTTCTATTATATTCAGTTGCTGTGGGAG
ATTGAGCCTCTCTCCAAGCAAATTGGAGTTCCAGATGGAATTATTGACTT
TCTGTATCATTTAGTTCCACTAATTTGTATCATAGTTTATGTTAggagat
tttatttttgttccatttttcttcttttacttAAAAGCATATAGGTTAAA
TTTTGAACCACTTTTGATATGGTGAATTTTacttcaagaattttggaatg
TATTCTTTTCTGGGACAATTTCATTATATGTATACTTTCTATAAACTGCC
TAACTAAAGACTCTTAAGGTTTTTTCGAAAAGATATTGAAGAAAAGAATT
GCATCTTTCTGTTGCTATTACCATAGTCGAAGCTTCCAAATTAGCAGTCT
TCGAGACGGAATGATTTCTTACTCAATTgtagtatatatttttgaatgct
tgataaattttagatttttagtgAGTTTAGTATATCCATcagttttatta
ttatttcaatTACTATTACTGGAAATATGGCGTTCTACTGAATTTTAATA
TTGTATTATATTATTTGTTcacaaaataaactttttttgagtATAAAAAA
CT

Coding sequence (CDS) from alignment at scaffold_343:90534..108035+

>TCONS_00060489 ID=TCONS_00060489|Name=TCONS_00060489|organism=Clytia hemisphaerica|type=CDS|length=2910bp|location=Sequence derived from alignment at scaffold_343:90534..108035+ (Clytia hemisphaerica)
ATGGCTTGTGCTGCTCTCAAGAGACCTCACAACTTTGATCTTCTTGGTAA
CAGTCCTGATCATAAAGTCAGTGCATCTCCTAAAAGGAGAAGATGTGGAG
CTGTAGTTACATCTTGTTCGTCAACAAGTATTTCTCCTTTCCTTGAAGCT
ACTCCAAAATTATGcaaagATGAGTTGGCCAAAAATGTACAAGATGAATG
GAGAAGGATACAACGCCGTAGGAGATTGGCTTGtccctcatcacctcaaa
acAATACATCCAACCTTCAGAGTCTTTTTGGATCCCCAACTTCCTTCAAC
ACAGGATATTGGTCACCTCCTAGAGGTTCAATGTCACCATGTAGTAGTTC
CATGTCTCCCCCCAGAACCACCACTGAGCGTTCAGAACAGACCAGTTTGA
ATGTCAAACAAGTCGTTTCGCTCTGTGAAAGATTGTGGAAAGAACGCGAG
GATAAACTTCGTGAAGAATATGACAAAGTTCTCAATGATAGACTGTCAGA
ACAGTACGACTCCTTTTTGAAGTTCACTCAAGATCAAATAATGaggaaat
atcaaaattcatcATGTAGTTACGTTTCGTAAATGGCTTGTGCTGCTCTC
AAGAGACCTCACAACTTTGATCTTCTTGGTAACAGTCCTGATCATAAAGT
CAGTGCATCTCCTAAAAGGAGAAGATGTGGAGCTGTAGTTACATCTTGTT
CGTCAACAAGTATTTCTCCTTTCCTTGAAGCTACTCCAAAATTATGcaaa
gATGAGTTGGCCAAAAATGTACAAGATGAATGGAGAAGGATACAACGCCG
TAGGAGATTGGCTTGtccctcatcacctcaaaacAATACATCCAACCTTC
AGAGTCTTTTTGGATCCCCAACTTCCTTCAACACAGGATATTGGTCACCT
CCTAGAGGTTCAATGTCACCATGTAGTAGTTCCATGTCTCCCCCCAGAAC
CACCACTGAGCGTTCAGAACAGACCAGTTTGAATGTCAAACAAGTCGTTT
CGCTCTGTGAAAGATTGTGGAAAGAACGCGAGGATAAACTTCGTGAAGAA
TATGACAAAGTTCTCAATGATAGACTGTCAGAACAGTACGACTCCTTTTT
GAAGTTCACTCAAGATCAAATAATGaggaaatatcaaaattcatcATGTA
GTTACGTTTCGTAAATGGCTTGTGCTGCTCTCAAGAGACCTCACAACTTT
GATCTTCTTGGTAACAGTCCTGATCATAAAGTCAGTGCATCTCCTAAAAG
GAGAAGATGTGGAGCTGTAGTTACATCTTGTTCGTCAACAAGTATTTCTC
CTTTCCTTGAAGCTACTCCAAAATTATGcaaagATGAGTTGGCCAAAAAT
GTACAAGATGAATGGAGAAGGATACAACGCCGTAGGAGATTGGCTTGtcc
ctcatcacctcaaaacAATACATCCAACCTTCAGAGTCTTTTTGGATCCC
CAACTTCCTTCAACACAGGATATTGGTCACCTCCTAGAGGTTCAATGTCA
CCATGTAGTAGTTCCATGTCTCCCCCCAGAACCACCACTGAGCGTTCAGA
