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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060456 ID=TCONS_00060456|Name=TCONS_00060456|organism=Clytia hemisphaerica|type=transcript|length=1336bp
ACAGCAAAAAGTAcaactagaaaaataaaaacaaaagaaaggaaaGCAAA
ACCAGAAGACATCACTACAGAAATAATATGACAGAGTTGAGTTTCAACCA
GCATGCAAACCAAGTCGCGAACAATATCAATGTAAATTCTTTACATCAAA
ACAAGGCTGATGTTGACTATGGTTCTGACTATGAAGAAAAACGAGTCACA
ATTGACGACGATTTACCGGTCATTTATAAACCCAAATCTTATAGTATCCC
AGATCTCATTGATGAATCGTACGAAGGCTCCAGACATCAGCATCCTGCAC
TTAAATTCAGTATCTCAAATTCAACCACAGATTCATCCGCATTTTTACAG
AAAttctttccaaaagaaaaacCGGTCACCTGCAGTCCTTTAGTATTGAG
ACGAAATAAGATTTCTAAAGAACCGTCACCGAAAACTTGGGCTAAGAATG
AATTGAGTAGAGACCGTGGAAAGACGTATCCACATTACTCTTCCGACGAA
GAAGATACAACCACGAAAGTATCGACCAGCAAAAGACGTTCATTGTCTCA
AGGAGCGTACGATGCAAAATGGATGAATTTTTGGCGTAAAATTAACATCC
TTCCTAAGTTaaataaaatgaagaagaaaagaaagaaatcgaaagtgaga
CAACCGTCATTTGATGATCTTCCACCAATCAGATGCAGTGTATCAGCAAA
CAATATACTGGATACAGATACTGAAAAGAACAATAACTCACAATACAACA
AAACTAAAGATAATGAACATATTTTCAGCAGCACAACTAAAAGCTATAAG
CCTGCAGAACAATCACTAAAAGATACAGATACAAAGAACAAGACAAGAAA
TAATGTTAAGCTGAAACGTTTTGGCTCGTTACCTATATTGTAAATGTGGT
ATTGACGattgatgattatttttgaaatgtttataAATAGAGAGATGATA
ATATAAGGAGTGACTTGTGAGAGATTTGAATCTACAAGCATTGATTTACA
GGAATAATAAAGAAATCTTACTGACATTTTAAATGATACAACTTTTGTTA
ATGCACGGTCAAAAGCTCAAAGTGTTCATTAGatcatggcccccggcgtg
cgaaTCGAATTGAGGGTGCCGAAAAAATATGTCGCCCTCCCGTTGACGGG
GGCCATGTAGATTACAGTGTGTCATGTGTTTCCCTAAAATGTCATTGTGA
TTTTTTCTATGATCATAAATCTACTAAGTTATTgatttaatcaatttttg
aattCTAGATATTTGTTCTTGTACATAATCTTTCTTGTGACTCTACAGAA
AGATATAATTTGAAGTATAGTTTTGGATGAAATACc Run BLAST on NCBI protein sequence of TCONS_00060456-protein >TCONS_00060456-protein ID=TCONS_00060456-protein|Name=TCONS_00060456-protein|organism=Clytia hemisphaerica|type=polypeptide|length=271bp
MTELSFNQHANQVANNINVNSLHQNKADVDYGSDYEEKRVTIDDDLPVIY
KPKSYSIPDLIDESYEGSRHQHPALKFSISNSTTDSSAFLQKFFPKEKPV
TCSPLVLRRNKISKEPSPKTWAKNELSRDRGKTYPHYSSDEEDTTTKVST
SKRRSLSQGAYDAKWMNFWRKINILPKLNKMKKKRKKSKVRQPSFDDLPP
IRCSVSANNILDTDTEKNNNSQYNKTKDNEHIFSSTTKSYKPAEQSLKDT
DTKNKTRNNVKLKRFGSLPIL Run BLAST on NCBI transcript from alignment at scaffold_341:271473..272808 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060456 ID=TCONS_00060456|Name=TCONS_00060456|organism=Clytia hemisphaerica|type=transcript|length=1336bp|location=Sequence derived from alignment at scaffold_341:271473..272808 (Clytia hemisphaerica)
gGTATTTCATCCAAAACTATACTTCAAATTATATCTTTCTGTAGAGTCAC
AAGAAAGATTATGTACAAGAACAAATATCTAGaattcaaaaattgattaa
atcAATAACTTAGTAGATTTATGATCATAGAAAAAATCACAATGACATTT
TAGGGAAACACATGACACACTGTAATCTACATGGCCCCCGTCAACGGGAG
GGCGACATATTTTTTCGGCACCCTCAATTCGAttcgcacgccgggggcca
tgatCTAATGAACACTTTGAGCTTTTGACCGTGCATTAACAAAAGTTGTA
TCATTTAAAATGTCAGTAAGATTTCTTTATTATTCCTGTAAATCAATGCT
TGTAGATTCAAATCTCTCACAAGTCACTCCTTATATTATCATCTCTCTAT
