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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060443 ID=TCONS_00060443|Name=TCONS_00060443|organism=Clytia hemisphaerica|type=transcript|length=1528bp
NNACAGGAGGGTCGTGTGCGTTGGCTGCTTGAAGTGCGTTTTGTTCATGA
TATTGTAGGAAAGCTTCTGCGATTACGACCATTAGTGCTAAACCGATCGG
TGCCGAATTCTGAAGTCGGTACAGTTTATCATTCCACAGGAAGTAACATT
TTGATAGACAAAGTTCAATCAAAGTTCGGATGTCTTCAACCGTTAGCTTT
GTCCTATTTGGTAGGTCGTTATCGTTTTCAAGCATCTGGACGATTATGTT
AGTAGCTTCCTCTACAGGTACTGTCGGATAGAGGTTTACTACGTCGTACG
ACACTTGAATTTCATCGGGGTCAACGTCCCAGGATCTAGTGAGCTCAGCG
AATGTGTACGAGTTTTTAAGCCTTGTGTTGTTTTTGTTTAGAGTTGGTTG
AATAATTTTCACAAGGTATTCTGAAGTTCCGTACGATGGAGTACCGATAG
TTGAAACTACCACTCTCATAGGGTAATTCTTTTCCGGTTTATGAGCTTTG
ATGGTTCCGTACATTCGAGGTGGTATCGGATCGGATGGATACAGTTTTTT
GTACTCTTTATCAGTGAACTTCCCAGCTTGGTGAAGGGGTCGAAGTGTAT
TCTGAAACTTTCGTGCCAATGTCGATGTTGGATCTTGTGTGATGATTTCC
GTGTTGCCGAGTTGTTCTTCGATTTTCGCGATAGCATCATCTCTATCGAT
TCTAACAAGACCAGCACCTTTGTCAAATGGGTAAATAACATTCTGGTTAT
CGGATTTAAGTTCTTTGAGTGCTTTTCGTTGTCGAGAATCAAGATTGTTT
TTAGGTGGTTTTGTCATTTTAAGATCGCGCAACACGTCTTGTCGAAGTTT
CATTGGTACTGTATCTTCTTTGGTCGCGTATTTGATTTTAAGTGCAGTTG
ACTCGGTCTTCGAAATGATGTCGAGGTACGGGATGCGCGTTTGGGTTGGT
ACAAACTTTGGTCCAAGGTCGAGTAGCTCACGATGGTGGTCTGGCAACGG
GTCATTGCAGAGGTTTAACGTAACCGGTTTGATCGTTTTTTGCTCGATGG
TGATGTTTGGTCGATCGTTTGTTGGTGACAGTTTTTCGAATTTCGTTTTC
AAACGTTCTTTCCACTGGAGAAAGGATGTTGTCTCTGACTTATCGGTGAC
AGTCTGTATAATGTTCATATGTTCAGCCGATAGTATGGGTCGAAGTTCAG
TCAGAAGATCTTTGATTCGTTTTAACGTTTGAAAGAATTTCGACTTTGCA
TCATTTTTCGCACTAAGTAAAAGTTCAAAGCGGTACTTATCTGTAACATT
GATCCCTCTTCGCGATTGTAACGGGCTGCGTATCCGCATGGATTTTGGTA
TAATTTTGCGCGAGATGCATCTCTTCAGGAAGGTAATTTGGTTCTTGAGC
TTGGCTTTTTGGATCTTTTCCATTTTGAGTTTGTATGTTTTGTTGTATGT
ATCAGCTCCATAGCTGCTGGTGATCATTGCCTTTAGTGTCATACTTTTGA
TACGAATGTAGATTATaatttaaataac Run BLAST on NCBI protein sequence of TCONS_00060443-protein >TCONS_00060443-protein ID=TCONS_00060443-protein|Name=TCONS_00060443-protein|organism=Clytia hemisphaerica|type=polypeptide|length=497bp
MTLKAMITSSYGADTYNKTYKLKMEKIQKAKLKNQITFLKRCISRKIIPK
SMRIRSPLQSRRGINVTDKYRFELLLSAKNDAKSKFFQTLKRIKDLLTEL
RPILSAEHMNIIQTVTDKSETTSFLQWKERLKTKFEKLSPTNDRPNITIE
QKTIKPVTLNLCNDPLPDHHRELLDLGPKFVPTQTRIPYLDIISKTESTA
LKIKYATKEDTVPMKLRQDVLRDLKMTKPPKNNLDSRQRKALKELKSDNQ
NVIYPFDKGAGLVRIDRDDAIAKIEEQLGNTEIITQDPTSTLARKFQNTL