ACAGACCAGTTTGAATGTCAAACAAGTCGTTTCGCTCTGTGAAAGATTGT
GGAAAGAACGCGAGGATAAACTTCGTGAAGAATATGACAAAGTTCTCAAT
GATAGACTGTCAGAACAGTACGACTCCTTTTTGAAGTTCACTCAAGATCA
AATAATGaggaaatatcaaaattcatcATGTAGTTACGTTTCGTAAATGG
CTTGTGCTGCTCTCAAGAGACCTCACAACTTTGATCTTCTTGGTAACAGT
CCTGATCATAAAGTCAGTGCATCTCCTAAAAGGAGAAGATGTGGAGCTGT
AGTTACATCTTGTTCGTCAACAAGTATTTCTCCTTTCCTTGAAGCTACTC
CAAAATTATGcaaagATGAGTTGGCCAAAAATGTACAAGATGAATGGAGA
AGGATACAACGCCGTAGGAGATTGGCTTGtccctcatcacctcaaaacAA
TACATCCAACCTTCAGAGTCTTTTTGGATCCCCAACTTCCTTCAACACAG
GATATTGGTCACCTCCTAGAGGTTCAATGTCACCATGTAGTAGTTCCATG
TCTCCCCCCAGAACCACCACTGAGCGTTCAGAACAGACCAGTTTGAATGT
CAAACAAGTCGTTTCGCTCTGTGAAAGATTGTGGAAAGAACGCGAGGATA
AACTTCGTGAAGAATATGACAAAGTTCTCAATGATAGACTGTCAGAACAG
TACGACTCCTTTTTGAAGTTCACTCAAGATCAAATAATGaggaaatatca
aaattcatcATGTAGTTACGTTTCGTAAATGGCTTGTGCTGCTCTCAAGA
GACCTCACAACTTTGATCTTCTTGGTAACAGTCCTGATCATAAAGTCAGT
GCATCTCCTAAAAGGAGAAGATGTGGAGCTGTAGTTACATCTTGTTCGTC
AACAAGTATTTCTCCTTTCCTTGAAGCTACTCCAAAATTATGcaaagATG
AGTTGGCCAAAAATGTACAAGATGAATGGAGAAGGATACAACGCCGTAGG
AGATTGGCTTGtccctcatcacctcaaaacAATACATCCAACCTTCAGAG
TCTTTTTGGATCCCCAACTTCCTTCAACACAGGATATTGGTCACCTCCTA
GAGGTTCAATGTCACCATGTAGTAGTTCCATGTCTCCCCCCAGAACCACC
ACTGAGCGTTCAGAACAGACCAGTTTGAATGTCAAACAAGTCGTTTCGCT
CTGTGAAAGATTGTGGAAAGAACGCGAGGATAAACTTCGTGAAGAATATG
ACAAAGTTCTCAATGATAGACTGTCAGAACAGTACGACTCCTTTTTGAAG
TTCACTCAAGATCAAATAATGaggaaatatcaaaattcatcATGTAGTTA
CGTTTCGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038051XLOC_038051Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060489-exon-scaffold_343-1491911889:90534..90902TCONS_00060489-exon-scaffold_343-1491911889:90534..90902Clytia hemisphaericaexon
TCONS_00060489-exon-scaffold_343-1510915933:90534..90902TCONS_00060489-exon-scaffold_343-1510915933:90534..90902Clytia hemisphaericaexon
TCONS_00060489-exon-scaffold_343-1575043694:90534..90902TCONS_00060489-exon-scaffold_343-1575043694:90534..90902Clytia hemisphaericaexon
TCONS_00060489-exon-scaffold_343-1491911889:92291..92349TCONS_00060489-exon-scaffold_343-1491911889:92291..92349Clytia hemisphaericaexon
TCONS_00060489-exon-scaffold_343-1510915933:92291..92349TCONS_00060489-exon-scaffold_343-1510915933:92291..92349Clytia hemisphaericaexon
TCONS_00060489-exon-scaffold_343-1575043694:92291..92349TCONS_00060489-exon-scaffold_343-1575043694:92291..92349Clytia hemisphaericaexon
TCONS_00060489-exon-scaffold_343-1491911889:105866..106195TCONS_00060489-exon-scaffold_343-1491911889:105866..106195Clytia hemisphaericaexon