TtataaacatttcaaaaataatcatcaatCGTCAATACCACATTTACAAT
ATAGGTAACGAGCCAAAACGTTTCAGCTTAACATTATTTCTTGTCTTGTT
CTTTGTATCTGTATCTTTTAGTGATTGTTCTGCAGGCTTATAGCTTTTAG
TTGTGCTGCTGAAAATATGTTCATTATCTTTAGTTTTGTTGTATTGTGAG
TTATTGTTCTTTTCAGTATCTGTATCCAGTATATTGTTTGCTGATACACT
GCATCTGATTGGTGGAAGATCATCAAATGACGGTTGtctcactttcgatt
tctttcttttcttcttcattttatttAACTTAGGAAGGATGTTAATTTTA
CGCCAAAAATTCATCCATTTTGCATCGTACGCTCCTTGAGACAATGAACG
TCTTTTGCTGGTCGATACTTTCGTGGTTGTATCTTCTTCGTCGGAAGAGT
AATGTGGATACGTCTTTCCACGGTCTCTACTCAATTCATTCTTAGCCCAA
GTTTTCGGTGACGGTTCTTTAGAAATCTTATTTCGTCTCAATACTAAAGG
ACTGCAGGTGACCGgtttttcttttggaaagaaTTTCTGTAAAAATGCGG
ATGAATCTGTGGTTGAATTTGAGATACTGAATTTAAGTGCAGGATGCTGA
TGTCTGGAGCCTTCGTACGATTCATCAATGAGATCTGGGATACTATAAGA
TTTGGGTTTATAAATGACCGGTAAATCGTCGTCAATTGTGACTCGTTTTT
CTTCATAGTCAGAACCATAGTCAACATCAGCCTTGTTTTGATGTAAAGAA
TTTACATTGATATTGTTCGCGACTTGGTTTGCATGCTGGTTGAAACTCAA
CTCTGTCATATTATTTCTGTAGTGATGTCTTCTGGTTTTGCtttcctttc
ttttgtttttatttttctagttgTACTTTTTGCTGT Coding sequence (CDS) from alignment at scaffold_341:271473..272808 >TCONS_00060456 ID=TCONS_00060456|Name=TCONS_00060456|organism=Clytia hemisphaerica|type=CDS|length=816bp|location=Sequence derived from alignment at scaffold_341:271473..272808 (Clytia hemisphaerica)
TTACAATATAGGTAACGAGCCAAAACGTTTCAGCTTAACATTATTTCTTG
TCTTGTTCTTTGTATCTGTATCTTTTAGTGATTGTTCTGCAGGCTTATAG
CTTTTAGTTGTGCTGCTGAAAATATGTTCATTATCTTTAGTTTTGTTGTA
TTGTGAGTTATTGTTCTTTTCAGTATCTGTATCCAGTATATTGTTTGCTG
ATACACTGCATCTGATTGGTGGAAGATCATCAAATGACGGTTGtctcact
ttcgatttctttcttttcttcttcattttatttAACTTAGGAAGGATGTT
AATTTTACGCCAAAAATTCATCCATTTTGCATCGTACGCTCCTTGAGACA
ATGAACGTCTTTTGCTGGTCGATACTTTCGTGGTTGTATCTTCTTCGTCG
GAAGAGTAATGTGGATACGTCTTTCCACGGTCTCTACTCAATTCATTCTT
AGCCCAAGTTTTCGGTGACGGTTCTTTAGAAATCTTATTTCGTCTCAATA
CTAAAGGACTGCAGGTGACCGgtttttcttttggaaagaaTTTCTGTAAA
AATGCGGATGAATCTGTGGTTGAATTTGAGATACTGAATTTAAGTGCAGG
ATGCTGATGTCTGGAGCCTTCGTACGATTCATCAATGAGATCTGGGATAC
TATAAGATTTGGGTTTATAAATGACCGGTAAATCGTCGTCAATTGTGACT
CGTTTTTCTTCATAGTCAGAACCATAGTCAACATCAGCCTTGTTTTGATG
TAAAGAATTTACATTGATATTGTTCGCGACTTGGTTTGCATGCTGGTTGA
AACTCAACTCTGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060456-exon-scaffold_341-1491911889:271473..272808 | TCONS_00060456-exon-scaffold_341-1491911889:271473..272808 | Clytia hemisphaerica | exon |
| TCONS_00060456-exon-scaffold_341-1510915933:271473..272808 | TCONS_00060456-exon-scaffold_341-1510915933:271473..272808 | Clytia hemisphaerica | exon |
| TCONS_00060456-exon-scaffold_341-1575043694:271473..272808 | TCONS_00060456-exon-scaffold_341-1575043694:271473..272808 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_341 | supercontig | scaffold_341:271473..272808 . |
Blast
The following BLAST results are available for this feature:
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