TCONS_00060460 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060460
Unique NameTCONS_00060460
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length320

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060460 ID=TCONS_00060460|Name=TCONS_00060460|organism=Clytia hemisphaerica|type=transcript|length=320bp
ATTATGCTCTATTTTTTTCGCATCTTAATTATGCTTGCCAAATCTGGGGT
CAAAAACATAACTATAATGTGGAAAGAGTCTTTAAACTTCAAAAACGATG
CAAACGAATCATGactttttctgatttcaatGCTCACTCTAGTAAAATCT
TTTATGAACttaatcttcttaaaatttctgATCACATAAATCTACTAAAT
ATAACTCTTGCTCACAGGATCTTATGTGGTTTTTCTCCAATTAGACTCAA
GAATCTCTTCTCTCTAAACTTTTatcaacataaacaaagaacCAGAGGGA
AATCAGTGCGTCTTCTTTTC
Run BLAST on NCBI

transcript from alignment at scaffold_341:484597..484916

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060460 ID=TCONS_00060460|Name=TCONS_00060460|organism=Clytia hemisphaerica|type=transcript|length=320bp|location=Sequence derived from alignment at scaffold_341:484597..484916 (Clytia hemisphaerica)
GAAAAGAAGACGCACTGATTTCCCTCTGgttctttgtttatgttgatAAA
AGTTTAGAGAGAAGAGATTCTTGAGTCTAATTGGAGAAAAACCACATAAG
ATCCTGTGAGCAAGAGTTATATTTAGTAGATTTATGTGATcagaaatttt
aagaagattaaGTTCATAAAAGATTTTACTAGAGTGAGCattgaaatcag
aaaaagtCATGATTCGTTTGCATCGTTTTTGAAGTTTAAAGACTCTTTCC
ACATTATAGTTATGTTTTTGACCCCAGATTTGGCAAGCATAATTAAGATG
CGAAAAAAATAGAGCATAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038026XLOC_038026Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060460-exon-scaffold_341-1491911889:484597..484916TCONS_00060460-exon-scaffold_341-1491911889:484597..484916Clytia hemisphaericaexon
TCONS_00060460-exon-scaffold_341-1510915933:484597..484916TCONS_00060460-exon-scaffold_341-1510915933:484597..484916Clytia hemisphaericaexon
TCONS_00060460-exon-scaffold_341-1575043694:484597..484916TCONS_00060460-exon-scaffold_341-1575043694:484597..484916Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_341supercontigscaffold_341:484597..484916 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.887148	0.934923	2.31948	3.33837	5.96409	0	1.50438	2.60256	0.269304	0.667153	1.94267	0.782004	0.212543	0.220728	0.181468	0.90559	0	0.737693	1.6986	0	1.88079	1.83077	0	0.782526	0	0.918677	4.73773	2.10088	2.29485	0.789798
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060460 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top