RPLHQAGKFTDKEYKKLYPSDPIPPRMYGTIKAHKPEKNYPMRVVVSTIG
TPSYGTSEYLVKIIQPTLNKNNTRLKNSYTFAELTRSWDVDPDEIQVSYD
VVNLYPTVPVEEATNIIVQMLENDNDLPNRTKLTVEDIRTLIELCLSKCY
FLWNDKLYRLQNSAPIGLALMVVIAEAFLQYHEQNALQAANAHDPPX Run BLAST on NCBI transcript from alignment at scaffold_341:53440..54967 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060443 ID=TCONS_00060443|Name=TCONS_00060443|organism=Clytia hemisphaerica|type=transcript|length=1528bp|location=Sequence derived from alignment at scaffold_341:53440..54967 (Clytia hemisphaerica)
gttatttaaattATAATCTACATTCGTATCAAAAGTATGACACTAAAGGC
AATGATCACCAGCAGCTATGGAGCTGATACATACAACAAAACATACAAAC
TCAAAATGGAAAAGATCCAAAAAGCCAAGCTCAAGAACCAAATTACCTTC
CTGAAGAGATGCATCTCGCGCAAAATTATACCAAAATCCATGCGGATACG
CAGCCCGTTACAATCGCGAAGAGGGATCAATGTTACAGATAAGTACCGCT
TTGAACTTTTACTTAGTGCGAAAAATGATGCAAAGTCGAAATTCTTTCAA
ACGTTAAAACGAATCAAAGATCTTCTGACTGAACTTCGACCCATACTATC
GGCTGAACATATGAACATTATACAGACTGTCACCGATAAGTCAGAGACAA
CATCCTTTCTCCAGTGGAAAGAACGTTTGAAAACGAAATTCGAAAAACTG
TCACCAACAAACGATCGACCAAACATCACCATCGAGCAAAAAACGATCAA
ACCGGTTACGTTAAACCTCTGCAATGACCCGTTGCCAGACCACCATCGTG
AGCTACTCGACCTTGGACCAAAGTTTGTACCAACCCAAACGCGCATCCCG
TACCTCGACATCATTTCGAAGACCGAGTCAACTGCACTTAAAATCAAATA
CGCGACCAAAGAAGATACAGTACCAATGAAACTTCGACAAGACGTGTTGC
GCGATCTTAAAATGACAAAACCACCTAAAAACAATCTTGATTCTCGACAA
CGAAAAGCACTCAAAGAACTTAAATCCGATAACCAGAATGTTATTTACCC
ATTTGACAAAGGTGCTGGTCTTGTTAGAATCGATAGAGATGATGCTATCG
CGAAAATCGAAGAACAACTCGGCAACACGGAAATCATCACACAAGATCCA
ACATCGACATTGGCACGAAAGTTTCAGAATACACTTCGACCCCTTCACCA
AGCTGGGAAGTTCACTGATAAAGAGTACAAAAAACTGTATCCATCCGATC
CGATACCACCTCGAATGTACGGAACCATCAAAGCTCATAAACCGGAAAAG
AATTACCCTATGAGAGTGGTAGTTTCAACTATCGGTACTCCATCGTACGG
AACTTCAGAATACCTTGTGAAAATTATTCAACCAACTCTAAACAAAAACA
ACACAAGGCTTAAAAACTCGTACACATTCGCTGAGCTCACTAGATCCTGG
GACGTTGACCCCGATGAAATTCAAGTGTCGTACGACGTAGTAAACCTCTA
TCCGACAGTACCTGTAGAGGAAGCTACTAACATAATCGTCCAGATGCTTG
AAAACGATAACGACCTACCAAATAGGACAAAGCTAACGGTTGAAGACATC
CGAACTTTGATTGAACTTTGTCTATCAAAATGTTACTTCCTGTGGAATGA
TAAACTGTACCGACTTCAGAATTCGGCACCGATCGGTTTAGCACTAATGG
TCGTAATCGCAGAAGCTTTCCTACAATATCATGAACAAAACGCACTTCAA
GCAGCCAACGCACACGACCCTCCTGTNN Coding sequence (CDS) from alignment at scaffold_341:53440..54967 >TCONS_00060443 ID=TCONS_00060443|Name=TCONS_00060443|organism=Clytia hemisphaerica|type=CDS|length=1491bp|location=Sequence derived from alignment at scaffold_341:53440..54967 (Clytia hemisphaerica)
