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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060472 ID=TCONS_00060472|Name=TCONS_00060472|organism=Clytia hemisphaerica|type=transcript|length=608bp
GTCGTTTAAATACTGGTAATGTGGGTGCTCCAAAGAATGAAATAACTTCA
GAACAGctaaattttttcattgaaaatggaTTTAATGGACCGCAAATAGC
TAAATTGTTGAATGTTTCTTATAATACAGTTAAAAGAAGATTAAAAGAAT
ACAGTATGATATCAGTTTGTGTCAAACATTTACACAAATAACTGATGATG
ACCTTGACAATGTGGTGGAATTGATACTAAAAGAACACCCAAATACTGGA
TATAAGCGAATGAGGGGTTTCCTTACTGCAAGAAGAATGAAGATTCAAGA
ATACAGAGTACGTGAATCTATGAGAGTTGAACCTGAAGGAGTTATAATGA
GGCAGCTTCGCTCAGTTCCGATATATCGCAGGAAATATCAAGTGAAAGGT
CCATTGTCACTTTGGCATTTGGATGGTAATCATAAACTAATAACATACGG
CTTTGTGATCCACGGTTGCATTGATGGTTTTTCGAGAAGGATAATGTATC
TACGTTGCGCCGATATCAACAAATCAAAtgctgttttgaatttctttgaA
GATGCTGTTACACAAAACATTGATTgggcccatgttcaatgtttttcGTT
GACTTTCA Run BLAST on NCBI protein sequence of TCONS_00060472-protein >TCONS_00060472-protein ID=TCONS_00060472-protein|Name=TCONS_00060472-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
MRGFLTARRMKIQEYRVRESMRVEPEGVIMRQLRSVPIYRRKYQVKGPLS
LWHLDGNHKLITYGFVIHGCIDGFSRRIMYLRCADINKSNAVLNFFEDAV
TQNIDWAHVQCFSLTF Run BLAST on NCBI transcript from alignment at scaffold_342:56034..56944- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060472 ID=TCONS_00060472|Name=TCONS_00060472|organism=Clytia hemisphaerica|type=transcript|length=911bp|location=Sequence derived from alignment at scaffold_342:56034..56944- (Clytia hemisphaerica)
GTCGTTTAAATACTGGTAATGTGGGTGCTCCAAAGAATGAAATAACTTCA
GAACAGCTAAATTTTTTCATTGAAAATGGATTTAATGGACCGCAAATAGC
TAAATTGTTGAATGTTTCTTATAATACAGTTAAAAGAAGATTAAAAGAAT
ACAGTATGATATCAGTTTGTGTCAAACATTTACACAAATAACTGATGATG
ACCTTGACAATGTGGTGGAATTGATACTAAAAGAACACCCAAATACTGGA
TATAAGCGAATGAGGGGTTTCCTTACTGCAAGAAGAATGAAGATTCAAGA
ATACAGAGTACGTGAATCTATGAGAGTTGAACCTGAAGGAGTTATAATGA
GGCAGCTTCGCTCAGTTCCGATATATCGCAGGAAATATCAAGTGAAAGGT
CCATTGTCACTTTGGCATTTGGATGGTAATCATAAACTAATAACGTAAGT
ACTTACCTTGCTTTATTAAGAAACAGATTTTGAGTGACTCAGAAAAGTAT
TTAATGGTAACTGTGTCTGAAATAGTGTGAATGTTGTCAACTGAATTTTT
CCCATTGTAATGAGGAGAGGGAAAATTTTTGATATTAATCTTATGGTTGA
TTGAAATTCGATTGACGTTTTTGCTTACATTAATTCGAAATTTCCCATAA
ATTTGTAATTCCCCTCCTAGTTTTTGTAATTTCCCTGTTCTTAAATTCGA
ACTTTTGAATAGCGAAGGTTTGAATTTCGAACTCTTTGCTTTAATAGATA
CGGCTTTGTGATCCACGGTTGCATTGATGGTTTTTCGAGAAGGATAATGT
ATCTACGTTGCGCCGATATCAACAAATCAAATGCTGTTTTGAATTTCTTT
GAAGATGCTGTTACACAAAACATTGATTGGGCCCATGTTCAATGTTTTTC
GTTGACTTTCA Coding sequence (CDS) from alignment at scaffold_342:56034..56944- >TCONS_00060472 ID=TCONS_00060472|Name=TCONS_00060472|organism=Clytia hemisphaerica|type=CDS|length=696bp|location=Sequence derived from alignment at scaffold_342:56034..56944- (Clytia hemisphaerica)
ATACGGCTTTGTGATCCACGGTTGCATTGATGGTTTTTCGAGAAGGATAA
TGTATCTACGTTGCGCCGATATCAACAAATCAAATGCTGTTTTGAATTTC
TTTGAAGATGCTGTTACACAAAACATTGATTGGGCCCATGTTCAATGTTT
TTCGTTGACTTTCATGAGGGGTTTCCTTACTGCAAGAAGAATGAAGATTC
AAGAATACAGAGTACGTGAATCTATGAGAGTTGAACCTGAAGGAGTTATA
ATGAGGCAGCTTCGCTCAGTTCCGATATATCGCAGGAAATATCAAGTGAA
AGGTCCATTGTCACTTTGGCATTTGGATGGTAATCATAAACTAATAACAT
ACGGCTTTGTGATCCACGGTTGCATTGATGGTTTTTCGAGAAGGATAATG
TATCTACGTTGCGCCGATATCAACAAATCAAATGCTGTTTTGAATTTCTT
TGAAGATGCTGTTACACAAAACATTGATTGGGCCCATGTTCAATGTTTTT
CGTTGACTTTCATGAGGGGTTTCCTTACTGCAAGAAGAATGAAGATTCAA
GAATACAGAGTACGTGAATCTATGAGAGTTGAACCTGAAGGAGTTATAAT
GAGGCAGCTTCGCTCAGTTCCGATATATCGCAGGAAATATCAAGTGAAAG
GTCCATTGTCACTTTGGCATTTGGATGGTAATCATAAACTAATAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060472-exon-scaffold_342-1575043694:56501..56944 | TCONS_00060472-exon-scaffold_342-1575043694:56501..56944 | Clytia hemisphaerica | exon |
| TCONS_00060472-exon-scaffold_342-1575043694:56034..56197 | TCONS_00060472-exon-scaffold_342-1575043694:56034..56197 | Clytia hemisphaerica | exon |
| TCONS_00060472-exon-scaffold_342-1510915933:56501..56944 | TCONS_00060472-exon-scaffold_342-1510915933:56501..56944 | Clytia hemisphaerica | exon |
| TCONS_00060472-exon-scaffold_342-1510915933:56034..56197 | TCONS_00060472-exon-scaffold_342-1510915933:56034..56197 | Clytia hemisphaerica | exon |
| TCONS_00060472-exon-scaffold_342-1491911889:56501..56944 | TCONS_00060472-exon-scaffold_342-1491911889:56501..56944 | Clytia hemisphaerica | exon |
| TCONS_00060472-exon-scaffold_342-1491911889:56034..56197 | TCONS_00060472-exon-scaffold_342-1491911889:56034..56197 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_342 | supercontig | scaffold_342:56034..56944 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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