TCONS_00060489-exon-scaffold_343-1510915933:105866..106195TCONS_00060489-exon-scaffold_343-1510915933:105866..106195Clytia hemisphaericaexon
TCONS_00060489-exon-scaffold_343-1575043694:105866..106195TCONS_00060489-exon-scaffold_343-1575043694:105866..106195Clytia hemisphaericaexon
TCONS_00060489-exon-scaffold_343-1491911889:106804..106875TCONS_00060489-exon-scaffold_343-1491911889:106804..106875Clytia hemisphaericaexon
TCONS_00060489-exon-scaffold_343-1510915933:106804..106875TCONS_00060489-exon-scaffold_343-1510915933:106804..106875Clytia hemisphaericaexon
TCONS_00060489-exon-scaffold_343-1575043694:106804..106875TCONS_00060489-exon-scaffold_343-1575043694:106804..106875Clytia hemisphaericaexon
TCONS_00060489-exon-scaffold_343-1491911889:107116..108035TCONS_00060489-exon-scaffold_343-1491911889:107116..108035Clytia hemisphaericaexon
TCONS_00060489-exon-scaffold_343-1510915933:107116..108035TCONS_00060489-exon-scaffold_343-1510915933:107116..108035Clytia hemisphaericaexon
TCONS_00060489-exon-scaffold_343-1575043694:107116..108035TCONS_00060489-exon-scaffold_343-1575043694:107116..108035Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060489-proteinTCONS_00060489-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_343supercontigscaffold_343:90534..108035 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0031731	0.483179	0.096475	0.00353565	0.00019752	0	0.0037961	6.81934e-08	0.0689476	2.74707	12.6101	6.73521	0.82314	3.11757	0.14338	3.60157e-06	6.19069	0.872427	5.29266	2.76934	4.19798	0.629208	0.00290781	0.305283	2.51575e-07	5.58127e-08	0.00246886	0.0310723	7.42455	0.00190725
Blast
[Close]
BLAST of TCONS_00060489 vs. Swiss-Prot (Human)
Match: AKIR1 (Akirin-1 OS=Homo sapiens GN=AKIRIN1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.610e-18
Identity = 36/65 (55.38%), Postives = 51/65 (78.46%), Query Frame = 2 
Query:  644 EQTSLNVKQVVSLCERLWKEREDKLREEYDKVLNDRLSEQYDSFLKFTQDQIMRKYQNSSCSYVS 838
            +Q +  ++QV  +CERL K+ EDK+REEY+++LN +L+EQY+SF+KFT DQIMR+Y     SYVS
Sbjct:  128 DQPTFTLRQVGIICERLLKDYEDKIREEYEQILNTKLAEQYESFVKFTHDQIMRRYGTRPTSYVS 192
The following BLAST results are available for this feature:
BLAST of TCONS_00060489 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AKIR12.610e-1855.38Akirin-1 OS=Homo sapiens GN=AKIRIN1 PE=1 SV=1[more]
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