ATGACACTAAAGGCAATGATCACCAGCAGCTATGGAGCTGATACATACAA
CAAAACATACAAACTCAAAATGGAAAAGATCCAAAAAGCCAAGCTCAAGA
ACCAAATTACCTTCCTGAAGAGATGCATCTCGCGCAAAATTATACCAAAA
TCCATGCGGATACGCAGCCCGTTACAATCGCGAAGAGGGATCAATGTTAC
AGATAAGTACCGCTTTGAACTTTTACTTAGTGCGAAAAATGATGCAAAGT
CGAAATTCTTTCAAACGTTAAAACGAATCAAAGATCTTCTGACTGAACTT
CGACCCATACTATCGGCTGAACATATGAACATTATACAGACTGTCACCGA
TAAGTCAGAGACAACATCCTTTCTCCAGTGGAAAGAACGTTTGAAAACGA
AATTCGAAAAACTGTCACCAACAAACGATCGACCAAACATCACCATCGAG
CAAAAAACGATCAAACCGGTTACGTTAAACCTCTGCAATGACCCGTTGCC
AGACCACCATCGTGAGCTACTCGACCTTGGACCAAAGTTTGTACCAACCC
AAACGCGCATCCCGTACCTCGACATCATTTCGAAGACCGAGTCAACTGCA
CTTAAAATCAAATACGCGACCAAAGAAGATACAGTACCAATGAAACTTCG
ACAAGACGTGTTGCGCGATCTTAAAATGACAAAACCACCTAAAAACAATC
TTGATTCTCGACAACGAAAAGCACTCAAAGAACTTAAATCCGATAACCAG
AATGTTATTTACCCATTTGACAAAGGTGCTGGTCTTGTTAGAATCGATAG
AGATGATGCTATCGCGAAAATCGAAGAACAACTCGGCAACACGGAAATCA
TCACACAAGATCCAACATCGACATTGGCACGAAAGTTTCAGAATACACTT
CGACCCCTTCACCAAGCTGGGAAGTTCACTGATAAAGAGTACAAAAAACT
GTATCCATCCGATCCGATACCACCTCGAATGTACGGAACCATCAAAGCTC
ATAAACCGGAAAAGAATTACCCTATGAGAGTGGTAGTTTCAACTATCGGT
ACTCCATCGTACGGAACTTCAGAATACCTTGTGAAAATTATTCAACCAAC
TCTAAACAAAAACAACACAAGGCTTAAAAACTCGTACACATTCGCTGAGC
TCACTAGATCCTGGGACGTTGACCCCGATGAAATTCAAGTGTCGTACGAC
GTAGTAAACCTCTATCCGACAGTACCTGTAGAGGAAGCTACTAACATAAT
CGTCCAGATGCTTGAAAACGATAACGACCTACCAAATAGGACAAAGCTAA
CGGTTGAAGACATCCGAACTTTGATTGAACTTTGTCTATCAAAATGTTAC
TTCCTGTGGAATGATAAACTGTACCGACTTCAGAATTCGGCACCGATCGG
TTTAGCACTAATGGTCGTAATCGCAGAAGCTTTCCTACAATATCATGAAC
AAAACGCACTTCAAGCAGCCAACGCACACGACCCTCCTGTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060443-exon-scaffold_341-1491911889:53440..54967 | TCONS_00060443-exon-scaffold_341-1491911889:53440..54967 | Clytia hemisphaerica | exon |
| TCONS_00060443-exon-scaffold_341-1510915933:53440..54967 | TCONS_00060443-exon-scaffold_341-1510915933:53440..54967 | Clytia hemisphaerica | exon |
| TCONS_00060443-exon-scaffold_341-1575043694:53440..54967 | TCONS_00060443-exon-scaffold_341-1575043694:53440..54967 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_341 | supercontig | scaffold_341:53440..54967 . |
Blast
The following BLAST results are available for this feature:
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